Chromosome painting between human and lorisiform prosimians: Evidence for the HSA 7/16 synteny in the primate ancestral karyotype

American Journal of Physical Anthropology

Volumn 129, Issue 2, 2006, Pages 250-259

  Nie, Wenhui ^a,b   O'Brien, Patricia C M ^c   Fu, Beiyuan ^c   Wang, Jinhuan ^a   Su, Weiting ^a   Ferguson Smith, Malcolm A ^c   Robinson, Terence J ^d   Yang, Fengtang ^a,c,e,f  

^a INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^c UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^d STELLENBOSCH UNIVERSITY   (South Africa)

^e WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^f KUNMING INSTITUTE OF ZOOLOGY   (China)

Author keywords

Chromosome evolution; In situ hybridization; Phylogeny; Slow loris

Indexed keywords

ANIMAL CELL; ARTICLE; CHROMOSOME; CHROMOSOME PAINTING; EVOLUTION; FEMALE; HUMAN; HUMAN CELL; IN SITU HYBRIDIZATION; KARYOTYPE; MALE; METAPHASE; NONHUMAN; PRIMATE; PROSIMIAN;

ANIMALS; CHROMOSOME PAINTING; CHROMOSOMES; CHROMOSOMES, HUMAN; EVOLUTION, MOLECULAR; HUMANS; KARYOTYPING; LORISIDAE; SYNTENY;

EID: 31344481893     PISSN: 00029483     EISSN: 10968644     Source Type: Journal    
DOI: 10.1002/ajpa.20299     Document Type: Article

References (49)

1. Bender MA, Mettler LE. 1958. Chromosome studies in primates. Science 128:186-190.
2. Bigoni F, Stanyon R, Wimmer R, Schempp W. 2003. Chromosome painting shows that the proboscis monkey (Nasalis larvatus) has a derived karyotype and is phylogenetically nested within Asian colobines. Am J Primatol 60:85-93.
3. Carter NP, Ferguson-Smith ME, Affara NA, Briggs H, Ferguson-Smith MA. 1990. Study of X chromosome abnormality in XX males using bivariate flow karyotype analysis and flow sorted dot blots. Cytometry 11:202-207.
4. de Boer LEM. 1972. Chromosome studies in some primates. Mamm Chrom Newsl 13:4-6.
5. de Boer LEM. 1973a. Studies on the cytogenetics of prosimians. J Hum Evol 2:271-278.
6. de Boer LEM. 1973b. Cytotaxonomy of the Lorisidea (Primates: Prosimii). I. Chromosome studies and karyological relationships in the Galagidae. Genetica 44:155-193.
7. de Boer LEM. 1973c. Cytotaxonomy of the Lorisidea (Primates: Prosimii). II. Chromosome studies in the Lorisidae and karyological relationships within the superfamily. Genetica 44:330-367.
8. Dutrillaux B. 1979. Chromosomal evolution in primates: tentative phylogeny from Microcebus murinas (prosimian) to man. Hum Gent 48:251-314.
9. Dutrillaux B, Couturier J, Warter S, Rumpler Y. 1982. Chromosomal evolution in "Lemurs". VI. Chromosomal banding studies of Galago senegalensis, Galago alleni, Galago demidocii and Euoticus elegantulus. Folia Primatol (Basel) 37:280-296.
10. Egozcue J, Vilarasau de Egozcue M. 1966a. The chromosomes of the slow loeis (Nycticebus coucang). Mamm Chrom Newslett 20:50.
11. Egozcue J, Vilarasau de Egozcue M. 1966b. The chromosome complement of the slow loris (Nycticebus coucang Boddaert, 1785). Primates 7:423-432.
12. Ferguson-Smith MA, Yang F, Rens W, O'Brien PCM. 2005. The impact of chromosome sorting and painting on the comparative analysis of primate genomes. Cytogenet Genome Res 108:12-121.
13. Frönicke L, Wienberg J. 2001. Comparative chromosome painting defines the high rate of karyotype changes between pigs and bovids. Mamm Genome 12:442-449.
14. Garcia M, Miro R, Egozcue J. 1978. Banding patterns of the chromosomes of Nycticebus coucang (Boddaert, 1785). Folia Primatol (Basel) 29:103-106.
15. Hayata I, Sonta S, Itoh M, Kondo N. 1971. Notes on the karyotypes of some prosimians, Lemur Mongoz, Lemur catta, Nycticebus coucang and Galago crassicaudatus. Jpn J Genet 46:61-64.
16. Klinger HP. 1963. The somatic chromosomes of some primates (Tupaia glis, Nycticebus coucang, Tarsius bancanus cercocebus aterrimus, Symphalangus syndactylus). Cytogenet Cell Genet 29:250-252.
17. Korstanje R, O'Brien PCM, Yang F, Rens W, Bosma AA, van Lith HA, van Zutphen LF, Ferguson-Smith MA. 1999. Complete homology maps of the rabbit (Oryctolagus cuniculus) and human by reciprocal chromosome painting. Cytogenet Cell Genet 86:317-322.
18. Li T, O'Brien PCM, Biltueva L, Fu B, Wang J, Ferguson-Simth MA, Graphodatsky AS, Yang F. 2004. Evolution of genome organizations of squirrels (Sciuridae) revealed by cross-species chromosome painting. Chromosome Res 12:317-335.
19. Master JC, Stanyon R, Romagno D. 1987. Standardized Karyotypes for the greater galagos, Galagos crassicaudatus (E. Geoffroy, 1812) and G garnettii (Ogilby, 1838) (Primates: Prosimii). Genetica 75:123-129.
20. Müller S, O'Brien PCM, Ferguson-Smith MA, Wienberg J. 1997. Reciprocal chromosome painting between human and prosimians (Eulemur macaco macaco and E. fulvus mayottensis). Cytogenet Cell Genet 78:260-271.
21. Muller S, Stanyon R, O'Brien PCM, Ferguson-Smith MA, Plesker R, Wienberg J. 1999. Defining the ancestral Karyotype of all primates by multidirectional chromosome painting between tree shrews, lemurs and humans. Chromosoma 108:393-400.
22. Murphy WJ, Sun S, Chen ZQ, Yuhki N, Hirschmann D, Menotti-Raymond M, O'Brien SJ. 2000. A radiation hybrid map of the cat genome: implications for comparative mapping. Genome Res 10:691-702.
23. Murphy WJ, Stanyon R, O'Brien SJ. 2001. Evolution of mammalian genome organization inferred from comparative gene mapping. Genome Biol 2:1-8.
24. Nie W, Liu R, Chen Y, Wang J, Yang F. 1998. Mapping chromosomal homologies between humans and two langurs (Semnopithecus francoisi and S. phayrei) by chromosome painting. Chromosome Res 6:447-453.
25. Nie W, Rens W, Wang J, Yang F. 2001. Conserved chromosome segments in Hylobates hoolock revealed by human and H. leucogenys paint probes. Cytogenet Cell Genet 92:248-253.
26. Nowak RM. 1999. Walker's mammals of the world. Sixth edition, volume I. Baltimore: Johns Hopkins University Press. p 632-793.
27. O'Brien SJ, Stanton R. 1999. Phylogenomics: Ancestral primate viewed. Nature 402:365-366.
28. Rasmussen DT, Nekaris KA. 1998. Evolutionary history of lorisiform primates. Folia Primatol (Basel) 69:250-285.
29. Richard F, Lombard M, Dutrillaux B. 2000. Phylogenetic origin of human chromosomes 7, 16, and 19 and their homologs in placental mammals. Genome Res 10:644-651.
30. Richard F, Messaoudi C, Bonnet-Garnier A, Lombard M, Dutrillaux B. 2003. Highly conserved chromosomes in an Asian squirrel (Menetes berdmorei, Rodentia: Sciuridae) as demonstrated by Zoo-FISH with human probes. Chromosome Res 11:597-603.
31. Robinson TJ, Fu B, Ferguson-Smith MA, Yang F. 2004. Cross-species chromosome painting in the golden mole and elephant shrew: support for the mammalian clades Afrotheria and Afroinsectiphillia but not Afroinsectivora. Proc R Soc Lond [Biol] 271:1477-1484.
32. Rumpler Y, Couturier J, Warter S, Dutrillaux B. 1983. The Karyotype of Galago crassicaudatus is ancestral for Lorisiforms. Folia Primatol (Basel) 40:227-231.
33. Rumpler Y, Warter S, Meier B, Preuschoft H, Dutrillaux B. 1987. Chromosomal phylogeny of three Lorisidae: Loris tardigradus, Nycticebus coucang and Perodicticus potto. Folia Primatol (Basel) 48:216-220.
34. Stanyon R, Master JC, Romagno D. 1987. The chromosomes of Nycticebus coucang (Boddaert, 1785) (Primates: Prosimii). Genetica 75:145-152.
35. Stanyon R, Consigliere S, Muller S, Morescalchi A, Neusser M, Wienberg J. 2000. Fluorescence in situ hybridization (FISH) maps: chromosomal homologies between the dusky titi and squirrel monkey. Am J Primatol 50:95-107.
36. Stanyon R, Koehler U, Consigliere S. 2002. Chromosome painting reveals that galagos have highly derived karyotypes. Am J Phys Anthropol 117:319-326.
37. Stanyon R, Stone G, Garcia M, Frönicke L. 2003a. Reciprocal chromosome painting shows that squirrels, unlike murid rodents, have a highly conserved genome organization. Genomics 82:245-249.
38. Stanyon R, Bonvicino CR, Svartman M, Seuánez HN. 2003b. Chromosome painting in Callicebus lugens, the species with the lowest diploid number (2n = 16) known in primates. Chromosoma 112:201-206.
39. Telenius H, Pelmear AH, Tunnacliffe A, Carter NP, Behmel A, Ferguson-Smith MA, Nordenskjold M, Pfragner R, Ponder B. 1992. Cytogenetic analysis by chromosome painting using DOP-PCR amplified flow-sorted chromosomes. Genes Chromosomes Cancer 4:257-263.
40. Volleth M, Klett C, Kollak A, Dixken C, Winter Y, Just W, Volgel W, Hameisster H. 1999. Zoo-FISH analysis in a species of the order Chiroptera: Glossophaga soricina (Phyllostomidae). Chromosome Res 7:57-64.
41. Warter S, Rumpler Y. 1998. Chromosomal variability in the genus Nycticebus. Folia Primatol (Basel) 69:296-299.
42. Warter S, Hauwy M, Dutrillaux B, Rumpler Y. 2005. Application of molecular cytogenetics for chromosomal evolution of the Lemuriformes (Prosimians). Cytogenet Genome Res 108:197-203.
43. Wienberg J. 2005. Fluorescence in situ hybridization to chromosomes as a tool to understand human and primate genome evolution. Cytogenet Genome Res 108:139-160.
44. Wienberg J, Stanyon R. 1998. Comparative chromosome painting of primate genomes. ILAR J 39:77-91.
45. Yang F, Carter NP, Shi L, Ferguson-Smith MA. 1995. A comparative study of karyotypes of muntjacs by chromosome painting. Chromosoma 103:642-652.
46. Yang F, Müller S, Just R, Ferguson-Smith MA, Wienberg J. 1997. Comparative chromosome painting in mammals: human and the Indian muntjac (Muntiacus muntjak vaginalis). Genomics 39:396-401.
47. Yang F, Alkalaeva EZ, Perelman PL, Pardini AT, Harrison WR, O'Brien PCM, Fu B, Graphodatsky AS, Ferguson-Smith MA, Robinson TJ. 2003. Reciprocal chromosome painting among human, aardvark, and elephant (superorder Afrotheria) reveals the likely eutherian ancestral karyotype. Proc Natl Acad Sci USA 100:1062-1066.
48. Yang F, Fu B, O'Brien PCM, Nie W, Ryder OA, Ferguson-Smith MA. 2004. Refined genome-wide comparative map the domestic horse, donkey and human based on cross-species chromosome painting: insight into the occasional fertility of mules. Chromosome Res 12:65-76.
49. Yu D, Yang F, Liu R. 1997. A comparative chromosome map between human and Hylobates hoolock built by chromosome painting. Acta Genet Sin 24:417-423.