A lineage-specific centromeric satellite sequence in the genus Trifolium

Chromosome Research

Volumn 12, Issue 4, 2004, Pages 357-367

  Ansari, Helal A ^a   Ellison, Nick W ^a   Griffiths, Andrew G ^a   Williams, Warren M ^a  

^a AGRESEARCH GRASSLANDS   (New Zealand)

Author keywords

centromere; fluorescence in situ hybridization; forage legume; satellite DNA; tandem repeat; Trifolium repens; white clover

Indexed keywords

REPETITIVE DNA; SATELLITE DNA;

ARTICLE; CELL LINEAGE; CENTROMERE; CHEMICAL STRUCTURE; CHROMOSOME; CLOVER; CONTROLLED STUDY; DNA FLANKING REGION; DNA MICROARRAY; FLUORESCENCE IN SITU HYBRIDIZATION; GENE SEQUENCE; GENOME; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; SOUTHERN BLOTTING; SOUTHERN EUROPE;

CENTROMERE; DNA, PLANT; DNA, SATELLITE; EVOLUTION, MOLECULAR; IN SITU HYBRIDIZATION, FLUORESCENCE; MINISATELLITE REPEATS; SPECIES SPECIFICITY; TRIFOLIUM;

EMBRYOPHYTA; TRIFOLIUM; TRIFOLIUM REPENS;

EID: 3142746644     PISSN: 09673849     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:CHRO.0000034099.19570.b7     Document Type: Article

References (36)

1. Alexandrov I, Kazakov A, Tumeneva I, Shepelev V, Yurov Y (2001) Alpha-satellite DNA of primates: old and new families. Chromosoma 110: 253-266.
2. Ansari HA, Ellison NW, Reader SM et al. (1999) Molecular cytogenetic organization of 5S and 18S-26S rDNA loci in white clover (Trifolium repens L.) and related species. Ann Bot 83: 199-206.
3. Appels R, Moran LB, Gustafson JP (1986) Rye heterochromatin. I. Studies on clusters of the major repeating sequence and the identification of a new dispersed repetitive sequence element. Can J Genet Cytol 28: 645-657.
4. Aragón-Alcaide L, Miller T, Schwarzacher T, Reader S, Moore G (1996) A cereal centromeric sequence. Chromosoma 105: 261-268.
5. Bennett MD, Leitch IJ (1995) Nuclear DNA amounts in Angiosperms. Ann Bot 76: 113-176.
6. Chen C, Gibson PB (1971) Karyotypes of fifteen Trifolium species in Section Amoria. Crop Sci 11: 441-445.
7. Chen C, Gibson PB (1972) Chromosome relationships of Trifolium uniflorum to T. repens and T. occidentale. Can J Genet Cytol 14: 591-595.
8. Chomcszynski P (1992) One-hour downward alkaline capillary transfer for blotting of DNA and RNA. Ann Biochem 201: 134-139.
9. Church GM, Gilbert W (1984) Genomic sequencing. Proc Natl Acad Sci USA 81: 1991-1995.
10. Fry K, Salser W (1977) Nucleotide sequence of HS - a satellite DNA from kangaroo rat Dipodomys ordii and characterization of similar sequences in other rodents. Cell 12: 1069-1084.
11. Galasso I, Schmidt T, Pignone D, Heslop-Harrison JS (1995) The molecular cytogenetics of Vigna unguiculata (L.) Walp: the physical organization and characterization of 18s-5.8s-25s rRNA genes, 5s rRNA genes, telomere-like sequences, and a family of centromeric repetitive DNA sequences. Theor Appl Genet 91: 928-935.
12. Heslop-Harrison JS, Brandes A, Schwarzacher T (2003) Tandemly repeated DNA sequences and centromeric chromosomal regions of Arabidopsis species. Chromosome Res 11: 241-253.
13. Hossain M (1961) A revision of Trifolium in the Nearer East. Notes Royal Botanic Garden, Edinburgh 23: 387-481.
14. Hussain SW, Williams WM (1997) Development of a fertile genetic bridge between Trifolium ambiguum M. Bieb and T. repens L. Theor Appl Genet 95: 678-690.
15. 1 hybrid. Theor Appl Genet 94: 821-831.
16. Jiang J, Nasuda S, Dong F et al. (1996) A conserved repetitive DNA element located in the centromeres of cereal chromosomes. Proc Natl Acad Sci USA 93: 14210-14213.
17. Kamm A, Galasso I, Schmidt T, Heslop-Harrison JS (1995) Analysis of a repetitive DNA family from Arabidopsis arenosa and relationships between Arabidopsis species. Plant Mol Biol 27: 853-862.
18. Kato M (1999) Structural bistability of repetitive DNA elements featuring CA/TG dinucleotide steps and mode of evolution of satellite DNA. Eur J Biochem 265: 204-209.
19. Katsiotis A, Hagidimitriou M, Douka A, Hatzopoulos P (1998) Genomic organization, sequence interrelationship, and physical localization of two tandemly repeated DNA sequences in the genus Olea. Genome 41: 527-534.
20. Macas J, Mészáros T, Nouzová M (2002) PlantSat: a specialized database for plant satellite repeats. Bioinformatics 18: 28-35.
21. Macas J, Požárková, D, Navrátilová A, Nouzová M, Neumann P (2000) Two new families of tandem repeats isolated from genus Vicia using genomic self-priming PCR. Mol Gen Genet 263: 741-751.
22. Miller JT, Jackson SA, Nasuda S, Gill BS, Wing RA, Jiang J (1998) Cloning and characterization of a centromere-specific repetitive DNA element from Sorghum bicolor. Theor Appl Genet 96: 832-839.
23. Modi WS (1993) Heterogeneity in the concerted evolution process of a tandem satellite array in meadow mice (Microtus). J Mol Evol 37: 48-56.
24. Morgante M, Jurman I, Shi L, Zhu T, Keim P, Rafalski JA (1997) The STR120 satellite DNA of soybean: organization, evolution and chromosome specificity. Chromosome Res 5: 363-373.
25. Mukai Y, Friebe B, Gill BS (1992) Comparison of C-banding patterns and in situ hybridization sites using highly repetitive and total genomic rye DNA probes of 'Imperial' rye chromosomes added to 'Chinese Spring' wheat. Jpn J Genet 67: 71-84.
26. Nonomura K-I, Kurata N (1999) Organization of the 1.9-kb repeat unit RCE1 in the centromeric region of rice chromosomes. Mol Gen Genet 261: 1-10.
27. Pich U, Fritsch R, Schubert I (1996) Closely related Allium species (Alliaceae) share a very similar satellite sequence. Plant Syst Evol 202: 255-264.
28. Pons J, Juan C, Petitpierre E (2002) Higher-order organization and compartmentalization of satellite DNA PIM357 in species of the coleopteran genus Pimelia. Chromosome Res 10: 597-606.
29. Schmidt T, Kubis S, Katsiotis A, Jung C, Heslop-Harrison JS (1998) Molecular and chromosomal organization of two repetitive DNA sequences with intercalary locations in sugar beet and other Beta species. Theor Appl Genet 97: 696-704.
30. Shmookler Reuse RJ, Srivastave A, Beranek DT, Goldstein S (1985) Human alphoid family of tandemly repeated DNA: sequence of cloned tetrameric fragments and analysis of familial divergence. J Mol Biol 186: 31-41.
31. Ugarković D, Plohl M (2002) Variation in satellite DNA profile - causes and effects. EMBO J 21: 5955-5959.
32. Vershinin AV, Schwarzacher T, Heslop-Harrison JS (1995) The large scale genomic organization of repetitive DNA families at the telomeres of rye chromosomes. Plant Cell 7: 1823-1833.
33. Williams WM (1987) White clover taxonomy and biosystematics. In: Baker MJ, Williams WM, eds. White Clover. CAB International, Oxon, pp 323-342.
34. Williams WM, Ansari HA, Ellison NW, Husain SW (2001) Evidence of three subspecies in Trifolium nigrescens Viv. Ann Bot 87: 683-691.
35. Zhu JM, Ellison NW, Rowland RE (1996) Chromosomal localization of a tandemly repeated DNA sequence in Trifolium repens L. Cell Res 6: 39-46.
36. Zohary M, Heller D (1984) The Genus Trifolium. The Israel Academy of Sciences and Humanities, Jerusalem.