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Volumn 59, Issue 1, 2004, Pages 103-113

Cyanobacterial genes transmitted to the nucleus before divergence of red algae in the Chromista

Author keywords

Chromista; Cyanobacterial nuclear genes; Phylogeny; Plastids; Primary endosymbiosis; Secondary endosymbiosis

Indexed keywords

ARTICLE; BACTERIAL GENE; CELL NUCLEUS; CONTROLLED STUDY; CYANOBACTERIUM; ENDOSYMBIOSIS; EUKARYOTE; GENE SEQUENCE; GENOME; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLASTID; PROKARYOTE; RED ALGA;

EID: 3042769418     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-003-2611-1     Document Type: Article
Times cited : (16)

References (41)
  • 2
    • 0038714278 scopus 로고    scopus 로고
    • Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans
    • Archibald JM, Rogers MB, Toop M, Ishida K, Keeling PJ (2003) Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans. Proc Natl Acad Sci USA 100:7678-7683
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 7678-7683
    • Archibald, J.M.1    Rogers, M.B.2    Toop, M.3    Ishida, K.4    Keeling, P.J.5
  • 3
    • 0037154011 scopus 로고    scopus 로고
    • A cyanobacterial gene in non-photosynthetic protests - An early chloroplast acquisition in Eukaryotes?
    • Andersson JO, Roger AJ (2002) A cyanobacterial gene in non-photosynthetic protests - An early chloroplast acquisition in Eukaryotes? Curr Biol 12:115-119
    • (2002) Curr Biol , vol.12 , pp. 115-119
    • Andersson, J.O.1    Roger, A.J.2
  • 4
    • 0030667683 scopus 로고    scopus 로고
    • Origin and evolution of the slime molds (Mycetozoa)
    • Baldauf SL, Doolittle WF (1997) Origin and evolution of the slime molds (Mycetozoa). Proc Natl Acad Sci USA 94:12007-12012
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 12007-12012
    • Baldauf, S.L.1    Doolittle, W.F.2
  • 6
    • 0001674430 scopus 로고
    • The phylogeny of plastids: A review based on comparisons of small subunit ribosomal RNA coding regions
    • Bhattacharya D, Medlin L (1995) The phylogeny of plastids: A review based on comparisons of small subunit ribosomal RNA coding regions. J Phycol 31:489-498
    • (1995) J Phycol , vol.31 , pp. 489-498
    • Bhattacharya, D.1    Medlin, L.2
  • 7
    • 0037154314 scopus 로고    scopus 로고
    • Chloroplast evolution: Secondary symbiogenesis and multiple losses
    • Cavalier-Smith T (2002) Chloroplast evolution: Secondary symbiogenesis and multiple losses. Curr Biol 12:R62-R64
    • (2002) Curr Biol , vol.12
    • Cavalier-Smith, T.1
  • 8
    • 0037471677 scopus 로고    scopus 로고
    • Genomic reduction and evolution of novel genetic membranes and protein-targeting machinery in eukaryote-eukaryote chimaeras (meta-algae)
    • Cavalier-Smith T (2003) Genomic reduction and evolution of novel genetic membranes and protein-targeting machinery in eukaryote-eukaryote chimaeras (meta-algae). Phil Trans R Soc Lond B Biol Sci 358:109-133
    • (2003) Phil Trans R Soc Lond B Biol Sci , vol.358 , pp. 109-133
    • Cavalier-Smith, T.1
  • 9
    • 0032727696 scopus 로고    scopus 로고
    • Tracing the thread of plastid diversity through the tapestry of life
    • Delwiche CF (1999) Tracing the thread of plastid diversity through the tapestry of life. Am Nat 154:164-177
    • (1999) Am Nat , vol.154 , pp. 164-177
    • Delwiche, C.F.1
  • 10
    • 0035103466 scopus 로고    scopus 로고
    • Nuclear-encoded, plastid-targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids
    • Fast NM, Kissinger JC, Roos DS, Keeling PJ (2001) Nuclear-encoded, plastid-targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids. Mol Biol Evol 18:418-426
    • (2001) Mol Biol Evol , vol.18 , pp. 418-426
    • Fast, N.M.1    Kissinger, J.C.2    Roos, D.S.3    Keeling, P.J.4
  • 11
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using bootstrap
    • Felsenstein J (1985) Confidence limits on phylogenies: an approach using bootstrap. Evolution 38:16-24
    • (1985) Evolution , vol.38 , pp. 16-24
    • Felsenstein, J.1
  • 12
    • 0003437299 scopus 로고    scopus 로고
    • Distributed by the author, Department of Genome Sciences, University of Washington, Seattle
    • Felsenstein J (2002) PHYLIP (Phylogeny Inference Package) version 3.6a3. Distributed by the author, Department of Genome Sciences, University of Washington, Seattle
    • (2002) PHYLIP (Phylogeny Inference Package) Version 3.6a3
    • Felsenstein, J.1
  • 13
    • 0344440735 scopus 로고    scopus 로고
    • Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids
    • Harper JT, Keeling PJ (2003) Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids. Mol Biol Evol 20:1730-1735
    • (2003) Mol Biol Evol , vol.20 , pp. 1730-1735
    • Harper, J.T.1    Keeling, P.J.2
  • 14
    • 0027466539 scopus 로고
    • Early branchings in the evolution of eukaryotes: Ancient divergence of Entamoeba that lacks mitochondria revealed by protein sequence data
    • Hasegawa M, Hashimoto T, Adachi J, Iwabe N, Miyata T (1993) Early branchings in the evolution of eukaryotes: Ancient divergence of Entamoeba that lacks mitochondria revealed by protein sequence data. J Mol Evol 36:380-388
    • (1993) J Mol Evol , vol.36 , pp. 380-388
    • Hasegawa, M.1    Hashimoto, T.2    Adachi, J.3    Iwabe, N.4    Miyata, T.5
  • 15
    • 0037047078 scopus 로고    scopus 로고
    • Second- and third-hand chloroplasts in dinoflagellates: Phylogeny of oxygen-evolving enhancer 1 (PsbO) protein reveals replacement of a nuclear-encoded plastid gene by that of a haptophyte tertiary endosymbiont
    • Ishida K, Green BR (2002) Second- and third-hand chloroplasts in dinoflagellates: phylogeny of oxygen-evolving enhancer 1 (PsbO) protein reveals replacement of a nuclear-encoded plastid gene by that of a haptophyte tertiary endosymbiont. Proc Natl Acad Sci USA 99:9294-9299
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 9294-9299
    • Ishida, K.1    Green, B.R.2
  • 16
    • 0036791017 scopus 로고    scopus 로고
    • Acceleration of genomic evolution caused by enhanced mutation rate in endocellular symbionts
    • Itoh T, Martin W, Nei M (2002) Acceleration of genomic evolution caused by enhanced mutation rate in endocellular symbionts. Proc Natl Acad Sci USA 99:12944-12948
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 12944-12948
    • Itoh, T.1    Martin, W.2    Nei, M.3
  • 17
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • Jones DT, Taylor WR, Thornton JM (1992) The rapid generation of mutation data matrices from protein sequences. CABIOS 8:275-282
    • (1992) CABIOS , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 19
    • 0024307824 scopus 로고
    • Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
    • Kishino H, Hasegawa M (1989) Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J Mol Evol 29:170-179
    • (1989) J Mol Evol , vol.29 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 20
    • 0025181359 scopus 로고
    • Maximum likelihood inference of protein phylogeny, and the origin of chloroplasts
    • Kishino H, Miyata T, Hasegawa M (1990) Maximum likelihood inference of protein phylogeny, and the origin of chloroplasts. J Mol Evol 31:151-160
    • (1990) J Mol Evol , vol.31 , pp. 151-160
    • Kishino, H.1    Miyata, T.2    Hasegawa, M.3
  • 21
    • 0037126071 scopus 로고    scopus 로고
    • Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
    • Martin W, Rujan T, Richly E, Hansen A, Cornelsen S, Lins T, Leister D, Stoebe B, Hasegawa M, Penny D (2002) Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc Natl Acad Sci USA 99:12246-12251
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 12246-12251
    • Martin, W.1    Rujan, T.2    Richly, E.3    Hansen, A.4    Cornelsen, S.5    Lins, T.6    Leister, D.7    Stoebe, B.8    Hasegawa, M.9    Penny, D.10
  • 23
    • 0035689472 scopus 로고    scopus 로고
    • Primary and secondary endosymbiosis and the origin of plastids
    • McFadden GI (2001) Primary and secondary endosymbiosis and the origin of plastids. J Phycol 37:951-959
    • (2001) J Phycol , vol.37 , pp. 951-959
    • McFadden, G.I.1
  • 24
    • 0034604170 scopus 로고    scopus 로고
    • The origin of red algae and the evolution of chloroplasts
    • Moreira D, Le Guyader H, Philippe H (2000) The origin of red algae and the evolution of chloroplasts. Nature 405:69-72
    • (2000) Nature , vol.405 , pp. 69-72
    • Moreira, D.1    Le Guyader, H.2    Philippe, H.3
  • 25
    • 0034733187 scopus 로고    scopus 로고
    • Generation of 10,154 expressed sequence tags from a leafy gametophyte of a marine red alga, Porphyra yezoensis
    • Nikaido I, Asamizu E, Nakajima M, Nakamura Y, Saga N, Tabata S (2000) Generation of 10,154 expressed sequence tags from a leafy gametophyte of a marine red alga, Porphyra yezoensis. DNA Res 7:223-227
    • (2000) DNA Res , vol.7 , pp. 223-227
    • Nikaido, I.1    Asamizu, E.2    Nakajima, M.3    Nakamura, Y.4    Saga, N.5    Tabata, S.6
  • 26
    • 0037381973 scopus 로고    scopus 로고
    • The phylogenetic position of red algae revealed by multiple nuclear genes from mitochondria-containing eukaryotes and an alternative hypothesis on the origin of plastids
    • Nozaki H, Matsuzakil M, Takahara M, Misumil O, Kuroiwa H, Hasegawa M, Shin-i T, Kohara Y, Ogasawara N, Kuroiwa T (2003a) The phylogenetic position of red algae revealed by multiple nuclear genes from mitochondria-containing eukaryotes and an alternative hypothesis on the origin of plastids. J Mol Evol 56:485-497
    • (2003) J Mol Evol , vol.56 , pp. 485-497
    • Nozaki, H.1    Matsuzakil, M.2    Takahara, M.3    Misumil, O.4    Kuroiwa, H.5    Hasegawa, M.6    Shin-i, T.7    Kohara, Y.8    Ogasawara, N.9    Kuroiwa, T.10
  • 27
    • 0142043938 scopus 로고    scopus 로고
    • Phylogeny of plastids based on cladistic analysis of gene loss inferred from complete plastid genome sequences
    • Nozaki H, Ohta N, Matsuzaki M, Misumi O, Kuroiwa T (2003b) Phylogeny of plastids based on cladistic analysis of gene loss inferred from complete plastid genome sequences. J Mol Evol 57:377-382
    • (2003) J Mol Evol , vol.57 , pp. 377-382
    • Nozaki, H.1    Ohta, N.2    Matsuzaki, M.3    Misumi, O.4    Kuroiwa, T.5
  • 28
    • 0037572303 scopus 로고    scopus 로고
    • Analyses of the complete nucleotide sequence of the plastid genome of the unicellular red alga Cyanidioschyzon merolae: Genome structure, gene organization, and gene content
    • Ohta N, Matsuzaki M, Misumi O, Miyagishima S, Nozaki H, Tanaka K, Shin-i T, Kohara Y, Kuroiwa T (2003) Analyses of the complete nucleotide sequence of the plastid genome of the unicellular red alga Cyanidioschyzon merolae: Genome structure, gene organization, and gene content. DNA Res 10:67-77
    • (2003) DNA Res , vol.10 , pp. 67-77
    • Ohta, N.1    Matsuzaki, M.2    Misumi, O.3    Miyagishima, S.4    Nozaki, H.5    Tanaka, K.6    Shin-i, T.7    Kohara, Y.8    Kuroiwa, T.9
  • 29
  • 30
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 31
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira H, Hasegawa M (1999) Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol Biol Evol 16:1114-1116
    • (1999) Mol Biol Evol , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 32
    • 0036139287 scopus 로고    scopus 로고
    • CONSEL: For assessing the confidence of phylogenetic tree selection
    • Shimodaira H, Hasegawa M (2001) CONSEL: For assessing the confidence of phylogenetic tree selection. Bioinformatics 17:1246-1247
    • (2001) Bioinformatics , vol.17 , pp. 1246-1247
    • Shimodaira, H.1    Hasegawa, M.2
  • 33
    • 0037025197 scopus 로고    scopus 로고
    • Rooting the eukaryote tree by using a derived gene fusion
    • Stechmann A, Cavalier-Smith T (2002) Rooting the eukaryote tree by using a derived gene fusion. Science 297:89-91
    • (2002) Science , vol.297 , pp. 89-91
    • Stechmann, A.1    Cavalier-Smith, T.2
  • 34
    • 0032578482 scopus 로고    scopus 로고
    • Amitochondriate amoebae and the evolution of DNA-dependent RNA polymerase II
    • Stiller JW, Duffield ECS, Hall BD (1998) Amitochondriate amoebae and the evolution of DNA-dependent RNA polymerase II. Proc Natl Acad Sci USA 95:11769-11774
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 11769-11774
    • Stiller, J.W.1    Duffield, E.C.S.2    Hall, B.D.3
  • 35
    • 0034986210 scopus 로고    scopus 로고
    • Are red algae plants? A critical evaluation of three key molecular data sets
    • Stiller JW, Riley J, Hall BD (2001) Are red algae plants? A critical evaluation of three key molecular data sets. J Mol Evol 52:527-539
    • (2001) J Mol Evol , vol.52 , pp. 527-539
    • Stiller, J.W.1    Riley, J.2    Hall, B.D.3
  • 36
    • 0029836454 scopus 로고    scopus 로고
    • Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies
    • Strimmer K, Von Haeseler A (1996) Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies. Mol Biol Evol 13:964-969
    • (1996) Mol Biol Evol , vol.13 , pp. 964-969
    • Strimmer, K.1    Von Haeseler, A.2
  • 38
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 39
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang Z (1997) PAML: A program package for phylogenetic analysis by maximum likelihood. CABIOS 13:555-556
    • (1997) CABIOS , vol.13 , pp. 555-556
    • Yang, Z.1
  • 40
    • 0037015024 scopus 로고    scopus 로고
    • A single origin of the peridinin- and fucoxanthin-containing plastids in dinoflagellates through tertiary endosymbiosis
    • Yoon HS, Hackett JD, Bhattacharya D (2002a) A single origin of the peridinin- and fucoxanthin-containing plastids in dinoflagellates through tertiary endosymbiosis. Proc Natl Acad Sci USA 99:11724-11729
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 11724-11729
    • Yoon, H.S.1    Hackett, J.D.2    Bhattacharya, D.3


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