-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul. S.F., Madden, T.L.. Schaffer, A.A., Zhang, J., Zhang, Z., Miller. W., & Lipman, D.J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res., v. 25, pp. 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0019887799
-
Identification of common molecular substances
-
Smith, T.F., & Waterman, M.S. (1981). Identification of common molecular substances, Journal of Molecular Biology, 147, pp. 195-197.
-
(1981)
Journal of Molecular Biology
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
3
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequences
-
Needleman, S., & Wunsch, C. (1970). A general method applicable to the search for similarities in the amino acid sequences, Journal of Molecular Biology, v. 48, pp. 444-453.
-
(1970)
Journal of Molecular Biology
, vol.48
, pp. 444-453
-
-
Needleman, S.1
Wunsch, C.2
-
4
-
-
0034623005
-
T-Coffee: A novel method for multiple sequence alignments
-
Notredame, C., Higgins, D., & Heringa, J. (2000). T-Coffee: A novel method for multiple sequence alignments, Journal of Molecular Biology, v. 302, pp. 205-217.
-
(2000)
Journal of Molecular Biology
, vol.302
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.2
Heringa, J.3
-
5
-
-
0035342091
-
Basic microarray analysis: Grouping and feature reduction
-
Raychaudburi, S., Sutphin, P.D., Chang, J.T., & Altman, R.B. (2001). Basic microarray analysis: grouping and feature reduction, Trends in Biotechnology, v. 19(5), pp. 189-193.
-
(2001)
Trends in Biotechnology
, vol.19
, Issue.5
, pp. 189-193
-
-
Raychaudburi, S.1
Sutphin, P.D.2
Chang, J.T.3
Altman, R.B.4
-
6
-
-
0035704901
-
Profiling gene expression using Onto-Express
-
Khatri, P., Draghici, S., Ostermeier, G.C., & Krawetz, S.A. (2002). Profiling gene expression using Onto-Express, Genomics, v. 79(2), pp. 266-270.
-
(2002)
Genomics
, vol.79
, Issue.2
, pp. 266-270
-
-
Khatri, P.1
Draghici, S.2
Ostermeier, G.C.3
Krawetz, S.A.4
-
7
-
-
0035999974
-
Clustering gene expression data using a graph-theoretic approach: An application of minimum spanning trees
-
Xu Y., Olman, V., & Xu, D. (2002). Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees, Bioinformatics, v. 18(4), pp. 536-545.
-
(2002)
Bioinformatics
, vol.18
, Issue.4
, pp. 536-545
-
-
Xu, Y.1
Olman, V.2
Xu, D.3
-
8
-
-
1542473171
-
Application of independent component analysis to microarrays
-
Lee S.-I., & Bazoglu, S. (2003). Application of independent component analysis to microarrays, Genome Biology, v. 4, pp. 1-21.
-
(2003)
Genome Biology
, vol.4
, pp. 1-21
-
-
Lee, S.-I.1
Bazoglu, S.2
-
9
-
-
2442709350
-
-
Grasso, C., Modrek, B., Xing, Y., & Lee, C. (2004). Genome-Wide Detection of Alternative Splicing in Expressed Sequences Using Partial Order Multiple Sequence Alignment Graphs, Pacific Symposium on Biocomputing, v. 9, pp. 29-41.
-
(2004)
Genome-Wide Detection of Alternative Splicing in Expressed Sequences Using Partial Order Multiple Sequence Alignment Graphs, Pacific Symposium on Biocomputing
, vol.9
, pp. 29-41
-
-
Grasso, C.1
Modrek, B.2
Xing, Y.3
Lee, C.4
-
10
-
-
2442656908
-
Extensive Search for Discriminative Features of Alternative Splicing
-
Sakai, H., & Maruyama, O. (2004). Extensive Search for Discriminative Features of Alternative Splicing, Pacific Symposium on Biocomputing, v. 9, pp. 54-65.
-
(2004)
Pacific Symposium on Biocomputing
, vol.9
, pp. 54-65
-
-
Sakai, H.1
Maruyama, O.2
-
11
-
-
31344458423
-
-
(www.ornl.gov/TechResources/Human_Genome/glossary/glossary_g.html)
-
(www.ornl.gov/TechResources/Human_Genome/glossary/glossary_g.html).
-
-
-
-
12
-
-
0036529479
-
An efficient algorithm for large-scale detection of protein families
-
Enright, A.J., Van Dongen, S., & Ouzounis, C.A. (2002). An efficient algorithm for large-scale detection of protein families, Nucleic Acids Research, v. 30(7), pp. 1575-1584.
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.7
, pp. 1575-1584
-
-
Enright, A.J.1
Van Dongen, S.2
Ouzounis, C.A.3
-
13
-
-
11144298720
-
Taxonomy-based soft similarity measures in bioinformatics
-
Keller, J., Popescu, M., & Mitchell, J. (2004). Taxonomy-based soft similarity measures in bioinformatics, Proc., IEEE Int Conf. on Fuzzy Systems, v. 1, pp. 23-30.
-
(2004)
Proc., IEEE Int Conf. on Fuzzy Systems
, vol.1
, pp. 23-30
-
-
Keller, J.1
Popescu, M.2
Mitchell, J.3
-
14
-
-
31344454766
-
Gene Ontology-based Knowledge Discovery: GO Similarity Measures based on Linear Order Statistics
-
in review
-
Keller, J.M., Bezdek, J.C., Popescu, M., Pal, N.R., Mitchell, J.C., & Huband, J. (2005). Gene Ontology-based Knowledge Discovery: GO Similarity Measures based on Linear Order Statistics, in review, Inter. J. of Uncertainty, Fuzziness, and Knowledge-based Systems.
-
(2005)
Inter. J. of Uncertainty, Fuzziness, and Knowledge-based Systems
-
-
Keller, J.M.1
Bezdek, J.C.2
Popescu, M.3
Pal, N.R.4
Mitchell, J.C.5
Huband, J.6
-
16
-
-
0003444099
-
-
Norwell, MA: Kluwer
-
Bezdek, J.C., Keller, J.M., Krishnapuram, R., & Pal, N.R. (1999). Fuzzy Models and Algorithms for Pattern Recognition and Image Processing. Norwell, MA: Kluwer.
-
(1999)
Fuzzy Models and Algorithms for Pattern Recognition and Image Processing
-
-
Bezdek, J.C.1
Keller, J.M.2
Krishnapuram, R.3
Pal, N.R.4
-
18
-
-
0038014879
-
Co-clustering of biological networks and gene expression data
-
Hanisch, D., Zien, A.. Zimmer, R., & Lengauer, T. (2002). Co-clustering of biological networks and gene expression data, Bioinformatics, v. 18 (Supp. 1), pp. S145-S154.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Hanisch, D.1
Zien, A.2
Zimmer, R.3
Lengauer, T.4
-
19
-
-
0037433059
-
A literature-based method for assessing the functional coherence of a gene group
-
Raychadhuri, S., & Altman, R.B. (2003). A literature-based method for assessing the functional coherence of a gene group, Bioinformatics, v. 19(3), pp. 396-401.
-
(2003)
Bioinformatics
, vol.19
, Issue.3
, pp. 396-401
-
-
Raychadhuri, S.1
Altman, R.B.2
-
20
-
-
0036207548
-
Inference from clustering: Application to gene-expression time series
-
Dougherty, E.R., Barrera, J., Brun, M., Kim, S., Cesar, R.M., Chen, Y., Bittner, M., & Trent, J.M. (2002). Inference from clustering: Application to gene-expression time series, J. Comp. Biol., v. 9(1), pp. 105-126.
-
(2002)
J. Comp. Biol.
, vol.9
, Issue.1
, pp. 105-126
-
-
Dougherty, E.R.1
Barrera, J.2
Brun, M.3
Kim, S.4
Cesar, R.M.5
Chen, Y.6
Bittner, M.7
Trent, J.M.8
-
21
-
-
1842450622
-
Gene Clustering Based on Cluster wide Mutual Information
-
Zhou, X., Wang, X., Dougherty, E.R.. Russ, D., & Suh, E. (2004). Gene Clustering Based on Cluster wide Mutual Information, J. Comp. Biol. v. 11(1), pp. 147-161.
-
(2004)
J. Comp. Biol.
, vol.11
, Issue.1
, pp. 147-161
-
-
Zhou, X.1
Wang, X.2
Dougherty, E.R.3
Russ, D.4
Suh, E.5
-
22
-
-
0033027794
-
Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
-
Tamayo, P., Slonim, D., Mesirov, J., Zhu, Q., Kitareewan, S., Dmitrovsky, E., Lander, E.S., & Golub, T.R. (1999). Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation, Proc. Natl. Acad. Sci. USA, v. 96, pp. 2907-2912.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 2907-2912
-
-
Tamayo, P.1
Slonim, D.2
Mesirov, J.3
Zhu, Q.4
Kitareewan, S.5
Dmitrovsky, E.6
Lander, E.S.7
Golub, T.R.8
-
23
-
-
0033028596
-
Systematic determination of genetic network architecture
-
Tavazoie. S., Hughes, J.D., Campbell, M.J., Cho, R.J., & Church, G.M. (1999). Systematic determination of genetic network architecture, Nature Genet., v. 22, pp. 281-285.
-
(1999)
Nature Genet.
, vol.22
, pp. 281-285
-
-
Tavazoie, S.1
Hughes, J.D.2
Campbell, M.J.3
Cho, R.J.4
Church, G.M.5
-
24
-
-
0032728081
-
Clustering gene expression patterns
-
Ben-Dor, A., Shamir, R., & Yakhini, Z. (1999). Clustering gene expression patterns, J. Comp. Biol., v. 6(3-4), pp. 281-297.
-
(1999)
J. Comp. Biol.
, vol.6
, Issue.3-4
, pp. 281-297
-
-
Ben-Dor, A.1
Shamir, R.2
Yakhini, Z.3
-
25
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen, M.B., Spellman, P.T., Brown, P.O., & Botstein, D. (1998). Cluster analysis and display of genome-wide expression patterns, Proc. Natl. Acad. Sci. USA, v. 95, pp. 14863-14868.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
27
-
-
0028667335
-
NERF c-Means: Non-Euclidean relational fuzzy clustering
-
Hathaway, R.J., & Bezdek, J.C. (1994). NERF c-Means: Non-Euclidean relational fuzzy clustering, Pattern Recognition, v. 27(3), pp. 429-437.
-
(1994)
Pattern Recognition
, vol.27
, Issue.3
, pp. 429-437
-
-
Hathaway, R.J.1
Bezdek, J.C.2
-
28
-
-
0024475955
-
Relational Duals of the c-Means Clustering Algorithms
-
Hathaway, R.J., Davenport, J.W., & Bezdek, J.C. (1989). Relational Duals of the c-Means Clustering Algorithms, Pattern Recogition, v. 22(2), pp. 205-212.
-
(1989)
Pattern Recogition
, vol.22
, Issue.2
, pp. 205-212
-
-
Hathaway, R.J.1
Davenport, J.W.2
Bezdek, J.C.3
-
29
-
-
0036082940
-
VAT: A Tool for Visual Assessment of (Cluster) Tendency
-
Bezdek, J.C., & Hathaway, R.J. (2002). VAT: A Tool for Visual Assessment of (Cluster) Tendency, Proc. IJCNN 2002, pp. 2225-2230.
-
(2002)
Proc. IJCNN 2002
, pp. 2225-2230
-
-
Bezdek, J.C.1
Hathaway, R.J.2
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