Construction of a bacterial artificial chromosome library containing large BamHI genomic fragments from Medicago truncatula and identification of clones linked to hypernodulating genes

Journal of Microbiology and Biotechnology

Volumn 16, Issue 2, 2006, Pages 256-263

  Park, So Yeon ^a   Nam, Young Woo ^a  

^a Sogang University   (South Korea)

Author keywords

BAC library; Hypernodulating genes; Map based cloning; Medicago truncatula; Molecular markers; PCR sreening

Indexed keywords

CHLOROPLAST DNA; MITOCHONDRIAL DNA; PLANT DNA;

ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; BARREL MEDIC; BIOTECHNOLOGY; CONTROLLED STUDY; DNA DETERMINATION; DNA SEQUENCE; GENE FREQUENCY; GENE ISOLATION; GENE LIBRARY; GENE MAPPING; GENOMIC FRAGMENT; HYBRIDIZATION; MOLECULAR CLONING; POLYMERASE CHAIN REACTION; PULSED FIELD GEL ELECTROPHORESIS; RANDOMIZATION; SEQUENCE ANALYSIS;

BACTERIA (MICROORGANISMS); MEDICAGO TRUNCATULA;

EID: 30444442152     PISSN: 10177825     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (40)

1. Albrecht, C., R. Geurts, and T. Bisseling. 1999. Legume nodulation and mycorrhizae formation; Two extremes in host specificity meet. EMBO J. 18: 281-288.
2. Ane, J.-M., G. B. Kiss, B. K. Riely, R. V. Penmetsa, G. E. D. Oldroyd, C. Ayax, J. Levy, F. Debelle, J.-M. Back, P. Kalo, C. Rosenberg, B. A. Roe, S. R. Long, J. Denarie, and D. R. Cook. 2004. Medicago truncatula DAM required for bacterial and fungal symbioses in legumes. Science 303: 1364-1367.
3. Baek, C.-H., D.-K. Park, K.-E. Lee, W. Hwang, I.-H. Kim, J. Maeng, and K.-S. Kim. 2004. Genes for the catabolism of deoxyfructosyl glutamine in pAtC58 are attributed to utilization of octopine in Agrobacterium tumefaciens strain NT1. J. Microbiol. Biotechnol. 14: 822-828.
4. Barker, D. G., S. Bianchi, F. Blondon, Y. Dattee, G. Duc, S. Essad, P. Flament, P. Gallusci, G. Genier, P. Guy, X. Muel, J. Tourneur, J. Denarie, and T. Huguet. 1990. Medicago truncatula, a model plant for studying the molecular genetics of the Sinorhizobium-legume symbiosis. Plant Mol. Biol. Rep. 8: 40-49.
5. Blondon, F., D. Marie, S. Brown, and A. Kondorosi. 1994. Genome size and base composition in Medicago sativa and M. truncatula species. Genome 37: 264-270.
6. Catoira, R., C. Galera, F. de Billy, E. P. Journet, F. Maillet, R. V. Penmetsa, C. Rosenberg, C. Gough, D. R. Cook, and J. Denarie. 2000. Identification of four genes of Medicago truncatula controlling steps in Nod factor transduction. Plant Cell 12: 1647-1666.
7. Chen, Q., S. Sun, Q. Ye, S. McCuine, E. Huff, and H.-B. Zhang. 2004. Construction of two BAC libraries from the wild Mexican diploid potato, Solanum pinnatisectum, and the identification of clones near the late blight and Colorado potato beetle resistance loci. Theor. Appl. Genet. 108: 1002-1009.
8. Choi, H.-K., D. Kim, T. Uhm, E. Limpens, H. Lim, J.-H. Mun, P. Kalo, R. V. Penmetsa, A. Seres, O. Kulikova, B. A. Roe, T. Bisseling, G. B. Kiss, and D. R. Cook. 2004. A sequence-based genetic map of Medicago truncatula and comparison of marker co-linearity with Medicago sativa. Genetics 166: 1463-1502.
9. Choi, H.-K., J.-H. Mun, D. Kim, H. Zhu, J.-M. Baek, J. Mudge, B. A. Roe, N. Ellis, J. Doyle, G. B. Kiss, N. D. Young, and D. R. Cook. 2005. Estimating genome conservation between crop and model legume species. Proc. Natl. Acad. Sci. USA 101: 15289-15294.
10. Choi, S., R. A. Creelman, J. E. Mullet, and R. A. Wing. 1995. Construction and characterization of a bacterial artificial chromosome library of Arabidopsis thaliana. Plant Mol. Biol. Rep. 13: 124-128.
11. Cullimore, J. and J. Denarie. 2003. How legumes select their sweet talking symbionts. Science 302: 575-578.
12. Dickstein, R., R. Prusty T. Peng, W. Ngo, and M. E. Smith. 1993. ENOD8, a novel early nodule-specific gene, is expressed in empty alfalfa nodules. Mol. Plant-Microbe Interact. 6: 715-721.
13. Endre, G., A. Kereszt, Z. Kevei, S. Mihacea, P. Kalo, and G. B. Kiss. 2002. A receptor kinase gene regulating symbiotic nodule development. Nature 417: 962-966.
14. Grill, E. and D. Somerville. 1991. Construction and characterization of a yeast artificial chromosome library of Arabidopsis which is suitable for chromosome walking. Mol. Gen. Genet. 226: 484-490.
15. Handberg, K. and J. Stougaard. 1992. Lotus japonicus, an autogamous, diploid legume species for classical and molecular genetics. Plant J. 2: 487-496.
16. Heo, M.-S., J.-H. Kim, S.-H. Park, G.-J. Woo, and H.-Y. Kim. 2004. Detection of genetically modified maize by multiplex PCR method. J. Microbiol. Biotechnol. 14: 1150-1156.
17. Kim, M.-K., H.-S. Kim, B.-O. Kim, S. Y. Yoo, J.-H. Seong, D.-K. Kim, S. E. Lee, S.-J. Choe, J.-C. Park, B.-M. Min, M.-J. Jeong, D. K. Kim, Y.-K. Shin, and J.-K. Kook. 2004. Multiplex PCR using conserved and species-specific 16S rDNA primers for simultaneous detection of Fusobacterium nucleatum and Actinobacillus actinomycetemcomitans. J. Microbiol. Biotechnol. 14: 110-115.
18. Lee, J.-S., S.-H. Kim, and Y.-H. Cho. 2004. Dithiothreitol attenuates the pathogenic interaction between Pseudomonas aeruginosa and Drosophila melanogaster. J. Microbiol. Biotechnol. 14: 367-372.
19. 2+ and calmodulin-dependent protein kinase required for bacterial and fungal symbioses. Science 303: 1361-1364.
20. Limpens, E., C. Franken, P. Smit, J. Willemse, T. Bisseling, and R. Geurts. 2003. LysM domain receptor kinase regulating rhizobial Nod factor-induced infection. Science 302: 630-633.
21. Mylona, P., K. Pawlowski, and T. Bisseling. 1995. Symbiotic nitrogen fixation. Plant Cell 7: 869-885.
22. Nam, Y.-W., R. V. Penmetsa, G. Endre, P. Uribe, D. Kim, and D. R. Cook. 1999. Construction of a bacterial artificial chromosome library of Medicago truncatula and identification of clones containing ethylene-response genes. Theor. Appl. Genet. 98: 638-646.
23. Nam, Y.-W., J.-R. Lee, K.-H. Song, M.-K. Lee, M. D. Robbins, S.-M. Chung, J. E. Staub, and H.-B. Zhang. 2005. Construction of two BAC libraries from cucumber (Cucumis sativus L.) and identification of clones linked to yield component quantitative trait loci. Theor. Appl. Genet. 111: 150-161.
24. Penmetsa, R. V. and D. R. Cook. 1997. A legume ethylene-insensitive mutant hyperinfected by its rhizobial symbiont. Science 275: 527-530.
25. Penmetsa, R. V., J. A. Frugoli, L. S. Smith, S. R. Long, and D. R. Cook. 2003. Dual genetic pathways controlling nodule number in Medicago truncatula. Plant Physiol. 131: 998-1008.
26. Sambrook, J. and D. W. Russell. 2001. Molecular Cloning: A Laboratory Manual, 3rd Ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, U.S.A.
27. Schauser, L., A. Roussis, J. Stiller, and J. Stougaard. 1999. A plant regulator controlling development of symbiotic root nodules. Nature 402: 191-195.
28. Schnabel, E., O. Kulikova, R. V. Penmetsa, T. Bisseling, D. R. Cook, and J. Frugoli. 2003. An integrated physical, genetic and cytogenetic map around the sunn locus of Medicago truncatula. Genome 46: 665-672.
29. Searle, I. R., A. E. Men, T. S. Laniya, D. M. Buzas, I. Iturbe-Ormaetxe, B. J. Carroll, and P. M. Gresshoff. 2003. Long-distance signaling in nodulation directed by a CLAVATA1-like receptor kinase. Science 299: 109-112.
30. Shizuya, H., B. Birren, U.-J. Kim, V. Mancino, T. Slepak, Y. Tachini, and M. Simon. 1992. Cloning and stable maintenance of 300 kilo base pair fragment of human DNA in Escherichia coli using an F-factor based vector. Proc. Natl. Acad. Sci. USA 89: 8794-8797.
31. Stracke, S., C. Kistner, S. Yoshida, L. Mulder, S. Sato, T. Kaneko, S. Tabata, N. Sandal, J. Stougaard, K. Szczyglowski, and M. Parniske. 2002. A plant receptor-like kinase required for both bacterial and fungal symbiosis. Nature 417: 959-962.
32. Tanksley, S. D., M. W. Ganal, and G. B. Martin. 1995. Chromosome landing: A paradigm for map-based gene cloning in plants with large genomes. Trends Genet. 11: 63-68.
33. Tao, Q., A. Wang, and H.-B. Zhang. 2002. One large-insert plant-transformation-competent BIBAC library and three BAC libraries of Japonica rice for genome research in rice and other grasses. Theor. Appl. Genet. 105: 1058-1066.
34. Trieu, A. T., S. H. Burleigh, I. V. Kardailsky, I. E. Maldonado-Mendoza, W. K. Versaw, L. A. Blaylock, H. Shin, T. J. Chiou, H. Katagi, G. R. Dewbre, D. Weigel, and M. J. Harrison. 2000. Transformation of Medicago truncatula via infiltration of seedlings or flowering plants with Agrobacterium. Plant J. 22: 531-541.
35. VandenBosch, K. A. and G. Stacey. 2003. Summaries of legume genomics projects from around the globe. Community resources for crops and models. Plant Physiol. 131: 840-865.
36. Woo, S.-S., J. Jiang, B. S. Grill, A. H. Paterson, and R. A. Wing. 1994. Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor. Nucleic Acids Res. 22: 4922-4931.
37. Wu, C., P. Nimmakayala, F. A. Santos, R. Springman, Q. Tao, K. Meksem, D. A. Lightfoot, and H.-B. Zhang. 2004. Construction and characterization of a soybean bacterial artificial chromosome library and use of multiple complementary libraries for genome physical mapping. Theor. Appl. Genet. 109: 1041-1050.
38. Zhang, H.-B., X. Zhao, X. Ding, A. H. Peterson, and R. A. Wing. 1995. Preparation of megabase-size DNA from plant nuclei. Plant J. 7: 175-184.
39. Zhang, H.-B., S.-S. Woo, and R. A. Wing. 1996. BAC, YAC and cosmid library construction, pp. 75-99. In Foster, G. and D. Twell (eds.), Plant Gene Isolation: Principles and Practices. John Wiley and Sons, England.
40. 0t-1 DNA from plants. Genome 40: 138-142.