Repeat-modulated population genetic effects in fungal proteins

Journal of Molecular Evolution

Volumn 59, Issue 1, 2004, Pages 97-102

  Braun, F N ^a   Liberles, D A ^a,b  

^a STOCKHOLM UNIVERSITY   (Sweden)

^b UNIVERSITY OF BERGEN   (Norway)

Author keywords

Fungi; Gene duplication; Population genetic variability; Protein evolution

Indexed keywords

FUNGAL PROTEIN;

ARTICLE; CONTROLLED STUDY; GENE DUPLICATION; GENE FUNCTION; GENE MUTATION; GENE SEQUENCE; GENE SILENCING; GENOMICS; HYDROPHOBICITY; NEUROSPORA CRASSA; NONHUMAN; NUCLEOTIDE REPEAT; PROTEIN FUNCTION; PROTEIN STRUCTURE; STOP CODON;

FUNGI; NEUROSPORA; NEUROSPORA CRASSA;

EID: 3042722091     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-004-2608-9     Document Type: Article

References (13)

1. Braun FN (2004) Sequence variability of proteins evolutionarily constrained by solution-thermodynamic function. Phys Rev E 69:011903:1-8
2. Bryngelson JD, Billings EM (1997) From interatomic interactions to protein structure. In: Flyvbjerg H. et al (eds) Physics of biological systems: From molecules to species.
3. Chan HS, Bornberg-Bauer E (2002) Principles of protein evolution: A perspective from simple exact models. Appl Bioinform 1:121-144
4. Cui Y, Wong WH, Bornberg-Bauer E, Chan HS (2002) Recombinatoric exploration of novel folded structures: A heteropolymer-based model of protein evolutionary landscapes. Proc Natl Acad Sci USA 99(2):809-814
5. Dill KA (1985) Theory of the folding and stability of globular proteins. Biochemistry 24:1501-1509
6. Galagan JE, et al. (2003) The genome sequence of the filamentous fungus Neurospora crassa. Nature 422:859-868
7. Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN (ed) Mammalian protein metabolism, Academic Press, New York, pp 21-123
8. Lynch M, Conery JS (2000) The evolutionary fate and consequences of duplicate genes. Science 290:1151-1155
9. Meyer P (1996) Repeat-induced gene silencing: Common mechanisms in plants and fungi. Biol Chem Hoppe-Seyler 377:87-95
10. Taverna DM, Goldstein RA (2002) Why are proteins marginally stable? Proteins 46:105-109
11. Watters MK, Randall TA, Margolin BS, Selker EU, Stadler DR (1999) Action of repeat-induced point mutation on both strands of a duplex and on tandem duplications of various sized in neurospora. Genetics 153:705-714
12. Xia Y, Levitt M (2002) Roles of mutation and recombination in the evolution of protein thermodynamics. Proc Natl Acad Sci USA 99(16):10382-10387
13. Zuckerkandl E, Pauling L (1965) Evolutionary divergence and convergence in proteins. In: Bryson V, Vogel HJ (eds) Evolving genes and proteins. Academic Press, New York, pp 97-166