Tandem repeat of a seven-bladed β-propeller domain in oligoxyloglucan reducing-end-specific cellobiohydrolase

Structure

Volumn 12, Issue 7, 2004, Pages 1209-1217

  Yaoi, Katsuro ^a   Kondo, Hidemasa ^b   Noro, Natsuko ^b   Suzuki, Mamoru ^c   Tsuda, Sakae ^b,d   Mitsuishi, Yasushi ^a  

^a NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

^b NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

^c OSAKA UNIVERSITY   (Japan)

^d HOKKAIDO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CELLULOSE 1,4 BETA CELLOBIOSIDASE; OLIGOSACCHARIDE; OLIGOXYLOGLUCAN REDUCING END SPECIFIC CELLOBIOHYDROLASE; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; CATALYSIS; CRYSTAL STRUCTURE; ENZYME ANALYSIS; ENZYME STRUCTURE; MUTATION; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FOLDING; SEQUENCE ALIGNMENT; TANDEM REPEAT; X RAY CRYSTALLOGRAPHY;

AMINO ACID SEQUENCE; CELLULOSE 1,4-BETA-CELLOBIOSIDASE; CRYSTALLOGRAPHY, X-RAY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; TANDEM REPEAT SEQUENCES;

EID: 3142572747     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.str.2004.04.020     Document Type: Article

References (41)

1. Alberto F., Bignon C., Sulzenbacher G., Henrissat B., Czjzek M. The three-dimensional structure of invertase (β-fructosidase) from Thermotoga maritima reveals a bimodular arrangement and an evolutionary relationship between retaining and inverting glycosidases. J. Biol. Chem. 279:2004;18903-18910
2. Augur C., Yu L., Sakai K., Ogawa T., Sinay P., Darvill A.G., Albersheim P. Further-studies of the ability of xyloglucan oligosaccharides to inhibit auxin-stimulated growth. Plant Physiol. 99:1992;180-185
3. Brünger A.T. Free R value. a novel statistical quantity for assessing the accuracy of crystal-structures Nature. 355:1992;472-475
4. Brünger A.T., Adams P.D., Clore G.M., DeLano W.L., Gros P., Grosse-Kunstleve R.W., Jiang J.S., Kuszewski J., Nilges M., Pannu N.S., et al. Crystallography & NMR system. A new software suite for macromolecular structure determination Acta Crystallogr. D Biol Crystallogr. 54:1998;905-921
5. Chhabra S.R., Kelly R.M. Biochemical characterization of Thermotoga maritima endoglucanase Ce174 with and without a carbohydrate binding module (CBM). FEBS Lett. 531:2002;375-380
6. CCP4 The CCP4 (Collaborative Computational Project 4) suite. programs for protein crystallography Acta Crystallogr. D Biol Crystallogr. 50:1994;760-763
7. Divne C., Stahlberg J., Reinikainen T., Ruohonen L., Pettersson G., Knowles J.K.C., Teeri T.T., Jones T.A. The 3-Dimensional crystal-structure of the catalytic core of cellobiohydrolase I from Trichoderma reesei. Science. 265:1994;524-528
8. Engh R.A., Huber R. Accurate bond and angle parameters for X-ray protein-structure refinement. Acta Crystallogr. A. 47:1991;392-400
9. Esnouf R.M. An extensively modified version of MolScript that includes greatly enhanced coloring capabilities. J. Mol. Graph. Model. 15:1997;132-134
10. Fry S.C. The structure and functions of xyloglucan. J. Exp. Bot. 40:1989;1-11
11. Hasper A.A., Dekkers E., van Mil M., van de Vondervoort P.J.I., de Graaff L.H. EglC, a new endoglucanase from Aspergillus niger with major activity towards xyloglucan. Appl. Environ. Microbiol. 68:2002;1556-1560
12. Hayashi T. Xyloglucans in the primary-cell wall. Annu. Rev. Plant Physiol. Plant Mol. Biol. 40:1989;139-168
13. Hayashi T., Ogawa K., Mitsuishi Y. Characterization of the adsorption of xyloglucan to cellulose. Plant Cell Physiol. 35:1994;1199-1205. a
14. Hayashi T., Takeda T., Ogawa K., Mitsuishi Y. Effects of the degree of polymerization on the binding of xyloglucans to cellulose. Plant Cell Physiol. 35:1994;893-899. b
15. Hendrickson W.A. Determination of macromolecular structures from anomalous diffraction of synchrotron radiation. Science. 254:1991;51-58
16. Irwin D.C., Cheng M., Xiang B.S., Rose J.K.C., Wilson D.B. Cloning, expression and characterization of a family-74 xyloglucanase from Thermobifida fusca. Eur. J. Biochem. 270:2003;3083-3091
17. Jawad Z., Paoli M. Novel sequences propel familiar folds. Structure. 10:2002;447-454
18. Kabsch W., Sander C. Dictionary of protein secondary structure. pattern-recognition of hydrogen-bonded and geometrical features Biopolymers. 22:1983;2577-2637
19. Konishi T., Mitsuishi Y., Kato Y. Analysis of the oligosaccharide units of xyloglucans by digestion with isoprimeverose-producing oligoxyloglucan hydrolase followed by anion-exchange chromatography. Biosci. Biotechnol. Biochem. 62:1998;2421-2424
20. Kraulis P.J. Molscript. a program to produce both detailed and schematic plots of protein structures J. Appl. Crystallogr. 24:1991;946-950
21. Lamzin V.S., Wilson K.S. Automated refinement of protein models. Acta Crystallogr. D Biol Crystallogr. 49:1993;129-147
22. Laskowski R.A., Macarthur M.W., Moss D.S., Thornton J.M. Procheck. a program to check the stereochemical quality of protein structures J. Appl. Crystallogr. 26:1993;283-291
23. McDougall G.J., Fry S.C. Inhibition of auxin-stimulated growth of pea stem segments by a specific nonasaccharide of xyloglucan. Planta. 175:1988;412-416
24. McDougall G.J., Fry S.C. Xyloglucan oligosaccharides promote growth and activate cellulase. evidence for a role of cellulase in cell expansion Plant Physiol. 93:1990;1042-1048
25. McRee D.E. XtalView Xfit - A versatile program for manipulating atomic coordinates and electron density. J. Struct. Biol. 125:1999;156-165
26. Merritt E.A., Bacon D.J. Raster3D. Photorealistic molecular graphics Methods Enzymol. 277:1997;505-524
27. Murshudov G.N., Vagin A.A., Dodson E.J. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D Biol. Crystallogr. 53:1997;240-255
28. Nicholls A., Sharp K.A., Honig B. Protein folding and association. insights from the interfacial and thermodynamic properties of hydrocarbons Proteins. 11:1991;281-296
29. Paoli M., Anderson B.F., Baker H.M., Morgan W.T., Smith A., Baker E.N. Crystal structure of hemopexin reveals a novel high-affinity heme site formed between two β-propeller domains. Nat. Struct. Biol. 6:1999;926-931
30. Perrakis A., Sixma T.K., Wilson K.S., Lamzin V.S. wARP. Improvement and extension of crystallographic phases by weighted averaging of multiple-refined dummy atomic models Acta Crystallogr. D Biol. Crystallogr. 53:1997;448-455
31. Powell H.R. The Rossmann Fourier autoindexing algorithm in MOSFLM. Acta Crystallogr. D Biol. Crystallogr. 55:1999;1690-1695
32. Rossmann M.G., van Beek C.G. Data processing. Acta Crystallogr. D Biol. Crystallogr. 55:1999;1631-1640
33. Rouvinen J., Bergfors T., Teeri T., Knowles J.K.C., Jones T.A. Three-dimensional structure of cellobiohydrolase II from Trichoderma reesei. Science. 249:1990;380-386
34. Takeda T., Furuta Y., Awano T., Mizuno K., Mitsuishi Y., Hayashi T. Suppression and acceleration of cell elongation by integration of xyloglucans in pea stem segments. Proc. Natl. Acad. Sci. USA. 99:2002;9055-9060
35. Terwilliger T.C. Maximum-likelihood density modification. Acta Crystallogr. D Biol. Crystallogr. 56:2000;965-972
36. Terwilliger T.C., Berendzen J. Automated MAD and MIR structure solution. Acta Crystallogr. D Biol. Crystallogr. 55:1999;849-861
37. Yaoi K., Mitsuishi Y. Purification, characterization, cloning, and expression of a novel xyloglucan-specific glycosidase, oligoxyloglucan reducing end-specific cellobiohydrolase. J. Biol. Chem. 277:2002;48276-48281
38. Yaoi K., Mitsuishi Y. Purification, characterization, cDNA cloning, and expression of a xyloglucan endoglucanase from Geotrichum sp. M128. FEBS Lett. 560:2004;45-50
39. Yaoi K., Kondo H., Suzuki M., Noro N., Tsuda S., Mitsuishi Y. Crystallization and preliminary X-ray crystallographic study on a xyloglucan-specific exo- β-glycosidase, oligoxyloglucan reducing-end specific cellobiohydrolase. Acta Crystallogr. D Biol. Crystallogr. 59:2003;1838-1839
40. York W.S., Darvill A.G., Albersheim P. Inhibition of 2, 4-dichlorophenoxyacetic acid-stimulated elongation of pea stem segments by a xyloglucan oligosaccharide. Plant Physiol. 75:1984;295-297
41. 1H-n.m.r. spectroscopy and fast-atom-bombardment mass-spectrometry. Carbohydr. Res. 200:1990;9-31