Armored RNA as virus surrogate in a real-time reverse transcriptase PCR assay proficiency panel

Journal of Clinical Microbiology

Volumn 44, Issue 1, 2006, Pages 67-70

  Hietala, S K ^a,b   Crossley, B M ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ARTICLE; CONCENTRATION (PARAMETERS); ENVIRONMENTAL TEMPERATURE; EXTRACTION; FOOT AND MOUTH DISEASE VIRUS; GENE TARGETING; LABORATORY; NONHUMAN; PESTIVIRUS; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; REPRODUCIBILITY; REVERSE TRANSCRIPTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA ANALYSIS; ROOM TEMPERATURE; SEROTYPE; STORAGE; TEMPERATURE SENSITIVITY; TIME; VESICULAR STOMATITIS VIRUS; VIRUS DETECTION; VIRUS SPIKE;

LABORATORIES; QUALITY CONTROL; REFERENCE STANDARDS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SENSITIVITY AND SPECIFICITY;

ANIMALIA; CLASSICAL SWINE FEVER VIRUS; FOOT-AND-MOUTH DISEASE VIRUS; PESTIVIRUS; VESICULAR STOMATITIS VIRUS;

EID: 30744446773     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.44.1.67-70.2006     Document Type: Article

References (17)

1. Aarthi, D., K. Ananda Rao, R. Robinson, and V. A. Srinivasan. 2004. Validation of binary ethyleneimine (BEI) used as an inactivant for foot and mouth disease tissue culture vaccine. Biologicals 32:153-156.
2. Belak, S., and P. Thorén. 2004. Validation and quality control of polymerase chain reaction methods used for the diagnosis of infectious diseases. In G. A. Cullen and J. E. Pearson (coordinating ed.), Manual of diagnostic tests and vaccines for terrestrial animals. World Organization for Animal Health. [Online.] http://www.oie.int.
3. Birch, L., C. A. English, M. Burns, and J. T. Keer. 2004. Generic scheme for independent performance assessment in the molecular biology laboratory. Clin. Chem. 50:1553-1559.
4. Bressler, A. M., and F. S. Nolte. 2004. Preclinical evaluation of two real-time, reverse transcription-PCR assays for detection of severe acute respiratory syndrome coronavirus. J. Clin. Microbiol. 42:987-991.
5. Bustin, S. A., and T. Nolan. 2004. Pitfalls of quantitative real-time reverse-transcription polymerase chain reaction. J. Biomol. Tech. 15:155-166.
6. Callahan, J. D., F. Brown, F. A. Osorio, J. H. Sur, E. Kramer, G. W. Long, J. Lubroth, S. J. Ellis, K. S. Shoulars, K. L. Gaffney, D. L. Rock, and W. M. Nelson. 2002. Use of a portable real-time reverse transcriptase-polymerase chain reaction assay for rapid detection of foot-and-mouth disease virus. J. Am. Vet. Med. Assoc. 220:1636-1642.
7. Crossley, B. M., S. K. Hietala, L. M. Shin, L. Lee, E. W. Skowronski, and A. A. Ardans. 2005. High-throughput real-time RT-PCR assay to detect the exotic Newcastle disease virus during the California 2002-2003 outbreak. J. Vet. Diagn. Investig. 17:124-132.
8. Drosten, C., E. Seifried, and W. K. Roth. 2001. TaqMan 5′-nuclease human immunodeficiency virus type 1 PCR assay with phage-packaged competitive internal control for high-throughput blood donor screening. J. Clin. Microbiol. 39:4302-4308.
9. Fang, X., R. C. Willis, Q. Hoang, K. Kelnar, and W. Xu. 2004. High-throughput sample preparation for gene expression profiling and in vitro target validation. J. Assoc. Lab. Automation 9:140-145.
10. Pasloske, B. L., C. R. Walkerpeach, R. D. Obermoeller, M. Winkler, and D. B. DuBois. 1998. Armored RNA technology for production of ribonuclease- resistant viral RNA controls and standards. J. Clin. Microbiol. 36:3590-3594.
11. Paton, D. J., A. McGoldrick, E. Bensaude, S. Belak, C. Mittelholzer, F. Koenen, H. Vanderhallen, I. Greiser-Wilke, H. Scheibner, T. Stadejek, M. Hofmann, and B. Thuer. 2000. Classical swine fever virus: a second ring test to evaluate RT-PCR detection methods. Vet. Microbiol. 77:71-81.
12. Risatti, G., L. Holinka, Z. Lu, G. Kutish, J. D. Callahan, W. M. Nelson, E. Brea Tlo, and M. V. Borca. 2005. Diagnostic evaluation of a real-time reverse transcriptase PCR assay for detection of classical swine fever virus. J. Clin. Microbiol. 43:468-471.
13. Risatti, G. R., J. D. Callahan, W. M. Nelson, and M. V. Borca. 2003. Rapid detection of classical swine fever virus by a portable real-time reverse transcriptase PCR assay. J. Clin. Microbiol. 41:500-505.
14. Spackman, E., and D. L. Suarez. 2005. Use of a novel virus inactivation method for a multicenter avian influenza real-time reverse transcriptase- polymerase chain reaction proficiency study. J. Vet. Diagn. Investig. 17:76-80.
15. Van Vleit, K., P. Muir, J. M. Echevarria, P. E. Klapper, G. M. Cleator, and A. M. van Loon. 2001. Multicenter proficiency testing of nucleic amplification methods for detection of enteroviruses. J. Clin. Microbiol. 39:3390-3392.
16. Verkooyen, R. P., G. T. Noordhoek, P. E. Klapper, J. Reld, J. Schirm, G. M. Cleator, M. Ieven, and G. Hoddevik. 2003. Reliability of nucleic acid amplification methods for detection of Chlamydia trachomatis in urine: results of the first international collaborative quality control study among 96 laboratories. J. Clin. Microbiol. 41:3013-3016.
17. WalkerPeach, C. R., M. Winkler, D. B. DuBois, and B. L. Pasloske. 1999. Ribonuclease-resistant RNA controls (armored RNA) for reverse transcription-PCR, branched DNA, and genotyping assays for hepatitis C virus. Clin. Chem. 45:2079-2085.