메뉴 건너뛰기




Volumn 43, Issue 28, 2004, Pages 8901-8910

Interplay between site-specific mutations and cyclic nucleotides in modulating DNA recognition by Escherichia coli cyclic AMP receptor protein

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL BONDS; DNA; ESCHERICHIA COLI; PROTEINS;

EID: 3142760825     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi0499359     Document Type: Article
Times cited : (27)

References (35)
  • 1
    • 0032698634 scopus 로고    scopus 로고
    • Transcription activation by catabolite activator protein (CAP)
    • Busby, S., and Ebright, R. H. (1999) Transcription Activation by Catabolite Activator Protein (CAP), J. Mol. Biol. 293, 199-213.
    • (1999) J. Mol. Biol. , vol.293 , pp. 199-213
    • Busby, S.1    Ebright, R.H.2
  • 2
    • 0035810698 scopus 로고    scopus 로고
    • Allosteric regulation of the cAMP receptor protein
    • Harman, J. G. (2001) Allosteric regulation of the cAMP receptor protein, Biochim. Biophys. Acta 1547, 1-17.
    • (2001) Biochim. Biophys. Acta , vol.1547 , pp. 1-17
    • Harman, J.G.1
  • 3
    • 0021245317 scopus 로고
    • Cyclic AMP receptor protein: Role in transcription activation
    • de Crombrugghe, B., Busby, S., and Buc, H. (1984) Cyclic AMP Receptor Protein: Role in Transcription Activation, Science 224, 831-838.
    • (1984) Science , vol.224 , pp. 831-838
    • De Crombrugghe, B.1    Busby, S.2    Buc, H.3
  • 4
    • 0027236999 scopus 로고
    • Transcriptional regulation by cAMP and its receptor protein
    • Kolb, A., Busby, S., Buc, H., Garges, S., and Adhya, S. (1993) Transcriptional regulation by cAMP and its receptor protein, Annu. Rey Rev. Biochem. 62, 749-796.
    • (1993) Annu. Rey Rev. Biochem. , vol.62 , pp. 749-796
    • Kolb, A.1    Busby, S.2    Buc, H.3    Garges, S.4    Adhya, S.5
  • 5
    • 0020490340 scopus 로고
    • Molecular cloning and nucleotide sequencing of the gene for E. coli cAMP receptor protein
    • Aiba, H., Fujimoto, S., and Ozaki, N. (1982) Molecular cloning and nucleotide sequencing of the gene for E. coli cAMP receptor protein, Nucleic Acids Res. 10, 1345-1361.
    • (1982) Nucleic Acids Res. , vol.10 , pp. 1345-1361
    • Aiba, H.1    Fujimoto, S.2    Ozaki, N.3
  • 6
    • 0020490341 scopus 로고
    • Cloning and sequence of the crp gene of Escherichia coli K 12
    • Cossart, P., and Gicquel-Sanzey, B. (1982) Cloning and sequence of the crp gene of Escherichia coli K 12. Nucleic Acids Res. 10, 1363-1378.
    • (1982) Nucleic Acids Res. , vol.10 , pp. 1363-1378
    • Cossart, P.1    Gicquel-Sanzey, B.2
  • 7
    • 0023661228 scopus 로고
    • Structure of a complex of catabolite gene activator protein and cyclic AMP refined at 2.5 Å resolution
    • Weber, I. T., and Steitz, T. A. (1987) Structure of a Complex of Catabolite Gene Activator Protein and Cyclic AMP Refined at 2.5 Å Resolution, J. Mol. Biol. 198, 311-326.
    • (1987) J. Mol. Biol. , vol.198 , pp. 311-326
    • Weber, I.T.1    Steitz, T.A.2
  • 8
    • 0036786881 scopus 로고    scopus 로고
    • Communications between the high-affinity cyclic nucleotide binding sites in E. coli cyclic AMP receptor protein: Effect of single site mutations
    • Lin, S.-H., and Lee, J. C. (2002) Communications between the High-Affinity Cyclic Nucleotide Binding Sites in E. coli Cyclic AMP Receptor Protein: Effect of Single Site Mutations, Biochemistry 41, 11857-11867.
    • (2002) Biochemistry , vol.41 , pp. 11857-11867
    • Lin, S.-H.1    Lee, J.C.2
  • 9
    • 0019138202 scopus 로고
    • An equilibrium study of the cooperative binding of adenosine cyclic 3′,5′-monophosphate and guanosine cyclic 3′,5′- monophosphate to the adenosine cyclic 3′,5′-monophosphate receptor protein from Escherichia coli
    • Takahashi, M., Blazy, B., and Baudras, A. (1980) An Equilibrium Study of the Cooperative Binding of Adenosine Cyclic 3′,5′-Monophosphate and Guanosine Cyclic 3′,5′-Monophosphate to the Adenosine Cyclic 3′,5′-Monophosphate Receptor Protein from Escherichia coli, Biochemistry 19, 5124-5130.
    • (1980) Biochemistry , vol.19 , pp. 5124-5130
    • Takahashi, M.1    Blazy, B.2    Baudras, A.3
  • 10
    • 0024381106 scopus 로고
    • Ligand-modulated binding of a gene regulatory protein to DNA. Quantitative analysis of cyclic-AMP induced binding of CRP from Escherichia coli to non-specific and specific DNA targets
    • Takahashi, M., Blazy, B., Baudras, A., and Hillen, W. (1989) Ligand-modulated Binding of a Gene Regulatory Protein to DNA. Quantitative Analysis of Cyclic-AMP Induced Binding of CRP from Escherichia coli to Non-specific and Specific DNA Targets, J. Mol. Biol, 207, 783-796.
    • (1989) J. Mol. Biol. , vol.207 , pp. 783-796
    • Takahashi, M.1    Blazy, B.2    Baudras, A.3    Hillen, W.4
  • 11
    • 0020490955 scopus 로고
    • Structure of catabolite gene activator protein at 2.9-Å resolution. Incorporation of amino acid sequence and interactions with cyclic AMP
    • McKay, D. B., Weber, I. T., and Steitz, T. A. (1982) Structure of catabolite gene activator protein at 2.9-Å resolution. Incorporation of amino acid sequence and interactions with cyclic AMP, J. Biol. Chem. 257, 9518-9524.
    • (1982) J. Biol. Chem. , vol.257 , pp. 9518-9524
    • McKay, D.B.1    Weber, I.T.2    Steitz, T.A.3
  • 12
    • 0015612357 scopus 로고
    • A mutant transcription factor that is activated by 3′:5′- cyclic guanosine monophosphate
    • Sanders, R. and McGeoch, D. (1973) A Mutant Transcription Factor That is Activated by 3′:5′-Cyclic Guanosine Monophosphate, Proc. Natl. Acad. Sci. U.S.A. 70, 1017-1021.
    • (1973) Proc. Natl. Acad. Sci. U.S.A. , vol.70 , pp. 1017-1021
    • Sanders, R.1    McGeoch, D.2
  • 13
    • 0018103095 scopus 로고
    • Catabolite repression in Escherichia coli mutants lacking cyclic AMP*
    • Dessein, A., Schwartz, M., and Ullmann, A. (1978) Catabolite Repression in Escherichia coli Mutants Lacking Cyclic AMP*, Mol. Gen. Genet. 162, 83-87.
    • (1978) Mol. Gen. Genet. , vol.162 , pp. 83-87
    • Dessein, A.1    Schwartz, M.2    Ullmann, A.3
  • 14
    • 0021972748 scopus 로고
    • Sites of allosteric shift in the structure of the cyclic AMP receptor protein
    • Garges, S., and Adhya, S. (1985) Sites of Allosteric Shift in the Structure of the Cyclic AMP Receptor Protein, Cell 41, 745-751.
    • (1985) Cell , vol.41 , pp. 745-751
    • Garges, S.1    Adhya, S.2
  • 15
    • 0034671172 scopus 로고    scopus 로고
    • Modeling the cAMP-induced allosteric transition using the crystal structure of CAP-cAMP at 2.1 Å resolution
    • Passner, J. M., Schultz, S. C., and Steitz, T. A. (2000) Modeling the cAMP-induced Allosteric Transition Using the Crystal Structure of CAP-cAMP at 2.1 Å Resolution, J. Mol. Biol. 304, 847-859.
    • (2000) J. Mol. Biol. , vol.304 , pp. 847-859
    • Passner, J.M.1    Schultz, S.C.2    Steitz, T.A.3
  • 16
    • 0037022809 scopus 로고    scopus 로고
    • Ability of E. coli cyclic AMP receptor protein to differentiate cyclic nucleotides: Effects of single site mutations
    • Lin, S.-H., Kovac, L., Chin, A. J., Chin, C. C. Q., and Lee, J. C. (2002) Ability of E. coli Cyclic AMP Receptor Protein To Differentiate Cyclic Nucleotides: Effects of Single Site Mutations, Biochemistry 41, 2946-2955.
    • (2002) Biochemistry , vol.41 , pp. 2946-2955
    • Lin, S.-H.1    Kovac, L.2    Chin, A.J.3    Chin, C.C.Q.4    Lee, J.C.5
  • 17
    • 1842539352 scopus 로고    scopus 로고
    • A linear correlation between the energetics of allosteric communication and protein flexibility in E. coli cyclic AMP receptor protein revealed by mutation-induced changes in compressibility and amide hydrogen/deuterium exchange
    • Gekko, K., Obu, N., Li, J., and Lee. J. C. (2004) A Linear Correlation Between the Energetics of Allosteric Communication and Protein Flexibility in E. coli Cyclic AMP Receptor Protein Revealed by Mutation-Induced Changes in Compressibility and Amide Hydrogen/Deuterium Exchange, Biochemistry 43, 3844-3852.
    • (2004) Biochemistry , vol.43 , pp. 3844-3852
    • Gekko, K.1    Obu, N.2    Li, J.3    Lee, J.C.4
  • 18
    • 0030033622 scopus 로고    scopus 로고
    • Mode of selectivity in cyclic AMP receptor protein-dependent promoters in Escherichia coli
    • Pyles, E. A., and Lee, J. C. (1996) Mode of Selectivity in Cyclic AMP Receptor Protein-Dependent Promoters in Escherichia coli, Biochemistry 35, 1162-1172.
    • (1996) Biochemistry , vol.35 , pp. 1162-1172
    • Pyles, E.A.1    Lee, J.C.2
  • 19
    • 0032515937 scopus 로고    scopus 로고
    • Escherichia coli cAMP receptor protein-dna complexes: I. Energetic contributions of half sites and flanking sequences in DNA recognition
    • Pyles, E. A., Chin, A. J., and Lee, J. C. (1998) Escherichia coli cAMP Receptor Protein-DNA Complexes: I. Energetic Contributions of Half Sites and Flanking Sequences in DNA Recognition, Biochemistry 37, 5194-5200.
    • (1998) Biochemistry , vol.37 , pp. 5194-5200
    • Pyles, E.A.1    Chin, A.J.2    Lee, J.C.3
  • 20
    • 0025261344 scopus 로고
    • Application of fluorescence energy transfer and polarization to monitor Escherichia coli cAMP receptor protein and lac promoter interaction
    • Heyduk, T., and Lee, J. C. (1990) Application of fluorescence energy transfer and polarization to monitor Escherichia coli cAMP receptor protein and lac promoter interaction, Proc. Natl. Acad. Sci. U.S.A. 87, 1744-1748.
    • (1990) Proc. Natl. Acad. Sci. U.S.A. , vol.87 , pp. 1744-1748
    • Heyduk, T.1    Lee, J.C.2
  • 21
    • 0032515959 scopus 로고    scopus 로고
    • Escherichia coli cAMP receptor protein-DNA complexes: II. Structural asymmetry of DNA bending
    • Pyles, E. A., and Lee, J. C. (1998) Escherichia coli cAMP Receptor Protein-DNA Complexes: II. Structural Asymmetry of DNA Bending, Biochemistry 37, 5201-5210.
    • (1998) Biochemistry , vol.37 , pp. 5201-5210
    • Pyles, E.A.1    Lee, J.C.2
  • 22
    • 0037995648 scopus 로고    scopus 로고
    • Determinants of DNA bending in the DNA-cyclic AMP receptor complexes in E. coli
    • Lin, S.-H., and Lee, J. C. (2003) Determinants of DNA Bending in the DNA-cyclic AMP Receptor Complexes in E. coli, Biochemistry 42, 4809-4818.
    • (2003) Biochemistry , vol.42 , pp. 4809-4818
    • Lin, S.-H.1    Lee, J.C.2
  • 23
    • 0027225271 scopus 로고
    • Transcription activation at class I CAP-dependent promoters
    • Ebright, R. H. (1993) Transcription activation at Class I CAP-dependent promoters, Mol. Microbiol. 8, 797-802.
    • (1993) Mol. Microbiol. , vol.8 , pp. 797-802
    • Ebright, R.H.1
  • 24
    • 0028109558 scopus 로고
    • Characterization of the activating region of Escherichia coli catabolite gene activator protein (CAP) II. Role at class I and class II CAP-dependent promoters
    • Zhou, Y., Merkel, T. J., and Ebright, R. H. (1994) Characterization of the Activating Region of Escherichia coli Catabolite Gene Activator Protein (CAP) II. Role at Class I and Class II CAP-dependent Promoters, J. Mol. Biol. 243, 603-610.
    • (1994) J. Mol. Biol. , vol.243 , pp. 603-610
    • Zhou, Y.1    Merkel, T.J.2    Ebright, R.H.3
  • 25
    • 0029143924 scopus 로고
    • Thermodynamics of cyclic nucleotide binding to the cAMP receptor protein and Its T127L mutant
    • Gorshkova, I. I., Moore, J. L., McKenney, K. H., and Schwarz, F. P. (1995) Thermodynamics of Cyclic Nucleotide Binding to the cAMP Receptor Protein and Its T127L Mutant, J. Biol. Chem. 270, 21679-21683.
    • (1995) J. Biol. Chem. , vol.270 , pp. 21679-21683
    • Gorshkova, I.I.1    Moore, J.L.2    McKenney, K.H.3    Schwarz, F.P.4
  • 27
    • 0026317589 scopus 로고
    • The role of two surface exposed loops in transcription activation by the Escherichia coli CRP and FNR proteins
    • Williams, R., Bell, A., Sims, G., and Busby, S. (1991) The Role of Two Surface Exposed Loops in Transcription Activation by the Escherichia coli CRP and FNR Proteins. Nucleic Acids Res. 24, 6705-6712.
    • (1991) Nucleic Acids Res. , vol.24 , pp. 6705-6712
    • Williams, R.1    Bell, A.2    Sims, G.3    Busby, S.4
  • 28
    • 0022902508 scopus 로고
    • Structure-function analysis of three cAMP-independent forms of the cAMP receptor protein
    • Harman, J. G., McKenney, K. H., and Peterkofsky, A. (1986) Structure-Function Analysis of Three cAMP-independent Forms of the cAMP Receptor Protein, J. Biol. Chem. 261, 16332-16339.
    • (1986) J. Biol. Chem. , vol.261 , pp. 16332-16339
    • Harman, J.G.1    McKenney, K.H.2    Peterkofsky, A.3
  • 29
    • 0038645831 scopus 로고    scopus 로고
    • Functional roles of loops 3 and 4 in the cyclic nucleotide binding domain of cyclic AMP receptor protein from Escherichia coli
    • Chen, R., and Lee, J. C. (2003) Functional Roles of Loops 3 and 4 in the Cyclic Nucleotide Binding Domain of Cyclic AMP Receptor Protein from Escherichia coli, J. Biol. Chem. 278, 13235-1324328.
    • (2003) J. Biol. Chem. , vol.278 , pp. 13235-1324328
    • Chen, R.1    Lee, J.C.2
  • 30
    • 2642612817 scopus 로고    scopus 로고
    • Interactive and dominant effects of residues 128 and 141 on cyclic nucleotide and DNA bindings in E. coli cAMP receptor protein
    • Cheng, X. D., and Lee, J. C. (1998) Interactive and Dominant Effects of Residues 128 and 141 on Cyclic Nucleotide and DNA Bindings in E. coli cAMP Receptor Protein, J. Biol. Chem. 273, 705-712.
    • (1998) J. Biol. Chem. , vol.273 , pp. 705-712
    • Cheng, X.D.1    Lee, J.C.2
  • 31
    • 0029118463 scopus 로고
    • Probing the mechanism of CRP activation by site-directed mutagenesis: The role of serine 128 in the allosteric pathway of cAMP receptor protein activation
    • Cheng, X. D., Kovac, L., and Lee, J. C. (1995) Probing the Mechanism of CRP Activation by Site-Directed Mutagenesis: The Role of Serine 128 in the Allosteric Pathway of cAMP Receptor Protein Activation, Biochemistry 34, 10816-10826.
    • (1995) Biochemistry , vol.34 , pp. 10816-10826
    • Cheng, X.D.1    Kovac, L.2    Lee, J.C.3
  • 32
    • 0032488626 scopus 로고    scopus 로고
    • Differential perturbation of intersubunit and Interdomain communications by glycine 141 mutation in E. coli CRP
    • Cheng, X. D., and Lee, J. C. (1998) Differential Perturbation of Intersubunit and Interdomain Communications by Glycine 141 Mutation in E. coli CRP, Biochemistry 37, 51-60.
    • (1998) Biochemistry , vol.37 , pp. 51-60
    • Cheng, X.D.1    Lee, J.C.2
  • 33
    • 0033548428 scopus 로고    scopus 로고
    • Effect of mutations at the monomer-monomer interface of cAMP receptor protein on specific DNA binding
    • Shi, Y., Wang, S., Krueger, S., and Schwarz, F. P. (1999) Effect of mutations at the monomer-monomer interface of cAMP receptor protein on specific DNA binding, J. Biol. Chem. 274, 6946-6956.
    • (1999) J. Biol. Chem. , vol.274 , pp. 6946-6956
    • Shi, Y.1    Wang, S.2    Krueger, S.3    Schwarz, F.P.4
  • 34
    • 0037188392 scopus 로고    scopus 로고
    • Ligand-induced conformational and structural dynamics changes in Escherichia coli cyclic AMP receptor protein
    • Dong, A., Malecki, J., Lee, L., Carpenter, J. F., and Lee, J. C. (2002) Ligand-Induced Conformational and Structural Dynamics Changes in Escherichia coli Cyclic AMP Receptor Protein, Biochemistry 41, 6660-6667.
    • (2002) Biochemistry , vol.41 , pp. 6660-6667
    • Dong, A.1    Malecki, J.2    Lee, L.3    Carpenter, J.F.4    Lee, J.C.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.