메뉴 건너뛰기




Volumn 236, Issue 2, 2004, Pages 349-357

Fluorescence Resonance Energy Transfer (FRET) based molecular detection of a genetically modified PCB degrader in soil

Author keywords

Bioremediation; bphLB400 operon; FRET detection; Polychlorinated biphenyl; Pseudomonas fluorescens F113rifPCB

Indexed keywords

POLYCHLORINATED BIPHENYL;

EID: 3142612993     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.femsle.2004.06.014     Document Type: Article
Times cited : (13)

References (30)
  • 2
    • 84907112796 scopus 로고
    • Aerobic and anaerobic biodegradation of PCBs: A review
    • Abramowicz D.A. Aerobic and anaerobic biodegradation of PCBs: a review. Crit. Rev. Biotech. 10(3):1990;241-251
    • (1990) Crit. Rev. Biotech. , vol.10 , Issue.3 , pp. 241-251
    • Abramowicz, D.A.1
  • 3
    • 0001784825 scopus 로고
    • Environmental toxicology of polychlorinated biphenyls
    • Hansen L.G. Environmental toxicology of polychlorinated biphenyls. Environ. Toxin Series. 1:1987;15-48
    • (1987) Environ. Toxin Series , vol.1 , pp. 15-48
    • Hansen, L.G.1
  • 4
    • 0025306810 scopus 로고
    • Ecological fate, effects and prospects for the elimination of environmental polychlorinated biphenyls (PCBs)
    • Hooper S.W., Pettigrew C.A., Sayler G.S. Ecological fate, effects and prospects for the elimination of environmental polychlorinated biphenyls (PCBs). Environ. Toxicol. Chem. 9:1990;655-667
    • (1990) Environ. Toxicol. Chem. , vol.9 , pp. 655-667
    • Hooper, S.W.1    Pettigrew, C.A.2    Sayler, G.S.3
  • 5
    • 0031741781 scopus 로고    scopus 로고
    • Sexual difference in polychlorinated biphenyl accumulation rates of walleye (Stizostedion vitreum)
    • Madenjian C.P., Noguchi G.E., Haas R.C., Schrouder K.S. Sexual difference in polychlorinated biphenyl accumulation rates of walleye (Stizostedion vitreum). Can. J. Fish. Aquat. Sci. 55:1998;1085-1092
    • (1998) Can. J. Fish. Aquat. Sci. , vol.55 , pp. 1085-1092
    • Madenjian, C.P.1    Noguchi, G.E.2    Haas, R.C.3    Schrouder, K.S.4
  • 7
    • 0031985850 scopus 로고    scopus 로고
    • Rhizoremediation of trichloroethylene by a recombinant root colonizing Pseudomonas fluorescens strain expressing toluene ortho-monoxygenase constitutively
    • Yee D., Maynard J.A., Wood T.K. Rhizoremediation of trichloroethylene by a recombinant root colonizing Pseudomonas fluorescens strain expressing toluene ortho-monoxygenase constitutively. Appl. Environ. Microbiol. 64:1998;112-118
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 112-118
    • Yee, D.1    Maynard, J.A.2    Wood, T.K.3
  • 8
    • 0029074980 scopus 로고
    • Construction of a rhizosphere Pseudomonad with potential to degrade polychlorinated biphenyls and detection of bph gene expression in the rhizosphere
    • Brazil G.M., Kenefick L., Callanan M., Haro A., de Lorenzo V., Dowling D.N., O'Gara F. Construction of a rhizosphere Pseudomonad with potential to degrade polychlorinated biphenyls and detection of bph gene expression in the rhizosphere. Appl. Environ. Microbiol. 61:1995;1946-1952
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1946-1952
    • Brazil, G.M.1    Kenefick, L.2    Callanan, M.3    Haro, A.4    De Lorenzo, V.5    Dowling, D.N.6    O'Gara, F.7
  • 9
    • 2142643643 scopus 로고    scopus 로고
    • Combined use of different Gfp reporters for monitoring single-cell activity of a genetically modified PCB degrader in the rhizosphere of Alfalfa
    • Boldt T.S., Soerensen J., Karlson U., Molin S., Ramos C. Combined use of different Gfp reporters for monitoring single-cell activity of a genetically modified PCB degrader in the rhizosphere of Alfalfa. FEMS Microbiol. Ecol. 48(2):2004;139-148
    • (2004) FEMS Microbiol. Ecol. , vol.48 , Issue.2 , pp. 139-148
    • Boldt, T.S.1    Soerensen, J.2    Karlson, U.3    Molin, S.4    Ramos, C.5
  • 10
    • 8744268054 scopus 로고    scopus 로고
    • European Commision, Joint Research Centre, Institute of Health and Consumer Protection, Food Products and Consumer Goods Unit, I-21020 Ispra, Italy
    • Bonfini, L., Heinze, P., Kay, S. and Van den Eede, G. (2001) Review of GMO detection and Quantification Techniques. European Commision, Joint Research Centre, Institute of Health and Consumer Protection, Food Products and Consumer Goods Unit, I-21020 Ispra, Italy
    • (2001) Review of GMO Detection and Quantification Techniques
    • Bonfini, L.1    Heinze, P.2    Kay, S.3    Van Den Eede, G.4
  • 13
    • 0027367616 scopus 로고
    • A DNA module encoding bph genes for the degradation of polychlorinated biphenyls (PCBs)
    • Dowling D.N., Pipke R., Dwyer D.F. A DNA module encoding bph genes for the degradation of polychlorinated biphenyls (PCBs). FEMS Microbiol. Lett. 113:1993;149-154
    • (1993) FEMS Microbiol. Lett. , vol.113 , pp. 149-154
    • Dowling, D.N.1    Pipke, R.2    Dwyer, D.F.3
  • 14
    • 0037641131 scopus 로고    scopus 로고
    • Detection and enumeration of aromatic oxygenase genes by multiplex and real-time PCR
    • Baldwin B.R., Nakatsu C.H., Nies L. Detection and enumeration of aromatic oxygenase genes by multiplex and real-time PCR. Appl. Environ. Microbiol. 69:2003;3350-3358
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 3350-3358
    • Baldwin, B.R.1    Nakatsu, C.H.2    Nies, L.3
  • 16
    • 0027968068 scopus 로고
    • Improving the sensitivity of progressive multiple alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. Improving the sensitivity of progressive multiple alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acids Res. 22:1994;4673-4680
    • (1994) Nucl. Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 17
    • 0002554607 scopus 로고
    • The design and optimisation of PCR technology
    • H.A. Erlich. Stockton Press, UK: MacMillan Publishers
    • Saiki R.K. The design and optimisation of PCR technology. Erlich H.A. Principles and Applications for DNA amplification. 1989;7-16 MacMillan Publishers, Stockton Press, UK
    • (1989) Principles and Applications for DNA Amplification , pp. 7-16
    • Saiki, R.K.1
  • 18
    • 0004222748 scopus 로고    scopus 로고
    • Rozen, S., Skaletsky, H.J. (1998) Primer3. Code available at http://www-genome.wi.mit.edu/genome_software/other/primer3.html
    • (1998) Primer3
    • Rozen, S.1    Skaletsky, H.J.2
  • 19
    • 0016700864 scopus 로고
    • Detection of specific sequences among DNA fragments separated by gel electrophoresis
    • Southern E.M. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J. Mol. Biol. 98:1975;503
    • (1975) J. Mol. Biol. , vol.98 , pp. 503
    • Southern, E.M.1
  • 20
    • 0027198281 scopus 로고
    • Genetic analysis of a gene cluster composing a pathway for biphenyl/polychlorinated biphenyl degradation
    • Hofer B., Eltis L., Dowling D.N., Timmis K.N. Genetic analysis of a gene cluster composing a pathway for biphenyl/polychlorinated biphenyl degradation. Gene. 130:1993;47-55
    • (1993) Gene , vol.130 , pp. 47-55
    • Hofer, B.1    Eltis, L.2    Dowling, D.N.3    Timmis, K.N.4
  • 21
    • 0025195680 scopus 로고
    • Mini-Tn5 transposon derivatives for insertion mutagenesis, promoter probing, and chromosomal insertion of cloned DNA in gram-negative eubacteria
    • De Lorenzo V., Herrero M., Jakubzik U., Timmis K.N. Mini-Tn5 transposon derivatives for insertion mutagenesis, promoter probing, and chromosomal insertion of cloned DNA in gram-negative eubacteria. J. Bacteriol. 172:1990;6568-6572
    • (1990) J. Bacteriol. , vol.172 , pp. 6568-6572
    • De Lorenzo, V.1    Herrero, M.2    Jakubzik, U.3    Timmis, K.N.4
  • 23
    • 0038201614 scopus 로고    scopus 로고
    • Identification and quantification of Chlamydia pneumoniae in human atherosclerotic plaques by lightcycler real-time PCR
    • Ciervo A., Petrucca A., Cassone A. Identification and quantification of Chlamydia pneumoniae in human atherosclerotic plaques by lightcycler real-time PCR. Mol. Cell. Probes. 17:2003;107-111
    • (2003) Mol. Cell. Probes , vol.17 , pp. 107-111
    • Ciervo, A.1    Petrucca, A.2    Cassone, A.3
  • 24
    • 0027386075 scopus 로고
    • Metabolism of dibenzothiophene and naphthalene in Pseudomonas strains: Complete DNA sequence of an upper naphthalene catabolic pathway
    • Denome S.A., Stanley D.C., Olsen E.S., Young K.D. Metabolism of dibenzothiophene and naphthalene in Pseudomonas strains: complete DNA sequence of an upper naphthalene catabolic pathway. J. Bacteriol. 175(21):1993;6890-6901
    • (1993) J. Bacteriol. , vol.175 , Issue.21 , pp. 6890-6901
    • Denome, S.A.1    Stanley, D.C.2    Olsen, E.S.3    Young, K.D.4
  • 25
    • 0027937786 scopus 로고
    • Organisation and evolution of naphthalene catabolic pathways: Sequence of the DNA encoding 2- Hydroxychromene - Carboxylate isomerase and trans-o-Hydroxybenzylidenepyruvate hydratase - Aldolase from the Nah7 Plasmid
    • Eaton R.W. Organisation and evolution of naphthalene catabolic pathways: Sequence of the DNA encoding 2- Hydroxychromene - carboxylate isomerase and trans-o-Hydroxybenzylidenepyruvate hydratase - aldolase from the Nah7 Plasmid. J. Bacteriol. 176:1994;7757-7762
    • (1994) J. Bacteriol. , vol.176 , pp. 7757-7762
    • Eaton, R.W.1
  • 26
    • 1842582678 scopus 로고    scopus 로고
    • Real-time PCR quantification of a green fluorescent protein-labelled, genetically engineered Pseudomonas putida strain during 2-chlorobenzoate degradation in soil
    • Wang G., Gentry T.J., Grass G., Josephson K., Rensing C., Pepper I.L. Real-time PCR quantification of a green fluorescent protein-labelled, genetically engineered Pseudomonas putida strain during 2-chlorobenzoate degradation in soil. FEMS Microbiol. Lett. 233:2004;307-314
    • (2004) FEMS Microbiol. Lett. , vol.233 , pp. 307-314
    • Wang, G.1    Gentry, T.J.2    Grass, G.3    Josephson, K.4    Rensing, C.5    Pepper, I.L.6
  • 28
    • 0036067454 scopus 로고    scopus 로고
    • Use of both 16S rRNA and engineered functional genes with real-time PCR to quantify an engineered, PCB-degrading Rhodococcus in soil
    • Rodrigues J.L.M., Aiello M.R., Urbance J.W., Tsoi T.V., Tieje J.M. Use of both 16S rRNA and engineered functional genes with real-time PCR to quantify an engineered, PCB-degrading Rhodococcus in soil. J. Microbiol. Meth. 51:2002;181-189
    • (2002) J. Microbiol. Meth. , vol.51 , pp. 181-189
    • Rodrigues, J.L.M.1    Aiello, M.R.2    Urbance, J.W.3    Tsoi, T.V.4    Tieje, J.M.5
  • 29
    • 0026527458 scopus 로고
    • Isolation of 2,4-diacetylphloroglucinol from a fluorescent Pseudomonad and investigation of physiological parameters influencing its production
    • Shanahan P., O'Sullivan D.J., Simpson P., Glennon J., O'Gara F. Isolation of 2, 4-diacetylphloroglucinol from a fluorescent Pseudomonad and investigation of physiological parameters influencing its production. Appl. Environ. Microbiol. 58:1992;353-358
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 353-358
    • Shanahan, P.1    O'Sullivan, D.J.2    Simpson, P.3    Glennon, J.4    O'Gara, F.5
  • 30
    • 0030047589 scopus 로고    scopus 로고
    • Construction of a modified mini-Tn5 lacZY non-antibiotic marker cassette: Ecological evaluation of a lacZY marked Pseudomonas strain in the sugarbeet rhizosphere
    • Fedi S., Brazil D., Dowling D.N., O'Gara F. Construction of a modified mini-Tn5 lacZY non-antibiotic marker cassette: ecological evaluation of a lacZY marked Pseudomonas strain in the sugarbeet rhizosphere. FEMS Microbiol. Lett. 135:1996;251-257
    • (1996) FEMS Microbiol. Lett. , vol.135 , pp. 251-257
    • Fedi, S.1    Brazil, D.2    Dowling, D.N.3    O'Gara, F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.