Genes expressed in Japanese flounder Paralichthys olivaceus spleen: Analysis of genes involved in immune function

Fisheries Science

Volumn 71, Issue 6, 2005, Pages 1304-1323

  Arma, Nur Rahmawaty ^a   Hirono, Ikuo ^a   Aoki, Takashi ^a  

^a TOKYO UNIVERSITY OF MARINE SCIENCE AND TECHNOLOGY   (Japan)

Author keywords

cDNA sequence; Expressed sequence tag; Japanese flounder; Spleen

Indexed keywords

PARALICHTHYS OLIVACEUS; PLEURONECTOIDEI;

EID: 31144479594     PISSN: 09199268     EISSN: 14442906     Source Type: Journal    
DOI: 10.1111/j.1444-2906.2005.01097.x     Document Type: Article

References (33)

1. Adams MD, Kelley JM, Gocayne JD, Dubnick M, Polymeropoulos MH, Xiao H, Merril CR, Wu A, Olde B, Moreno RF, Kerlavage AR, McCombie WR, Venter JC. Complementary DNA sequencing: expressed sequence tags and human genome project. Science 1991; 252: 1651-1656.
2. Ju Z, Karsi A, Kocabas A, Patterson A, Li P, Cao D, Dunham R, Liu Z. Transcriptome analysis of channel catfish (Ictalurus punctatus): genes and expression profile from the brain. Gene 2000; 261: 373-382.
3. Kocabas AM, Li P, Cao D, Karsi A, He C, Patterson A, Ju Z, Dunham RA, Liu Z. Expression profile of the channel catfish spleen: Analysis of genes involved in immune functions. Mar. Biotechnol. 2002; 4: 526-536.
4. Karsi A, Cao D, Li P, Patterson A, Kocabas A, Feng J, Ju Z, Mickett KD, Liu Z. Transcriptome analysis of channel catfish (Ictalurus punctatus): initial analysis of gene expression and microsatellite-containing cDNAs in the skin. Gene 2002; 285: 157-168.
5. Lockart DJ, Winzeler EA. Genomics, gene expression and DNA arrays. Nature 2000; 405: 827-836.
6. McL Press C, Evensen Ø. The morphology of the immune system in teleost fishes. Fish Shellfish Immunol. 1999; 9: 309-318.
7. Zapata AG, Chibá A, Varas A. Cells and tissues of the immune system of fish. In: Iwama G, Nakanishi T (eds). The Fish Immune System. Organism, Pathogen, and Environment. Academic Press, San Diego. 1996; 1-62.
8. Kaattari SL, Piganelli JD. The specific immune response: humoral defense. In: Iwama G, Nakanishi T (eds). The Fish Immune System. Organism, Pathogen, and Environment. Academic Press, San Diego. 1996; 207-254.
9. Inoue S, Nam BH, Hirono I, Aoki T. A survey of expressed genes in Japanese flounder (Paralichthys olivaceus) liver and spleen. Mol. Mar. Biol. Biotechnol. 1997; 6: 376-380.
10. Douglas SE, Tsoi SCM, Penny S, Melville K, Reith ME, Ewart KV. Expressed sequenced tags - A snapshot of the fish genome. In: Shimizu N, Aoki T, Hirono I, Takashima F (eds). Aquatic Genomics. Steps Toward a Great Future. Springer-Verlag, Tokyo. 2003; 115-127.
11. Sambrook J, Russel DW. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory, New York. 2001.
12. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J. Mol. Biol. 1990; 215: 403-410.
13. Adams MD, Kerlavage AR, Fleischmann RD, Fuldner RA, Bult CJ, Lee NH, Kirkness EF, Weinstock KG, Gocayne JD, White O, Sutton G, Blake JA, Brandon RC, Chiu MW, Clayton RA, Cline RT, Cotton MD, Earle-Hughes J, Fine LD, FitzGerald LM, FitzHugh WM, Fritchman JL, Geoghagen NSM, Glodek A, Gnehm CL, Hanna MC, Hedblom E, Hinkle PS Jr, Kelley JM, Kilmek KM, Kelley JC, Liu LI, Marmaros SM, Merrick JM, Moreno-Palanques RF, McDonald LA, Nguyen DT, Pellegrino SM, Phillips CA, Ryder SE, Scott JL, Saudek DM, Shirley R, Small KV, Spriggs TA, Utterback TR, Weidman JF, Li Y, Barthlow R, Bednarik DP, Cao L, Cepeda MA, Coleman TA, Collins EJ, Dimke D, Feng P, Ferrie A, Fischer C, Hastings GA, He WW, Hu JS, Huddleston KA, Greene JM, Gruber J, Hudson P, Kim A, Kozak DL, Kunsch C, Ji H, Li H, Meissner PS, Olsen H, Raymond L, Wei YF, Wing J, Xu C, Yu GL, Ruben SM, Dillon PJ, Fannon MR, Rosen CA, Haseltine WA, Fields C, Fraser CM, Venter JC. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. Nature 1995; 377: 3-174.
14. Khattiya R, Hirono I, Aoki T. Molecular cloning, gene structure and expression of two chemokines from Japanese flounder Paralichthys olivaceus. Fish. Sci. 2003; 69: 1065-1074.
15. Khattiya R, Ohira T, Hirono I, Aoki T. Identification of a novel Japanese flounder (Paralichthys olivaceus) CC chemokine gene and an analysis of its function. Immunogenet 2004; 55: 763-769.
16. Nehyba J, Hrdlièková R, Burnside J, Bose HR Jr. A novel interferon regulatory factor (IRF), IRF-10, has a unique role in immune defense and is induced by the v-rel oncoprotein. Mol. Cell. Biol. 2002; 22: 3942-3957.
17. Bhandari V, Palfree RGE, Bateman A. Isolation and sequence of the granulin precursor cDNA from human bone marrow reveals tandem cysteine-rich granulin domains. Proc. Natl. Acad. Sci. USA 1992; 89: 1715-1719.
18. Bhandari V, Giaid A, Bateman A. The complementary deoxyribonucleic acid sequence, tissue distribution, and cellular localization of the rat granulin precursor. Endocrinology 1993; 6: 2682-2689.
19. Strong SJ, Mueller MG, Litman RT, Hawke NA, Haire RN, Miracle AL, Rast JP, Amemiya CT, Litman GW. A novel multigene family encodes diversified variable regions. Proc. Natl Acad. Sci. USA 1999; 96: 15 080-15 085.
20. Yoder JA, Mueller MG, Wei S, Corliss BC, Prather DM, Willis T, Litman RT, Djeu JY, Litman GW. Immune-type receptor genes in zebrafish share genetic and functional properties with genes encoded by the mammalian leukocyte receptor cluster. Proc. Natl. Acad. Sci. USA 2001; 98: 6771-6776.
21. Hawke NA, Yoder JA, Haire RN, Mueller MG, Litman RT, Miracle AL, Stuge T, Shen L, Miller N, Litman GW. Extraordinary variation in diversified family of immune-type receptor genes. Proc. Natl. Acad. Sci. USA 2001; 8: 13 832-13 837.
22. Yoder JA, Mueller MG, Nichols KM, Ristow SS, Thorgaard GH, Ota T, Litman GW. Cloning novel immune-type inhibitor receptors from the rainbow trout, Oncorhynchus mykiss. Immunogenet. 2002; 54: 662-670.
23. Steiner H, Duff K, Capell A, Romig H, Grim MG, Lincoln S, Hardy J, Yu X, Picciano M, Fechteler K, Citron M, Kopan R, Pesold B, Keck S, Baader M, Tomita T, Iwatsubo T, Baumeister R, Haass C. A loss of function mutation of presenilin-2 interferes with amyloid β-peptide production and notch signaling. J. Biol. Chem. 1999; 274: 28 669-28 673.
24. Weihofen A, Binns K, Lemberg MK, Ashman K, Martoglio B. Identification of signal peptide peptidase, a presenilin-type aspartic protease. Science 2002; 296: 2215-2218.
25. Van Muiswinkel WB, Lamers CHJ, Rombout JHWM. Structural and functional aspects of the spleen in bony fish. Res. Immunol. 1991; 142: 362-366.
26. Akashi K, He X, Chen J, Iwasaki H, Niu C, Steenhard B, Zhang J, Haug J, Li L. Transcriptional accessibility for genes of multiple tissues and hematopoietic lineages is hierarchically controlled during early hematopoiesis. Blood 2003; 101: 383-390.
27. Yamashita M, Ojima N, Sakamoto T. Molecular cloning and cold-inducible gene expression of ferritin H subunit isoforms in rainbow trout cells. J. Biol. Chem. 1996; 271: 26908-26913.
28. Mignogna G, Chiaraluce R, Consalvi V, Cavallo S, Stefanini S, Chiancone E. Ferritin from the spleen of the Antarctic teleost Trematomus bernacchii is an M-type homopolymer. Eur. J. Biochem. 2002; 269: 1600-1606.
29. Arma NR, Hirono I, Aoki T. Identification of genes expressed in the liver of Japanese flounder (Paralichthys olivaceus) by expressed sequence tags. Fish. Sci. 2005; 71: 504-518.
30. Aoki T, Nam BH, Hirono I, Yamamoto E. Sequences of 596 cDNA clones (565 977 bp) of Japanese flounder (Paralichthys olivaceus) leukocytes infected with hirame rhabdovirus. Mar. Biotechnol. 1999; 1: 477-488.
31. Nam BH, Yamamoto E, Hirono I, Aoki T. A survey of expressed genes in the leukocytes of Japanese flounder, Paralichthys olivaceus, infected with Hirame rhabdovirus. Dev. Comp. Immunol. 2000; 24: 13-24.
32. Nam BH, Hirono I, Aoki T. Bulk isolation of immune response-related genes by expressed sequenced tags of Japanese flounder Paralichthys olivaceus leucocytes stimulated with Con A/PMA. Fish Shellfish Immunol. 2003; 14: 467-476.
33. Arma NR, Hirono I, Aoki T. Characterization of expressed genes in kidney cells of Japanese flounder Paralichthys olivaceus following treatment with ConA/PMA and LPS. Fish Pathol. 2004; 39: 189-196.