Characterization of plasma membrane proteins from ovarian cancer cells using mass spectrometry

Disease Markers

Volumn 19, Issue 4-5, 2003, Pages 219-228

  Springer, David L ^a   Auberry, Deanna L ^a   Ahram, Mamoun ^a   Adkins, Joshua N ^a   Feldhaus, Jane M ^a   Wahl, Jon H ^a   Wunschel, David S ^a   Rodland, Karin D ^a  

^a PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

Author keywords

Glycosylation; Mass spectrometry; Ovarian cancer; Plasma membrane

Indexed keywords

3 [(3 CHOLAMIDOPROPYL)DIMETHYLAMMONIO] 1 PROPANESULFONIC ACID; BIOLOGICAL MARKER; BUFFER; CELL MEMBRANE PROTEIN; GLYCOSYLATED PROTEIN; LECTIN; LIGAND; PEPTIDE; PHOSPHATASE; PROTEINASE; PROTEOME; RECEPTOR; TRYPSIN;

AFFINITY CHROMATOGRAPHY; ARTICLE; CANCER CELL CULTURE; CELL GROWTH; CELL MEMBRANE; CONTROLLED STUDY; FEMALE; GLYCOSYLATION; HOMOGENATE; HUMAN; HUMAN CELL; MASS SPECTROMETER; MASS SPECTROMETRY; OVARY CANCER; OVARY CELL CULTURE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN STRUCTURE; PROTEIN TARGETING; PURIFICATION; REVERSED PHASE LIQUID CHROMATOGRAPHY; SEPARATION TECHNIQUE;

FALLOPIA;

EID: 3042794963     PISSN: 02780240     EISSN: None     Source Type: Journal    
DOI: 10.1155/2004/725617     Document Type: Article

References (28)

1. P.J. Adam, R. Boyd, K.L. Tyson, G.C. Fletcher, A. Stamps, L. Hudson, H.R. Poyser, N. Redpath, M. Griffiths, G. Steers, A.L. Harris, S. Patel, J. Berry, J.A. Loader, R.R. Townsend, L. Daviet, P. Legrain, R. Parekh and J.A. Terrett, Comprehensive proteomic analysis of breast cancer cell membranes reveals unique proteins with potential roles in clinical cancer, J Biol Chem 278 (2003), 6482-6489.
2. J.N. Adkins, S.M. Varnum, K.J. Auberry, R.J. Moore, N.H. Angell, R.D. Smith, D.L. Springer and J.G. Pounds, Toward a human blood serum proteome: analysis by multidimensional separation coupled with mass spectrometry, Mol Cell Proteomics 1 (2002), 947-955.
3. M. Chicurel, Cell biology. Cell migration research is on the move, Science 295 (2002), 606-609.
4. T.P. Conrads, G.A. Anderson, T.D. Veenstra, L. Pasa-Tolic and R.D. Smith, Utility of accurate mass tags for proteome-wide protein identification, Anal Chem 72 (2000), 3349-3354.
5. J. Fogh, J.M. Fogh and T. Orfeo, One hundred and twenty-seven cultured human tumor cell lines producing tumors in nude mice, J Natl Cancer Inst 59 (1977), 221-226.
6. H.H. Gallion and R.C.J. Bast, National Cancer Institute conference on investigational strategies for detection and intervention in early ovarian cancer, Cancer Research 53 (1993), 3839-3842.
7. S.P. Gygi, G.L. Corthals, Y. Zhang, Y. Rochon and R. Aebersold, Evaluation of two-dimensional gel elecvtrophoresis-based proteome analysis technology, Proc Natl Acad Sci USA 97 (2000), 9390-9395.
8. H.J. Issaq, T.P. Conrads, G.M. Janini and T.D. Veenstra, Methods for fractionation, separation and profiling of proteins and peptides, Electrophoresis 23 (2002), 3048-3061.
9. G.M. Janini, T.P. Conrads, T.D. Veenstra and H.J. Issaq, Development of a two-dimensional protein-peptide separation protocol for comprehensive proteome measurements, J Chromatogr B Analyt Technol Biomed Life Sci 787 (2003), 43-51.
10. N. Jessani, Y. Liu, M. Humphrey and B.F. Cravatt, Enzyme activity profiles of the secreted and membrane proteome that depict cancer cell invasiveness, Proc Natl Acad Sci USA 99 (2002), 10335-10340.
11. A.J. Link, J. Eng, D.M. Schieltz, E. Carmack, G.J. Mize, D.R. Morris, B.M. Garvik and J.R. Yates, 3rd, Direct analysis of protein complexes using mass spectrometry, Nat Biotechnol 17 (1999), 676-682.
12. H. Lis and N. Sharon, Lectins as molecules and tools, Ann Rev Biochem 55 (1986), 35-67.
13. K. Ono, T. Tanaka, T. Tsunoda, O. Kitahara, C. Kihara, A. Okamoto, K. Ochiai, T. Takagi and Y. Nakamura, Identification by cDNA microarray of genes involved in ovarian carcinogenesis, Cancer Res 60 (2000), 5007-5011.
14. M.S. Piver, T.R. Baker, M. Piedmonte and A.M. Sandecki, Epidemiology and etiology of ovarian cancer, Sem. Oncol. 18 (1991), 177-185.
15. D. Rabinerson, B. Kaplan, H. Levavi and A. Neri, The biology of ovarian cancer of epithelial origin, Isr J Med Sci 32 (1996), 1128-1133.
16. V. Santoni, S. Kieffer, D. Desclaux, F. Masson and T. Rabilloud, Membrane proteomics: use of additive main effects with multiplicative interaction model to classify plasma membrane proteins according to their solubility and electrophoretic properties, Electrophoresis 21 (2000), 3329-3344.
17. M. Schummer, W.V. Ng, R.E. Bumgarner, P.S. Nelson, B. Schummer, D.W. Bednarski, L. Hassell, R.L. Baldwin, B.Y. Karlan and L. Hood, Comparative hybridization of an array of 21 500 ovarian cDNAs for the discovery of genes overexptessed in ovarian carcinomas, Gene 238 (1999), 375-385.
18. B.K. Shin, H. Wang, A.M. Yim, F. Le Naour, F. Brichory, J.H. Jang, R. Zhao, E. Puravs, J. Tra, C.W. Michael, D.E. Misek and S.M. Hanash, Global profiling of the cell surface proteome of cancer cells uncovers an abundance of proteins with chaperone function, J Biol Chem 278 (2003), 7607-7616.
19. R.D. Smith, G.A. Anderson, M.S. Lipton, L. Pasa-Tolic, Y. Shen, T.P. Conrads, T.D. Veenstra and H.R. Udseth, An accurate mass tag strategy for quantitative and high-throughput proteome measurements, Proteomics 2 (2002), 513-523.
20. R.D. Smith, L. Pasa-Tolic, M.S. Lipton, P.K. Jensen, G.A. Anderson, Y. Shen, T.P. Conrads, H.R. Udseth, R. Harkewicz, M.E. Belov, C. Masselon and T.D. Veenstra, Rapid quantitative measurements of proteomes by Fourier transform ion cyclotron resonance mass spectrometry, Electrophoresis 22 (2001), 1652-1668.
21. H. Wang, M.T. Kachman, D.R. Schwartz, K.R. Cho and D.M. Lubman, A protein molecular weight map of ES2 clear cell ovarian carcinoma cells using a two-dimensional liquid separations/mass mapping technique, Electrophoresis 23 (2002), 3168-3181.
22. M.P. Washburn, D. Wolters and J.R. Yates, 3rd, Large-scale analysis of the yeast proteome by multidimensional protein identification technology, Nat Biotechnol 19 (2001), 242-247.
23. H. Watarai, Y. Inagaki, N. Kubota, K. Fuju, J. Nagafune, Y. Yamaguchi and T. Kadoya, Proteomic approach to the identification of cell membrane proteins, Electrophoresis 21 (2000), 460-464.
24. A. Wells, Tumor invasion: role of growth factor-induced cell motility, Adv Cancer Res 78 (2000), 31-101.
25. D.A. Wolters, M.P. Washburn and J.R. Yates, 3rd, An automated multidimensional protein identification technology for shotgun proteomics, Anal Chem 73 (2001), 5683-5690.
26. K.K. Wong, R.S. Cheng and S.C. Mok, Identification of differentially expressed genes from ovarian cancer cells by MICROMAX cDNA microarray system, Biotechniques 30 (2001), 670-675.
27. J.R. Yates, 3rd, A.L. McCormack and J.K. Eng, Analytical and Chemistry News & Features (1996), 534-540.
28. J.R. Yates, 3rd, E. Carmack, L. Hays, A.J. Link and J.K. Eng, Automated protein identification using microcolumn liquid chromatography-tandem mass spectrometry, Methods Mol Biol (1999), 553-569.