Molecular detection of catabolic genes for polycyclic aromatic hydrocarbons in the reed rhizosphere of Sunchon Bay

Journal of Microbiology

Volumn 43, Issue 6, 2005, Pages 572-576

  Kahng, Hyung Yeel ^a   Oh, Kye Heon ^b  

^a Sunchon National University   (South Korea)

^b Soonchunhyang University   (South Korea)

Author keywords

Catabolic genes; PAH degradation; Reed rhizosphere; Sunchon Bay

Indexed keywords

BACTERIAL DNA; BACTERIAL PROTEIN; DIOXYGENASE; POLYCYCLIC AROMATIC HYDROCARBON;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENE; BACTERIUM; BIOREMEDIATION; CHEMICAL STRUCTURE; DNA SEQUENCE; GENETICS; KOREA; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY; PLANT ROOT; POACEAE; POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; BACTERIA; BACTERIAL PROTEINS; BIODEGRADATION, ENVIRONMENTAL; DIOXYGENASES; DNA, BACTERIAL; GENES, BACTERIAL; KOREA; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; PHYLOGENY; PLANT ROOTS; POACEAE; POLYCYCLIC HYDROCARBONS, AROMATIC; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; SOIL MICROBIOLOGY;

ACHROMOBACTER; ACHROMOBACTER SP.; ALCALIGENES; ALCALIGENES SP.; BACTERIA (MICROORGANISMS); BURKHOLDERIA; BURKHOLDERIA SP.; PSEUDOMONAS; PSEUDOMONAS SP.;

EID: 30744437477     PISSN: 12258873     EISSN: 12258873     Source Type: Journal    
DOI: None     Document Type: Article

References (30)

1. Batie, C.J., E. Lahaie, and D.P. Ballou. 1987. Purification and characterization of phthalate oxygenase and phthalate oxygenase reductase from Pseudomonas cepacia. J. Biol. Chem. 262, 1510-1518.
2. Begg, J.S., R.L. Lavigne, and P.L. Veneman. 2001. Reed beds: constructed wetlands for municipal wastewater treatment plant sludge dewatering. Water Sci. Technol. 44, 393-398.
3. Cerniglia, C.E., D.T. Gibson, and R.H. Dodge. 1994. Metabolism of benz[a]anthracene by the filamentous fungus Cumminghamella elegans. Appl. Environ. Microbiol. 60, 3931-3938.
4. Cigolini, J.F. 2000. Molecular analysis of polycyclic aromatic hydrocarbon degradation by Mycobacterium sp. strain PYO1. Ph. D thesis, Rutgers, The State University of New Jersey.
5. Cooper, P.F., J.A. Hobson, and S. Jowes. 1989. Sewage treatment by reed bed systems. J. Ins. Wat. Environ. Man. 3, 60-74.
6. Daane, L.L., I. Harjono, G.J. Zylstra, and M.M. Haggblom. 2001. Isolation and characterization of polycyclic aromatic hydrocarbon-degrading bacteria associated with the rhizosphere of salt marsh plants. Appl. Environ. Microbiol. 67, 2683-2691.
7. Farrell, R.E., C.M. Frick, and J.J. Germida. 2000. PhytoPet©: A database of plants that play a role in the phytoremediation of petroleum hydrocarbons. Proceedings of the Second Phytoremediation Technical Seminar, Environment Canada, Ottawa, ON. pp. 29-40.
8. Geary, P.J., F. Saboowalla, D.S. Patil, and R. Commack. 1984. An investigation of the iron-sulpur proteins of benzene dioxygenase from Pseudomonas putida by electron-spin-resonance spectroscopy. Biochem. J. 217, 667-673.
9. Gersberg, R.M., B.V. Elkins, S.R. Lyon, and C.R. Goldman. 1986. Role of aquatic plants in wastewater treatment by artificial wetlants. Water Res. 20, 363-368.
10. Gurbiel, R.J., C.J. Batie, M. Sivaraja, A.E. True, and J.A. Fee. 1989. Electron nuclear double resonance spectroscopy of N-15 enriched phthalate dioxygenase from Pseudomonas cepacia proves that 2 histidincs are coordinated to the [2Fe-2S] Riesketype clusters. Biochemistry 28, 4861-4871.
11. Han, M.-J., H.-T. Choi, and H.-G. Song. 2004. Degradation of phenanthrene by Trametes versicolor and its laccase. J. Microbiol. 42, 94-98.
12. Kahng, H.-Y., K. Nam, J.J. Kukor, B.-J. Yoon, D.-H. Lee, D.-C. Oh, S.-K. Kam, and K.-H. Oh. 2002. PAH utilization by Pseudomonas rhodesiae KK1 isolated from a former manufactured-gas plant site. Appl. Microbiol. Biotechnol. 30, 475-480.
13. Kern, J. and C. Idler. 1999. Treatment of domestic and agricultural wastewater by reed bed systems. Ecol. Eng. 12, 13-25.
14. Kim, S.-H., S.-M. Kang, K.-H. Oh, S.-I. Kim, B.-J. Yoon, and H.-Y. Kahng. 2005. Characterization of PAH-degrading bacteria from soils of the reed rhizosphere of Sunchon Bay using PAH consortia. Kor. J. Microbiol. 41, 208-215.
15. Laurie, A.D. and G. Lloyd-Jones. 1999. The phn genes of Burkholderia sp. Strain RP007 constitute a divergent gene cluster for polycyclic aromatic hydrocarbon catabolism. J. Bacteriol. 181, 531-540.
16. Lee, M.-S., S.-K Hong, D.-H. Lee, C.-K. Kim, and K.-S. Bae. 2001. Bacterial diversity in the mud flat of Sunchon Bay, Chunnam province, by 16S rRNA gene analysis. Kor. J. Microbiol. 37, 137-144.
17. Mason, J.R. 1988. Oxygenase catalyzed hydroxylation of aromatic compounds: simple chemistry by complex enzymes. Int Ind. Biotechnol. 46, 277-305.
18. Mason, J.R. and R. Commack. 1992. The electron transport proteins of hydroxylating bacterial dioxygenase. Annu. Rev. Microbiol. 46, 277-305.
19. Menn, F.M., B.M. Applegate, and G.S. Sayler. 1993. NAH plasmid-mediated catabolism of anthracene and phenanthrene to naphthoic acids. Appl. Environ. Microbiol. 59, 1938-1942.
20. Obarska-Pempkowiak, H. and K. Klimkowska. 1999. Distribution of nutrients and heavy metals in a constructed wetland system. Chemosphere 39, 303-312.
21. Reiske, J.S., R.E. Hanse, and W.S. Zaugg. 1964. Studies on the electron transfer system. LVIII. Properties of a new oxidation-reduction component of the respiratory chain as studied by electron paramagnetic resonance spectroscopy. J. Biol. Chem. 239, 3017-3021.
22. Saito, A., T. Iwabuchi, and S. Harayama. 2000. A novel phenanthrene dioxygenase from Nocardioides sp. strain KP7: expression in Escherichia coli. J. Bacteriol. 182, 2134-2141.
23. Sanseverino, J.B., B.M. Applegate, J.M.H. King, and G.S. Sayler. 1993. Plasmid-mediated ineralization of naphthalene, phenanthrene, and anthracene. Appl. Environ. Microbiol. 59, 1931-1937.
24. Simon, M.J., T.D. Osslund, R. Saunders, B.D. Ensley, S. Suggs, A. Harcourt, W. Suen, D. Cruden, D.T. Gibson, and G.J. Zylstra. 1993. Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strains G7 and NCIB 9816-4. Gene 127, 31-37.
25. Van Agteren, M.H., S. Keuning, and D.B. Janssen. 1998. Handbook on biodegradation and biological treatment of harzardous organic compounds. Kluwer Academic Publishers.
26. Wang, R.F., A.A. Khan, W.W. Cao, D.R. Doerge, D. Wennerstrom, and C.E. Cerniglia. 2001. Molecular cloning, nucleotide sequence, and expression of genes encoding a polycyclic aromatic ring dioxygenase from Mycobacterium sp. strain PYR-1. Appl. Environ. Microbiol. 67, 3577-3585.
27. Weissenfels W.D., M. Beyer, and J. Klein. 1990. Degradation of phenanthrene, fluorene, and fluoranthene by pure bacterial cultures. Appl. Microbiol. Biotechnol. 32, 479-484.
28. Yang, Y., R.F. Chen, and M.P. Shiaris. 1994. Metabolism of naphthalene, fluorene, and phenanthrene:preliminary characterization of a cloned gene cluster from Pseudomonas putida NCIB 9816. J. Bacteriol. 176, 2158-2164.
29. Yun, S.-H., C.-Y. Yun, and S.-I. Kim. 2004. Characterization of protocatechuate 4,5-dioxygenase induced from p-hydroxybenzoate-cultured Pseudomonas sp. K82. J. Microbiol. 42, 152-155.
30. Zylstra, G.J., X.P. Wang, E. Kim, and V.A. Didolkar. 1994. Cloning and analysis of the genes for polycyclic aromatic hydrocarbon degradation. Ann. NY Acad. Sci. 721, 386-398.