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Volumn 13, Issue 3-4, 2005, Pages 337-362

Gene ontology-based knowledge discovery through fuzzy cluster analysis

Author keywords

ENSEMBL; Gene Ontology (GO); Linear Combination of Order Statistics (LOS); Non Euclidean relational fuzzy c Means; Relational clustering; SWISS PROT; Visual Assessment of Clustering Tendency; Visualization of gene families

Indexed keywords


EID: 31344453944     PISSN: 10615369     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (13)

References (29)
  • 2
    • 0019887799 scopus 로고
    • Identification of common molecular substances
    • Smith, T.F., & Waterman, M.S. (1981). Identification of common molecular substances, Journal of Molecular Biology, 147, pp. 195-197.
    • (1981) Journal of Molecular Biology , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 3
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino acid sequences
    • Needleman, S., & Wunsch, C. (1970). A general method applicable to the search for similarities in the amino acid sequences, Journal of Molecular Biology, v. 48, pp. 444-453.
    • (1970) Journal of Molecular Biology , vol.48 , pp. 444-453
    • Needleman, S.1    Wunsch, C.2
  • 4
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: A novel method for multiple sequence alignments
    • Notredame, C., Higgins, D., & Heringa, J. (2000). T-Coffee: A novel method for multiple sequence alignments, Journal of Molecular Biology, v. 302, pp. 205-217.
    • (2000) Journal of Molecular Biology , vol.302 , pp. 205-217
    • Notredame, C.1    Higgins, D.2    Heringa, J.3
  • 6
    • 0035704901 scopus 로고    scopus 로고
    • Profiling gene expression using Onto-Express
    • Khatri, P., Draghici, S., Ostermeier, G.C., & Krawetz, S.A. (2002). Profiling gene expression using Onto-Express, Genomics, v. 79(2), pp. 266-270.
    • (2002) Genomics , vol.79 , Issue.2 , pp. 266-270
    • Khatri, P.1    Draghici, S.2    Ostermeier, G.C.3    Krawetz, S.A.4
  • 7
    • 0035999974 scopus 로고    scopus 로고
    • Clustering gene expression data using a graph-theoretic approach: An application of minimum spanning trees
    • Xu Y., Olman, V., & Xu, D. (2002). Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees, Bioinformatics, v. 18(4), pp. 536-545.
    • (2002) Bioinformatics , vol.18 , Issue.4 , pp. 536-545
    • Xu, Y.1    Olman, V.2    Xu, D.3
  • 8
    • 1542473171 scopus 로고    scopus 로고
    • Application of independent component analysis to microarrays
    • Lee S.-I., & Bazoglu, S. (2003). Application of independent component analysis to microarrays, Genome Biology, v. 4, pp. 1-21.
    • (2003) Genome Biology , vol.4 , pp. 1-21
    • Lee, S.-I.1    Bazoglu, S.2
  • 10
    • 2442656908 scopus 로고    scopus 로고
    • Extensive Search for Discriminative Features of Alternative Splicing
    • Sakai, H., & Maruyama, O. (2004). Extensive Search for Discriminative Features of Alternative Splicing, Pacific Symposium on Biocomputing, v. 9, pp. 54-65.
    • (2004) Pacific Symposium on Biocomputing , vol.9 , pp. 54-65
    • Sakai, H.1    Maruyama, O.2
  • 11
    • 31344458423 scopus 로고    scopus 로고
    • (www.ornl.gov/TechResources/Human_Genome/glossary/glossary_g.html)
    • (www.ornl.gov/TechResources/Human_Genome/glossary/glossary_g.html).
  • 12
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for large-scale detection of protein families
    • Enright, A.J., Van Dongen, S., & Ouzounis, C.A. (2002). An efficient algorithm for large-scale detection of protein families, Nucleic Acids Research, v. 30(7), pp. 1575-1584.
    • (2002) Nucleic Acids Research , vol.30 , Issue.7 , pp. 1575-1584
    • Enright, A.J.1    Van Dongen, S.2    Ouzounis, C.A.3
  • 18
    • 0038014879 scopus 로고    scopus 로고
    • Co-clustering of biological networks and gene expression data
    • Hanisch, D., Zien, A.. Zimmer, R., & Lengauer, T. (2002). Co-clustering of biological networks and gene expression data, Bioinformatics, v. 18 (Supp. 1), pp. S145-S154.
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Hanisch, D.1    Zien, A.2    Zimmer, R.3    Lengauer, T.4
  • 19
    • 0037433059 scopus 로고    scopus 로고
    • A literature-based method for assessing the functional coherence of a gene group
    • Raychadhuri, S., & Altman, R.B. (2003). A literature-based method for assessing the functional coherence of a gene group, Bioinformatics, v. 19(3), pp. 396-401.
    • (2003) Bioinformatics , vol.19 , Issue.3 , pp. 396-401
    • Raychadhuri, S.1    Altman, R.B.2
  • 21
    • 1842450622 scopus 로고    scopus 로고
    • Gene Clustering Based on Cluster wide Mutual Information
    • Zhou, X., Wang, X., Dougherty, E.R.. Russ, D., & Suh, E. (2004). Gene Clustering Based on Cluster wide Mutual Information, J. Comp. Biol. v. 11(1), pp. 147-161.
    • (2004) J. Comp. Biol. , vol.11 , Issue.1 , pp. 147-161
    • Zhou, X.1    Wang, X.2    Dougherty, E.R.3    Russ, D.4    Suh, E.5
  • 22
    • 0033027794 scopus 로고    scopus 로고
    • Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
    • Tamayo, P., Slonim, D., Mesirov, J., Zhu, Q., Kitareewan, S., Dmitrovsky, E., Lander, E.S., & Golub, T.R. (1999). Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation, Proc. Natl. Acad. Sci. USA, v. 96, pp. 2907-2912.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 2907-2912
    • Tamayo, P.1    Slonim, D.2    Mesirov, J.3    Zhu, Q.4    Kitareewan, S.5    Dmitrovsky, E.6    Lander, E.S.7    Golub, T.R.8
  • 24
    • 0032728081 scopus 로고    scopus 로고
    • Clustering gene expression patterns
    • Ben-Dor, A., Shamir, R., & Yakhini, Z. (1999). Clustering gene expression patterns, J. Comp. Biol., v. 6(3-4), pp. 281-297.
    • (1999) J. Comp. Biol. , vol.6 , Issue.3-4 , pp. 281-297
    • Ben-Dor, A.1    Shamir, R.2    Yakhini, Z.3
  • 27
    • 0028667335 scopus 로고
    • NERF c-Means: Non-Euclidean relational fuzzy clustering
    • Hathaway, R.J., & Bezdek, J.C. (1994). NERF c-Means: Non-Euclidean relational fuzzy clustering, Pattern Recognition, v. 27(3), pp. 429-437.
    • (1994) Pattern Recognition , vol.27 , Issue.3 , pp. 429-437
    • Hathaway, R.J.1    Bezdek, J.C.2
  • 28
    • 0024475955 scopus 로고
    • Relational Duals of the c-Means Clustering Algorithms
    • Hathaway, R.J., Davenport, J.W., & Bezdek, J.C. (1989). Relational Duals of the c-Means Clustering Algorithms, Pattern Recogition, v. 22(2), pp. 205-212.
    • (1989) Pattern Recogition , vol.22 , Issue.2 , pp. 205-212
    • Hathaway, R.J.1    Davenport, J.W.2    Bezdek, J.C.3
  • 29
    • 0036082940 scopus 로고    scopus 로고
    • VAT: A Tool for Visual Assessment of (Cluster) Tendency
    • Bezdek, J.C., & Hathaway, R.J. (2002). VAT: A Tool for Visual Assessment of (Cluster) Tendency, Proc. IJCNN 2002, pp. 2225-2230.
    • (2002) Proc. IJCNN 2002 , pp. 2225-2230
    • Bezdek, J.C.1    Hathaway, R.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.