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Volumn 52, Issue 4, 2004, Pages 1123-1132

Analysis of the 5S rRNA gene promoter from Acanthamoeba castellanii

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME RNA; RNA POLYMERASE;

EID: 3142762621     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2004.04034.x     Document Type: Article
Times cited : (2)

References (41)
  • 1
    • 0018890841 scopus 로고
    • A control region in the center of the 5S RNA gene directs specific initiation of transcription. II. The 3′ border of the region
    • Bogenhagen, D.F., Sakonju, S., and Brown, D.D. (1980) A control region in the center of the 5S RNA gene directs specific initiation of transcription. II. The 3′ border of the region. Cell 19: 27-35.
    • (1980) Cell , vol.19 , pp. 27-35
    • Bogenhagen, D.F.1    Sakonju, S.2    Brown, D.D.3
  • 2
    • 0018624480 scopus 로고
    • Growth, reproduction and differentiation in Acanthamoeba
    • Byers, T.J. (1979) Growth, reproduction and differentiation in Acanthamoeba. Int Rev Cytol 61: 283-338.
    • (1979) Int Rev Cytol , vol.61 , pp. 283-338
    • Byers, T.J.1
  • 3
    • 0024326883 scopus 로고
    • Transcription of the 5S rRNA gene of Saccharomyces cerevisiae requires a promoter element at +1 and a 14-base pair internal control region
    • Challice, J.M., and Segall, J. (1989) Transcription of the 5S rRNA gene of Saccharomyces cerevisiae requires a promoter element at +1 and a 14-base pair internal control region. J Biol Chem 264: 20060-20067.
    • (1989) J Biol Chem , vol.264 , pp. 20060-20067
    • Challice, J.M.1    Segall, J.2
  • 4
    • 3142676707 scopus 로고
    • Relative contributions of the zinc fingers of transcription factor IIIA to the energetics of DNA binding
    • Clemens, K.R., Zhang, P., Liao, X., McBryant, S.J., Wright, P.E., and Gottesfeld, J.M. (1992) Relative contributions of the zinc fingers of transcription factor IIIA to the energetics of DNA binding. Biochemistry 31: 11600-11605.
    • (1992) Biochemistry , vol.31 , pp. 11600-11605
    • Clemens, K.R.1    Zhang, P.2    Liao, X.3    McBryant, S.J.4    Wright, P.E.5    Gottesfeld, J.M.6
  • 5
    • 0042348136 scopus 로고    scopus 로고
    • In vitro analysis of the sequences required for transcription of the Arabidopsis thaliana 55 rRNA genes
    • Cloix, C., Yukawa, Y., Tutois, S., Sugiura, M., and Tourmente, S. (2003) In vitro analysis of the sequences required for transcription of the Arabidopsis thaliana 55 rRNA genes. Plant J 35: 251-261.
    • (2003) Plant J , vol.35 , pp. 251-261
    • Cloix, C.1    Yukawa, Y.2    Tutois, S.3    Sugiura, M.4    Tourmente, S.5
  • 6
    • 0027429623 scopus 로고
    • The function of individual zinc fingers in sequence-specific DNA recognition by transcription factor IIIA
    • Del Rio, S., Menezes, S.R., and Setzer, D.R. (1993) The function of individual zinc fingers in sequence-specific DNA recognition by transcription factor IIIA. J Mol Biol 233: 567-579.
    • (1993) J Mol Biol , vol.233 , pp. 567-579
    • Del Rio, S.1    Menezes, S.R.2    Setzer, D.R.3
  • 7
    • 0024414465 scopus 로고    scopus 로고
    • Human transcription factor TFIIIC2 specifically interacts with a unique sequence in the Xenopus laevis 55 rRNA gene
    • Fradkin, L.G., Yoshinaga, S.K., Berk, A.J., and Dasgupta, A. Human transcription factor TFIIIC2 specifically interacts with a unique sequence in the Xenopus laevis 55 rRNA gene. Mol Cell Biol 9: 4941-4950.
    • Mol Cell Biol , vol.9 , pp. 4941-4950
    • Fradkin, L.G.1    Yoshinaga, S.K.2    Berk, A.J.3    Dasgupta, A.4
  • 8
    • 0035967858 scopus 로고    scopus 로고
    • The RNA polymerase III transcription apparatus
    • Geiduschek, E.P., and Kassavetis, G.A. (2001) The RNA polymerase III transcription apparatus. J Mol Biol 310: 1-26.
    • (2001) J Mol Biol , vol.310 , pp. 1-26
    • Geiduschek, E.P.1    Kassavetis, G.A.2
  • 10
    • 0035975110 scopus 로고    scopus 로고
    • Effect of mutations in the upstream promoter on the transcription of human 5S rRNA genes
    • Hallenberg, C., and Frederiksen, S. (2001) Effect of mutations in the upstream promoter on the transcription of human 5S rRNA genes. Biochim Biophys Acta 1520: 169-173.
    • (2001) Biochim Biophys Acta , vol.1520 , pp. 169-173
    • Hallenberg, C.1    Frederiksen, S.2
  • 11
    • 0034813205 scopus 로고    scopus 로고
    • Widespread use of TATA elements in the core promoters for RNA polymerases III, II, and I in fission yeast
    • Hamada, M., Huang, Y., Lowe, T.M., and Maraia, R.J. (2001) Widespread use of TATA elements in the core promoters for RNA polymerases III, II, and I in fission yeast. Mol Cell Biol 21: 6870-6881.
    • (2001) Mol Cell Biol , vol.21 , pp. 6870-6881
    • Hamada, M.1    Huang, Y.2    Lowe, T.M.3    Maraia, R.J.4
  • 12
    • 0032458244 scopus 로고    scopus 로고
    • Crossing the line between RNA polymerases: Transcription of human snRNA genes by RNA polymerases II and III
    • Henry, R.W., Ford, E., Mital, R., Mittal, V., and Hernandez, N. (1998) Crossing the line between RNA polymerases: transcription of human snRNA genes by RNA polymerases II and III. Cold Spring Harb Symp Quant Biol 63: 111-120.
    • (1998) Cold Spring Harb Symp Quant Biol , vol.63 , pp. 111-120
    • Henry, R.W.1    Ford, E.2    Mital, R.3    Mittal, V.4    Hernandez, N.5
  • 13
    • 0035394633 scopus 로고    scopus 로고
    • Comparison of the RNA polymerase III transcription machinery in Schizosaccharomyces pombe, Saccharomyces cerevisiae and human
    • Huang, Y., and Maraia, R.J. (2001) Comparison of the RNA polymerase III transcription machinery in Schizosaccharomyces pombe, Saccharomyces cerevisiae and human. Nucleic Acids Res 29: 2675-2690.
    • (2001) Nucleic Acids Res , vol.29 , pp. 2675-2690
    • Huang, Y.1    Maraia, R.J.2
  • 14
    • 0029936782 scopus 로고    scopus 로고
    • TATA elements direct bi-directional transcription by RNA polymerase II and III
    • Huang, W., Wong, J.-M., and Bateman, E. (1996) TATA elements direct bi-directional transcription by RNA polymerase II and III. Nucleic Acids Res 24: 1158-1163.
    • (1996) Nucleic Acids Res , vol.24 , pp. 1158-1163
    • Huang, W.1    Wong, J.-M.2    Bateman, E.3
  • 15
    • 0021867424 scopus 로고
    • Ribosomal RNA transcription: Proteins and DNA sequences involved in preinitiation complex formation
    • Iida, C.T., Kownin, P., and Paule, M.R. (1985) Ribosomal RNA transcription: proteins and DNA sequences involved in preinitiation complex formation. Proc Natl Acad Sci USA 82: 1668-1672.
    • (1985) Proc Natl Acad Sci USA , vol.82 , pp. 1668-1672
    • Iida, C.T.1    Kownin, P.2    Paule, M.R.3
  • 16
    • 0029912151 scopus 로고    scopus 로고
    • Alternative outcomes in assembly of promoter complexes: The roles of TBP and a flexible linker in placing TFIIIB on tRNA genes
    • Joazeiro, C.A., Kassavetis, G.A., and Geiduschek, E.P. (1996) Alternative outcomes in assembly of promoter complexes: the roles of TBP and a flexible linker in placing TFIIIB on tRNA genes. Genes Dev 10: 725-739.
    • (1996) Genes Dev , vol.10 , pp. 725-739
    • Joazeiro, C.A.1    Kassavetis, G.A.2    Geiduschek, E.P.3
  • 17
    • 0025055216 scopus 로고
    • S. cerevisiae TFIIIB is the transcription initiation factor proper of RNA polymerase III, while TFIIIA and TFIIIC are assembly factors
    • Kassavetis, G.A., Braun, B.R., Nguyen, L.H., and Geiduschek, E.P. (1990) S. cerevisiae TFIIIB is the transcription initiation factor proper of RNA polymerase III, while TFIIIA and TFIIIC are assembly factors. Cell 60: 235-245.
    • (1990) Cell , vol.60 , pp. 235-245
    • Kassavetis, G.A.1    Braun, B.R.2    Nguyen, L.H.3    Geiduschek, E.P.4
  • 18
    • 0025172881 scopus 로고
    • Additional intragenic promoter elements of the Xenopus 5S RNA genes upstream from the TFIIIA-binding site
    • Keller, H.J., You, Q.M., Romaniuk, P.J., and Gottesfeld, J.M. (1990) Additional intragenic promoter elements of the Xenopus 5S RNA genes upstream from the TFIIIA-binding site. Mol Cell Biol 10: 5166-5176.
    • (1990) Mol Cell Biol , vol.10 , pp. 5166-5176
    • Keller, H.J.1    You, Q.M.2    Romaniuk, P.J.3    Gottesfeld, J.M.4
  • 19
    • 0026699056 scopus 로고
    • Acanthamoeba castellanii RNA polymerase II transcription in vitro: Accurate initiation at the adenovirus major late promoter
    • Liu, F., and Bateman, E. (1992) Acanthamoeba castellanii RNA polymerase II transcription in vitro: accurate initiation at the adenovirus major late promoter. Gene 120: 143-149.
    • (1992) Gene , vol.120 , pp. 143-149
    • Liu, F.1    Bateman, E.2
  • 20
    • 0028999822 scopus 로고
    • Coordinate regulation of ribosomal component synthesis in Acanthamoeba castellanii: 5S RNA transcription is down regulated during encystment by alteration of TFIIIA activity
    • Matthews, J.L., Zwick, M.G., and Paule, M.R. (1995) Coordinate regulation of ribosomal component synthesis in Acanthamoeba castellanii: 5S RNA transcription is down regulated during encystment by alteration of TFIIIA activity. Mol Cell Biol 15: 3327-3335.
    • (1995) Mol Cell Biol , vol.15 , pp. 3327-3335
    • Matthews, J.L.1    Zwick, M.G.2    Paule, M.R.3
  • 21
    • 0021129712 scopus 로고
    • In vitro transcription of a silkworm 5S RNA gene requires an upstream signal
    • Morton, D.G., and Sprague, K.U. (1984) In vitro transcription of a silkworm 5S RNA gene requires an upstream signal. Proc Natl Acad Sci USA 81: 5519-5522.
    • (1984) Proc Natl Acad Sci USA , vol.81 , pp. 5519-5522
    • Morton, D.G.1    Sprague, K.U.2
  • 22
    • 0032544530 scopus 로고    scopus 로고
    • 5′-flanking sequences required for efficient transcription in vitro of 5S RNA genes, in the related nematodes Caenorhabditis elegans and Caenorhabditis briggsae
    • Nelson, D.W., Linning, R.M., Davison, P.J., and Honda, B.M. (1998) 5′-flanking sequences required for efficient transcription in vitro of 5S RNA genes, in the related nematodes Caenorhabditis elegans and Caenorhabditis briggsae. Gene 218: 9-16.
    • (1998) Gene , vol.218 , pp. 9-16
    • Nelson, D.W.1    Linning, R.M.2    Davison, P.J.3    Honda, B.M.4
  • 23
    • 0032539846 scopus 로고    scopus 로고
    • Differing roles for zinc fingers in DNA recognition: Structure of a six-finger transcription factor IIIA complex
    • Nolte, R.T., Conlin, R.M., Harrison, S.C., and Brown, R.S. (1998) Differing roles for zinc fingers in DNA recognition: structure of a six-finger transcription factor IIIA complex. Proc Natl Acad Sci USA 95: 2938-2943.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 2938-2943
    • Nolte, R.T.1    Conlin, R.M.2    Harrison, S.C.3    Brown, R.S.4
  • 24
    • 0032558958 scopus 로고    scopus 로고
    • Transcription by RNA polymerase II during Acanthamoeba differentiation
    • Orfeo, T., and Bateman, E. (1998) Transcription by RNA polymerase II during Acanthamoeba differentiation. Biochim Biophys Acta 1443: 297-304.
    • (1998) Biochim Biophys Acta , vol.1443 , pp. 297-304
    • Orfeo, T.1    Bateman, E.2
  • 25
    • 0027168221 scopus 로고
    • DNA topology and a minimal set of basal factors for transcription by RNA polymerase II
    • Parvin, J.D., and Sharp, P.A. (1993) DNA topology and a minimal set of basal factors for transcription by RNA polymerase II. Cell 73: 533-540.
    • (1993) Cell , vol.73 , pp. 533-540
    • Parvin, J.D.1    Sharp, P.A.2
  • 26
    • 0034652838 scopus 로고    scopus 로고
    • Survey and summary: Transcription by RNA polymerases I and III
    • Paule, M.R., and White, R.J. (2000) Survey and summary: transcription by RNA polymerases I and III. Nucleic Acids Res 28: 1283-1298.
    • (2000) Nucleic Acids Res , vol.28 , pp. 1283-1298
    • Paule, M.R.1    White, R.J.2
  • 27
    • 0036567072 scopus 로고    scopus 로고
    • Purification and characterization of transcription factor IIIA from Acanthamoeba castellanii
    • Polakowski, N., and Paule, M.R. (2002) Purification and characterization of transcription factor IIIA from Acanthamoeba castellanii. Nucleic Acids Res 30: 1977-1984.
    • (2002) Nucleic Acids Res , vol.30 , pp. 1977-1984
    • Polakowski, N.1    Paule, M.R.2
  • 28
    • 0028047312 scopus 로고
    • TATA-box binding protein, TBP, is a constituent of the polymerase I-specific transcription initiation factor TIP-IB (SL1) bound to the rRNA promoter and shows differential sensitivity to TBP-directed reagents in polymerase I, II and III transcription factors
    • Radebaugh, C.A., Matthews, J.L., Geiss, G.K., Liu, F., Wong, J.-M., Bateman, E., et al. (1994) TATA-box binding protein, TBP, is a constituent of the polymerase I-specific transcription initiation factor TIP-IB (SL1) bound to the rRNA promoter and shows differential sensitivity to TBP-directed reagents in polymerase I, II and III transcription factors. Mol Cell Biol 14: 597-605.
    • (1994) Mol Cell Biol , vol.14 , pp. 597-605
    • Radebaugh, C.A.1    Matthews, J.L.2    Geiss, G.K.3    Liu, F.4    Wong, J.-M.5    Bateman, E.6
  • 29
    • 0001526075 scopus 로고
    • Nuclear RNA polymerases
    • Losick, R., and Chamberlin, M., (eds). Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
    • Roeder, R.G. (1976) Nuclear RNA polymerases. In RNA Polymerase. Losick, R., and Chamberlin, M., (eds). Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, pp. 285-329.
    • (1976) RNA Polymerase , pp. 285-329
    • Roeder, R.G.1
  • 30
    • 0018841209 scopus 로고
    • A control region in the center of the 5S RNA gene directs specific initiation of transcription. I. The 5′ border of the region
    • Sakonju, S., Bogenhagen, D.F., and Brown, D.D. (1980) A control region in the center of the 5S RNA gene directs specific initiation of transcription. I. The 5′ border of the region. Cell 19: 13-25.
    • (1980) Cell , vol.19 , pp. 13-25
    • Sakonju, S.1    Bogenhagen, D.F.2    Brown, D.D.3
  • 31
    • 0037108150 scopus 로고    scopus 로고
    • Recruitment of RNA polymerase III to its target promoters
    • Schramm, L., and Hernandez, N. (2002) Recruitment of RNA polymerase III to its target promoters. Genes Dev 16: 2593-2620.
    • (2002) Genes Dev , vol.16 , pp. 2593-2620
    • Schramm, L.1    Hernandez, N.2
  • 32
    • 0023976657 scopus 로고
    • Transcription of the Drosophila melanogaster 55 RNA gene requires an upstream promoter and four intragenic sequence elements
    • Sharp, S.J., and Garcia, A.D. (1988) Transcription of the Drosophila melanogaster 55 RNA gene requires an upstream promoter and four intragenic sequence elements. Mol Cell Biol 8: 1266-1274.
    • (1988) Mol Cell Biol , vol.8 , pp. 1266-1274
    • Sharp, S.J.1    Garcia, A.D.2
  • 33
    • 0015622869 scopus 로고
    • RNA synthesis and turnover during density-inhibited growth and encystment of Acanthamoeba castellanii
    • Stevens, A.R., and Pachler, P.F. (1973) RNA synthesis and turnover during density-inhibited growth and encystment of Acanthamoeba castellanii. J Cell Biol 57: 525-537.
    • (1973) J Cell Biol , vol.57 , pp. 525-537
    • Stevens, A.R.1    Pachler, P.F.2
  • 35
    • 0023660833 scopus 로고
    • Transcription of Neurospora crassa 55 rRNA genes requires a TATA box and three internal elements
    • Tyler, B.M. (1987) Transcription of Neurospora crassa 55 rRNA genes requires a TATA box and three internal elements. J Mol Biol 196: 801-811.
    • (1987) J Mol Biol , vol.196 , pp. 801-811
    • Tyler, B.M.1
  • 36
    • 0029068497 scopus 로고
    • RNA polymerase II/III transcription specificity determined by TATA box orientation
    • Wang, W., and Stumph, W.E. (1995) RNA polymerase II/III transcription specificity determined by TATA box orientation. Proc Natl Acad Sci USA 92: 8606-8610.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 8606-8610
    • Wang, W.1    Stumph, W.E.2
  • 37
    • 0028825536 scopus 로고
    • The symmetry of the yeast U6 RNA gene's TATA box and the orientation of the TATA-binding protein in yeast TFIIIB
    • Whitehall, S.K., Kassavetis, G.A., and Geiduschek, E.P. (1995) The symmetry of the yeast U6 RNA gene's TATA box and the orientation of the TATA-binding protein in yeast TFIIIB. Genes Dev 9: 2974-2985.
    • (1995) Genes Dev , vol.9 , pp. 2974-2985
    • Whitehall, S.K.1    Kassavetis, G.A.2    Geiduschek, E.P.3
  • 38
    • 0027475474 scopus 로고
    • RNA polymerase III. Genes, factors and transcriptional specificity
    • Willis, I. (1993) RNA polymerase III. Genes, factors and transcriptional specificity. Eur J Biochem 212: 1-11.
    • (1993) Eur J Biochem , vol.212 , pp. 1-11
    • Willis, I.1
  • 39
    • 0028365899 scopus 로고
    • TBP-DNA interactions in the minor groove discriminate between A:T and T:A base pairs
    • Wong, J.-M., and Bateman, E. (1994) TBP-DNA interactions in the minor groove discriminate between A:T and T:A base pairs. Nucleic Acids Res 22: 1890-1896.
    • (1994) Nucleic Acids Res , vol.22 , pp. 1890-1896
    • Wong, J.-M.1    Bateman, E.2
  • 40
    • 0025907449 scopus 로고
    • Sequence and organization of 5S RNA genes from the eukaryotic protist Acanthamoeba castellanii
    • Zwick, M.G., Wiggs, M., and Paule, M.R. (1991a) Sequence and organization of 5S RNA genes from the eukaryotic protist Acanthamoeba castellanii. Gene 101: 153-157.
    • (1991) Gene , vol.101 , pp. 153-157
    • Zwick, M.G.1    Wiggs, M.2    Paule, M.R.3
  • 41
    • 0025753995 scopus 로고
    • Specific transcription of an Acanthamoeba castellanii 55 RNA gene in homologous nuclear extracts
    • Zwick, M.G., Imboden, M.A., and Paule, M.R. (1991b) Specific transcription of an Acanthamoeba castellanii 55 RNA gene in homologous nuclear extracts. Nucleic Acids Res 19: 1681-1686.
    • (1991) Nucleic Acids Res , vol.19 , pp. 1681-1686
    • Zwick, M.G.1    Imboden, M.A.2    Paule, M.R.3


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