Molecular characterization of PL97-1, the first Korean isolate of the porcine reproductive and respiratory syndrome virus

Virus Research

Volumn 104, Issue 2, 2004, Pages 165-179

  Kang, Shien Young ^a   Yun, Sang Im ^b   Park, Hyo Sun ^a   Park, Choi Kyu ^c   Choi, Hyo Seong ^d   Lee, Young Min ^b  

^a Chungbuk National University   (South Korea)

^b Chungbuk National University College of Medicine   (South Korea)

^c Animal Plant and Fisheries Quarantine and Inspection Agency   (South Korea)

^d National Cancer Center   (South Korea)

Author keywords

Complete genome sequence; Phylogeny; PL97 1; PRRSV

Indexed keywords

AMINO ACID; GENOMIC RNA; NUCLEOTIDE; VIRUS VACCINE;

AMINO ACID SEQUENCE; ANIMAL CELL; ARTERIVIRUS; ARTICLE; GENE SEQUENCE; GENETIC CODE; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; MOLECULAR PHYLOGENY; NONHUMAN; NORTH AMERICA; NUCLEOTIDE SEQUENCE; PHYLOGENY; PREDICTION; PRIORITY JOURNAL; SERUM; SWINE; VIRUS CHARACTERIZATION; VIRUS GENOME; VIRUS INFECTION; VIRUS ISOLATION; VIRUS STRAIN;

AMINO ACID SEQUENCE; GENOME, VIRAL; KOREA; MOLECULAR SEQUENCE DATA; PHYLOGENY; PORCINE REPRODUCTIVE AND RESPIRATORY SYNDROME; PORCINE RESPIRATORY AND REPRODUCTIVE SYNDROME VIRUS; RNA, VIRAL;

PORCINE REPRODUCTIVE AND RESPIRATORY SYNDROME VIRUS; SUIDAE; SUS SCROFA;

EID: 3042790003     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virusres.2004.04.003     Document Type: Article

References (65)

1. Allende R., Lewis T.L., Lu Z., Rock D.L., Kutish G.F., Ali A., Doster A.R., Osorio F.A. North American and European porcine reproductive and respiratory syndrome viruses differ in non-structural protein coding regions. J. Gen. Virol. 80:1999;307-315
2. Allende R., Laegreid W.W., Kutish G.F., Galeota J.A., Wills R.W., Osorio F.A. Porcine reproductive and respiratory syndrome virus: description of persistence in individual pigs upon experimental infection. J. Virol. 74:2000;10834-10837
3. Andreyev V.G., Wesley R.D., Mengeling W.L., Vorwald A.C., Lager K.M. Genetic variation and phylogenetic relationships of 22 porcine reproductive and respiratory syndrome virus (PRRSV) field strains based on sequence analysis of open reading frame 5. Arch. Virol. 142:1997;993-1001
4. Benfield D.A., Nelson E., Collins J.E., Harris L., Goyal S.M., Robison D., Christianson W.T., Morrison R.B., Gorcyca D., Chladek D. Characterization of swine infertility and respiratory syndrome (SIRS) virus (isolate ATCC VR-2332). J. Vet. Diagn. Invest. 4:1992;127-133
5. Botner A., Strandbygaard B., Sorensen K.J., Have P., Madsen K.G., Madsen E.S., Alexandersen S. Appearance of acute PRRS-like symptoms in sow herds after vaccination with a modified live PRRS vaccine. Vet. Rec. 141:1997;497-499
6. Cavanagh D. Nidovirales: a new order comprising Coronaviridae and Arteriviridae. Arch. Virol. 142:1997;629-633
7. Chueh L.L., Lee K.H., Wang F.I., Pang V.F., Weng C.N. Sequence analysis of the nucleocapsid protein gene of the porcine reproductive and respiratory syndrome virus Taiwan MD-001 strain. Adv. Exp. Med. Biol. 440:1998;795-799
8. Collins J.E., Benfield D.A., Christianson W.T., Harris L., Hennings J.C., Shaw D.P., Goyal S.M., McCullough S., Morrison R.B., Joo H.S., Gorcyca D.E., Chladek D.W. Isolation of swine infertility and respiratory syndrome virus (isolate ATCC VR-2332) in North America and experimental reproduction of the disease in gnotobiotic pigs. J. Vet. Diagn. Invest. 4:1992;117-126
9. Dea S., Gagnon C.A., Mardassi H., Pirzadeh B., Rogan D. Current knowledge on the structural proteins of porcine reproductive and respiratory syndrome (PRRS) virus: comparison of the North American and European isolates. Arch. Virol. 145:2000;659-688
10. Drew T.W., Lowings J.P., Yapp F. Variation in open reading frames 3, 4, and 7 among porcine reproductive and respiratory syndrome virus isolates in the UK. Vet. Microbiol. 55:1997;209-221
11. Drew T.W., Meulenberg J.J.M., Sands J.J., Paton D.J. Production, characterization and reactivity of monoclonal antibodies to porcine reproductive and respiratory syndrome virus. J. Gen. Virol. 76:1995;1361-1369
12. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 39:1985;783-791
13. Forsberg R., Storgaard T., Nielsen H.S., Oleksiewicz M.B., Cordioli P., Sala G., Hein J., Botner A. The genetic diversity of European type PRRSV is similar to that of the North American type but is geographically skewed within Europe. Virology. 299:2002;38-47
14. Gagnon C.A., Dea S. Differentiation between porcine reproductive and respiratory syndrome virus isolates by restriction fragment length polymorphism of their ORFs 6 and 7 genes. Can. J. Vet. Res. 62:1998;110-116
15. Goldberg T.L., Hahn E.C., Weigel R.M., Scherba G. Genetic, geographical and temporal variation of porcine reproductive and respiratory syndrome virus in Illinois. J. Gen. Virol. 81:2000;171-179
16. Indik S., Valicek L., Klein D., Klanova J. Variations in the major envelope glycoprotein GP5 of Czech strains of porcine reproductive and respiratory syndrome virus. J. Gen. Virol. 81:2000;2497-2502
17. Kapur V., Elam M.R., Pawlovich T.M., Murtaugh M.P. Genetic variation in porcine reproductive and respiratory syndrome virus isolates in the midwestern United States. J. Gen. Virol. 77:1996;1271-1276
18. Katz J.B., Shafer A.L., Eernisse K.A., Landgraf J.G., Nelson E.A. Antigenic differences between European and American isolates of porcine reproductive and respiratory syndrome virus (PRRSV) are encoded by the carboxylterminal portion of viral open reading frame 3. Vet. Microbiol. 44:1995;65-76
19. Keffaber K.K. Reproductive failure of unknown etiology. Am. Assoc. Swine Pract. Newslett. 1:1989;1-9
20. Key K.F., Haqshenas G., Guenette D.K., Swenson S.L., Toth T.E., Meng X.J. Genetic variation and phylogenetic analyses of the ORF5 gene of acute porcine reproductive and respiratory syndrome virus isolates. Vet. Microbiol. 83:2001;249-263
21. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:1980;111-120
22. Kwang J., Kim H.S., Joo H.S. Cloning, expression, and sequence analysis of the ORF4 gene of the porcine reproductive and respiratory syndrome virus MN-1b. J. Vet. Diagn. Invest. 6:1994;293-296
23. Le Gall A., Legeay O., Bourhy H., Arnauld C., Albina E., Jestin A. Molecular variation in the nucleoprotein gene (ORF7) of the porcine reproductive and respiratory syndrome virus (PRRSV). Virus Res. 54:1998;9-21
24. Madsen K.G., Hansen C.M., Madsen E.S., Strandbygaard B., Botner A., Sorensen K.J. Sequence analysis of porcine reproductive and respiratory syndrome virus of the American type collected from Danish swine herds. Arch. Virol. 143:1998;1683-1700
25. Mardassi H., Mounir S., Dea S. Identification of major differences in the nucleocapsid protein genes of a Quebec strain and European strains of porcine reproductive and respiratory syndrome virus. J. Gen. Virol. 75:1994;681-685
26. Mardassi H., Mounir S., Dea S. Molecular analysis of the ORFs 3-7 of porcine reproductive and respiratory syndrome virus, Quebec reference strain. Arch. Virol. 140:1995;1405-1418
27. Mateu E., Martin M., Vidal D. Genetic diversity and phylogenetic analysis of glycoprotein 5 of European-type porcine reproductive and respiratory virus strains in Spain. J. Gen. Virol. 84:2003;529-534
28. Medveczky I., Balint A., Makranszky L., Steverink P., Jacobs L. Sequence analysis of the membrane protein gene and nucleocapsid gene of porcine reproductive and respiratory syndrome virus isolated from a swine herd in Hungary. Acta Vet. Hung. 49:2001;237-244
29. Meng X.J. Heterogeneity of porcine reproductive and respiratory syndrome virus: implications for current vaccine efficacy and future vaccine development. Vet. Microbiol. 74:2000;309-329
30. Meng X.J., Paul P.S., Halbur P.G. Molecular cloning and nucleotide sequencing of the 3′-terminal genomic RNA of the porcine reproductive and respiratory syndrome virus. J. Gen. Virol. 75:1994;1795-1801
31. Meng X.J., Paul P.S., Halbur P.G., Lum M.A. Phylogenetic analyses of the putative M (ORF 6) and N (ORF 7) genes of porcine reproductive and respiratory syndrome virus (PRRSV): implication for the existence of two genotypes of PRRSV in the USA and Europe. Arch. Virol. 140:1995a;745-755
32. Meng X.J., Paul P.S., Halbur P.G., Morozov I. Sequence comparison of open reading frames 2-5 of low and high virulence United States isolates of porcine reproductive and respiratory syndrome virus. J. Gen. Virol. 76:1995b;3181-3188
33. Mengeling W.L., Vorwald A.C., Lager K.M., Clouster D.F., Wesley R.D. Identification and clinical assessment of suspected vaccine-related field strains of porcine reproductive and respiratory syndrome virus. Am. J. Vet. Res. 60:1999;334-340
34. Meulenberg J.J.M., den Besten A.P., de Kluyver E.P., van Nieuwstadt A., Wensvoort G., Moormann R.J.M. Molecular characterization of Lelystad virus. Vet. Microbiol. 55:1997;197-202
35. Meulenberg J.J.M., Hulst M.M., de Meijer E.J., Moonen P.L.J.M., den Besten A., de Kluyver E.P., Wensvoort G., Moormann R.J.M. Lelystad virus, the causative agent of porcine epidemic abortion and respiratory syndrome (PEARS), is related to LDV and EAV. Virology. 192:1993;62-72
36. Morozov I., Meng X.J., Paul P.S. Sequence analysis of open reading frames (ORFs) 2-4 of a US isolate of porcine reproductive and respiratory syndrome virus. Arch. Virol. 140:1995;1313-1319
37. Murtaugh M.P., Elam M.R., Kakach L.T. Comparison of the structural protein coding sequences of the VR-2332 and Lelystad virus strains of the PRRS virus. Arch. Virol. 140:1995;1451-1460
38. Nelsen C.J., Murtaugh M.P., Faaberg K.S. Porcine reproductive and respiratory syndrome virus comparison: divergent evolution on two continents. J. Virol. 73:1999;270-280
39. Nielsen, J., Botner, A., Oleksiewicz, M., Storgaard, T., 1998. Experimental inoculation of late-term pregnant sows with a field isolate of PRRS vaccine-like virus. In: Done, S., Thomson, J., Varley, M. (Eds.), Proceedings of the 15th International Pig Veterinary Society Congress, vol. 2, Nottingham University Press, Nottingham, pp. 127.
40. Nielsen H.S, Oleksiewicz M.B., Forsberg R., Stadejek T., Botner A., Storgaard T. Reversion of a live porcine reproductive and respiratory syndrome virus vaccine investigated by parallel mutations. J. Gen. Virol. 82:2001;1263-1272
41. Oleksiewicz M.B., Botner A., Nielsen J., Storgaard T. Determination of 5′-leader sequences from radically disparate strains of porcine reproductive and respiratory syndrome virus reveals the presence of highly conserved sequence motifs. Arch. Virol. 144:1999;981-987
42. Oleksiewicz M.B., Botner A., Toft P., Grubbe T., Nielsen J., Kamstrup S., Storgaard T. Emergence of porcine reproductive and respiratory syndrome virus deletion mutants: correlation with the porcine antibody response to a hypervariable site in the ORF 3 structural glycoprotein. Virology. 267:2000;135-140
43. Page R.D.M. Treeview: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12:1996;357-358
44. Paton D.J., Brown I.H., Edwards S., Wensvoort G. 'Blue ear' disease of pigs. Vet. Rec. 128:1991;617
45. Pirzadeh B., Gagnon C.A., Dea S. Genomic and antigenic variations of porcine reproductive and respiratory syndrome virus major envelope GP5 glycoprotein. Can. J. Vet. Res. 62:1998;170-177
46. Saitou N., Nei M. The Neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:1987;406-425
47. Shen S., Kwang J., Liu W., Liu D.X. Determination of the complete nucleotide sequence of a vaccine strain of porcine reproductive and respiratory syndrome virus and identification of the Nsp2 gene with a unique insertion. Arch. Virol. 145:2000;871-883
48. Snijder E.J., Meulenberg J.J.M. The molecular biology of arteriviruses. J. Gen. Virol. 79:1998;961-979
49. Snijder, E.J., Meulenberg, J.J.M., 2001. Arteriviruses. In: Knipe, D.M., Howley, P.M. (Eds.), Fields Virology, fourth ed., vol. 1. Lippincott Williams and Wilkins, PA, pp. 1205-1220.
50. Solomon T., Ni H., Beasley D.W.C., Ekkelenkamp M., Cardosa M.J., Barrett A.D.T. Origin and evolution of Japanese encephalitis virus in Southeast Asia. J. Virol. 77:2003;3091-3098
51. Sorensen K.J., Strandbygaard B., Botner A., Madsen E.S., Nielsen J., Have P. Blocking ELISA's for the distinction between antibodies against European and American strains of porcine reproductive and respiratory syndrome virus. Vet. Microbiol. 60:1998;169-177
52. Stadejek T., Stankevicius A., Storgaard T., Oleksiewicz M.B., Belak S., Drew T.W., Pejsak Z. Identification of radically different variants of porcine reproductive and respiratory syndrome virus in Eastern Europe: towards a common ancestor for European and American viruses. J. Gen. Virol. 83:2002;1861-1873
53. Storgaard T., Oleksiewicz M., Botner A. Examination of the selective pressures on a live PRRS vaccine virus. Arch. Virol. 144:1999;2389-2401
54. Suarez P., Zardoya R., Martin M.J., Prieto C., Dopazo J., Solana A., Castro J.M. Phylogenetic relationships of European strains of porcine reproductive and respiratory syndrome virus (PRRSV) inferred from DNA sequences of putative ORF-5 and ORF-7 genes. Virus Res. 42:1996;159-165
55. Tan C., Chang L., Shen S., Liu D.X., Kwang J. Comparison of the 5′ leader sequences of North American isolates of reference and field strains of porcine reproductive and respiratory syndrome virus (PRRSV). Virus Genes. 22:2001;209-217
56. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality tools. Nucleic Acids Res. 25:1997;4876-4882
57. Verheije M.H., Kroese M.V., Rottier P.J., Meulenberg J.J. Viable porcine arteriviruses with deletions proximal to the 3′-end of the genome. J. Gen. Virol. 82:2001;2607-2614
58. Wensvoort G., Terpstra C., Pol J.M., ter Laak E.A., Bloemraad M., de Kluyver E.P., Kragten C., van Buiten L., den Besten A., Wagenaar F., Broekhuijsen J.M., Moonen P.L.J.M., Zetstra T., de Boer E.A., Tibben H.J., de Jong M.F., van't Veld P., Groenland G.J.R., van Gennep J.A., Voets M.T., Verheijden J.H.M., Braamskamp J. Mystery swine disease in the Netherlands: the isolation of Lelystad virus. Vet. Q. 13:1991;121-130
59. Wesley R.D., Mengeling W.L., Lager K.M., Clouser D.F., Landgraf J.G., Frey M.L. Differentiation of a porcine reproductive and respiratory syndrome virus vaccine strain from North American field strains by restriction fragment length polymorphism analysis of ORF5. J. Vet. Diagn. Invest. 10:1998;140-144
60. Wesley R.D., Mengeling W.L., Lager K.M., Vorwald A.C., Roof M.B. Evidence for divergence of restriction fragment length polymorphism patterns following in vivo replication of porcine reproductive and respiratory syndrome virus. Am. J. Vet. Res. 60:1999;463-467
61. Westrop G.D., Wareham K.A., Evans D.M., Dunn G., Minor P.D., Magrath D.I., Taffs F., Marsden S., Skinner M.A., Schild G.C., Almond J.W. Genetic basis of attenuation of the Sabin type 3 oral poliovirus vaccine. J. Virol. 63:1989;1338-1344
62. Williams G.D., Chang R.Y., Brian D.A. A phylogenetically conserved hairpin-type 3′ untranslated region pseudoknot functions in coronavirus RNA replication. J. Virol. 73:1999;8349-8355
63. Wootton S., Yoo D., Rogan D. Full-length sequence of a Canadian porcine reproductive and respiratory syndrome virus (PRRSV) isolate. Arch. Virol. 145:2000;2297-2323
64. Yuan S., Mickelson D., Murtaugh M.P., Faarberg K.S. Complete genome comparison of porcine reproductive and respiratory syndrome virus parental and attenuated strains. Virus Res. 79:2001;189-200
65. Yun S.-I., Kim S.-Y., Rice C.M., Lee Y.-M. Development and application of a reverse genetics system for Japanese encephalitis virus. J. Virol. 77:2003;6450-6465