Survey of glycine-rich proteins (GRPs) in the Eucalyptus expressed sequence tag database (ForEST)

Genetics and Molecular Biology

Volumn 28, Issue 3 SUPPL., 2005, Pages 608-624

  Bocca, Silvia Nora ^a   Magioli, Claudia ^a   Mangeon, Amanda ^a   Junqueira, Ricardo Magrani ^a   Cardeal, Vanessa ^a   Margis, Rogério ^a   Sachetto Martins, Gilberto ^a  

^a FEDERAL UNIVERSITY OF RIO DE JANEIRO   (Brazil)

Author keywords

Eucalyptus; Glycine rich; GRP

Indexed keywords

COMPLEMENTARY DNA; GLYCINE; VEGETABLE PROTEIN;

ANTHER; ARTICLE; CONTROLLED STUDY; DATA BASE; DNA LIBRARY; EUCALYPTUS; EXPRESSED SEQUENCE TAG; FOREST DATABASE; GENE EXPRESSION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHLOEM; PLANT EPIDERMIS; PLANT ROOT; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN LOCALIZATION; PROTEIN STRUCTURE; REGULATORY MECHANISM; TISSUE SPECIFICITY; UNINDEXED SEQUENCE; XYLEM;

EUCALYPTUS; MAMMALIA;

EID: 30844439441     PISSN: 14154757     EISSN: 16784685     Source Type: Journal    
DOI: 10.1590/s1415-47572005000400016     Document Type: Article

References (44)

1. Albà MM, Culiáñez-Macià FA, Goday A, Freire MA, Nadal, B and Pagès M (1994) The maize RNA-binding protein, MA16, is a nucleolar protein located in the dense fibrillar component. Plant J 6:825-834.
2. Albà MM and Pagès M (1998) Plant proteins containing the RNA-recognition motif. Trends Plant Sci 3:15-21.
3. Allagulova ChR, Gimalov FR, Shakirova FM, and Vakhitov VA (2003) The Plant Dehydrins: Structure and Putative Functions. Biochemistry (Mosc) 68:945-951.
4. Allona I, Quinn M, Shoop I, Swope K, St Cyr S, Carlis J, Rield J, Retzel E, Campbell M, Sedero R and Whetten RW (1998) Analysis of xylem formation in pine by cDNA sequencing. Proc Natl Acad Sci USA 95:9693-9698.
5. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W and Lipman DJ (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25:3389-3402.
6. Bagni C and Lapeyre B (1998) Garlp binds to the small nucleolar RNAs snR10 and snR30 in vitro through a nontypical RNA binding element. J Biol Chem 273:10868-10873.
7. Cassab GI (1998) Plant cell wall proteins. Annu Rev Plant Physiol Plant Mol Biol 49:281-309.
8. Condit CM and Meagher RB (1986) A gene encoding a novel glycine-rich structural protein of petunia. Nature 323:178-181.
9. Condit CM (1993) Developmental expression and localization of petunia glycine-rich protein 1. Plant Cell 5:277-288.
10. de Oliveira DE, Franco LO, Simoens C, Seurink J, Coppieters J, Botterman J and van Montagu M (1993) Inflorescence-specific genes from Arabidopsis thaliana encoding glycine-rich proteins. Plant J 3:495-507.
11. Ferreira MA, Almeira-Engler J, Miguens FC, van Montagu M, Engler G and de Oliveira DE (1997) Oleosin gene expression in Arabidopsis thaliana coincides with accumulation of lipids in plastids and cytoplasmic bodies. Plant Physiol Biochem 35:729-739.
12. Franco LO, de O Manes CL, Hamidi S, Sachetto-Martins G and de Oliveira E (2002) Distal regulatory regions restrict the expression of cis-linked genes to the tapetal cells. FEBS Lett 517:13-18.
13. Freire MA and Pages M (1995) Functional characterization of the maize RNA binding protein MA16. Plant Mol Biol 29:797-807.
14. Fusaro A, Mangeon A, Magrani Junqueira R, Benício Rocha CA, Cardoso Coutinho T, Margis R and Sachetto-Martins G (2001) Classification, expression pattern and comparative analysis of sugarcane expressed sequences tags (ESTs) encoding glycine-rich proteins (GRPs). Genet Mol Biol 24:263-273.
15. Hanano S, Sugita M and Sugiura M (1996) Isolation of a novel RNA-binding protein and its association with a large ribonucleoprotein particle present in the nucleoplasm of tobacco cells. Plant Mol Biol 31:57-68.
16. Hirose T, Sugita M and Sugiura M (1993) cDNA structure, expression and nucleic acid-binding properties of three RNA-binding proteins in tobacco: Occurrence of tissue-specific alternative splicing. Nucleic Acids Res 21:3981-3987.
17. Karlson D, Nakaminami K, Toyomasu T and Imai R (2002) A cold-regulated nucleic acid-binding protein of winter wheat shares a domain with bacterial cold-shock proteins. J Biol Chem 277:35248-35256.
18. Karlson D and Imai R (2003) Conservation of the cold shock domain protein family in plants. Plant Physiol 131:12-15.
19. Keller B, Schmid J and Lamb CJ (1989) Vascular expression of a bean cell wall glycine-rich protein - β-glucuronidase gene fusion in transgenic tobacco. Embo J 8:1309-1314.
20. Keller B and Heierli D (1994) Vascular expression of the grp1.8 promoter is controlled by three specific regulatory elements and one unspecific activating sequence. Plant Mol Biol 26:747-756.
21. Krecic AM and Swanson MS (1999) hnRNP complexes: Composition, structure, and function. Curr Opin Cell Biol 11:363-371.
22. Kumar S, Tamura K, Jacobsen I and Nei M (2000) MEGA2: Molecular Evolutionary Genetics Analysis, version 2.0. Pennsylvania and Arizona State Universities, University Park, Pennsylvania and Tempe, Arizona.
23. Lambermon MH, Fu Y, Wieczorek Kirk DA, Dupasquier M, Filipowicz W and Lorkovic ZJ (2002) UBA1 and UBA2, two proteins that interact with UBP1, a multifunctional effector of pre-mRNA maturation in plants. Mol Cell Biol 22:4346-4357.
24. Le Provost G, Paiva J, Pot D, Brach J and Plomion C (2003) Seasonal variation in transcript accumulation in wood-forming tissues of maritime pine (Pinus pinasterAit.) with emphasis on a cell wall glycine-rich protein. Planta 217:820-830.
25. Lorkovic ZJ and Barta A (2002) Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana. Nucleic Acids Res 30:623-635.
26. Magioli C, Barrôco RM, Benício Rocha CA, de Santiago-Fernandes LD, Mansur E, Engler G, Margis-Pinheiro M and Sachetto-Martins G (2001) Somatic embryo formation in Arabidopsis and eggplant is associated with expression of a glycine-rich protein gene (Atgrp-5). Plant Sci 161:559-567.
27. Matsushima N, Creutz CE and Kretsinger RH (1990) Polyproline, beta-turn helices. Novel secondary structures proposed for the tandem repeats within rhodopsin, synaptophysin, synexin, gliadin, RNA, polymerase II, hordein, and gluten. Proteins 7:125-155.
28. Murphy DJ and Ross JHE (1998) Biosynthesis, targeting and processing of oleosin-like proteins, which are major pollen coat components in Brassica napus. Plant J 13:1-16.
29. Murphy DJ, Hernández-Pinzón I and Patel K (2001) Role of lipid bodies and lipid-body proteins in seeds and other tissues. J Plant Physiol 158:471-478.
30. Ni Z, Sun Q, Liu Z, Wu L and Wang X (2000) Identification of a hybrid-specific expressed gene encoding novel RNA-binding protein in wheat seedling leaves using differential display of mRNA. Mol Gen Genet 263:934-938.
31. Obokata J, Ohme M and Hayashida N (1991) Nucleotide sequence of a cDNA clone encoding a putative glycine-rich protein of 19.7 kDa in Nicotiana sylvestris. Plant Mol Biol 17:953-955.
32. Park AR, Cho SK, Yun UJ, Jin MY, Lee SH, Sachetto-Martins G and Park OK (2001) Interaction of the Arabidopsis Receptor Protein Kinase Wakl with a Glycine-rich Protein, AtGRP-3. J Biol Chem 276:26688-2669.
33. Ringli C, Keller B and Ryser U (2001) Glycine-rich proteins as structural components of plant cell walls. Cell Mol Life Sci 58:1430-1441.
34. Ryser U and Keller B (1992) Ultrastructural localization of bean glycine-rich protein in unlignified primary walls of protoxylem cells. Plant Cell 4:773-783.
35. Ryser U, Schorderet M, Zhao GF, Studer D, Ruel K, Hauf G and Keller B (1997) Structural cell wall proteins in protoxylem development: Evidence for a repair process mediated by a glycine-rich protein. Plant J 12:97-111.
36. Sachetto-Martins G, Fernandes LD, Felix DB and de Oliveira DE (1995) Preferential transcriptional activity of a glycine-rich protein gene from Arabidopsis thaliana in protoderm derived cells. Int J Plant Sci 156:460-470.
37. Sachetto-Martins G, Franco LO and de Oliveira DE (2000) Plant glycine-rich proteins: A family or just proteins with a common motif? Biochim Biophys Acta 1492:1-14.
38. Sandal NN, Bojsen K, Richter H, Sengupta-Gopalan C and Marcker KA (1992) The nodulin 24 protein family shows similarity to a family of glycine-rich plant proteins. Plant Mol Biol 18:607-610.
39. Showalter AM (1993) Structure and function of plant cell wall proteins. Plant Cell 5:9-23.
40. Sitnikova T, Rzhetsky A and Nei M (1995) Interior-branch and bootstrap tests of phylogenetic trees. Mol Biol Evol 12:319-333.
41. Thompson JD, Higgins DG and Gibson TJ (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680.
42. Verica JA and He ZH (2002) The cell wall-associated kinase (WAK) and WAK-like kinase gene family. Plant Physiol 129:455-459.
43. Welin BV, Olson A, Nylander M and Palva ET (1994) Characterization and differential expression of dhn/lea/rab-like genes during cold acclimation and drought stress in Arabidopsis thaliana. Plant Mol Biol 26:131-144.
44. Zhang YI, Sederoff R and Allona I (2000) Differential expression of gene encoding cell wall proteins in vascular tissues from vertical and bent loblolly pine trees. Tree Physiol 20:450-457.