Single-molecule enzymology of RNA: Essential functional groups impact catalysis from a distance

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 27, 2004, Pages 10066-10071

  Rueda, David ^a   Bokinsky, Gregory ^b   Rhodes, Maria M ^a   Rust, Michael J ^c   Zhuang, Xiaowei ^b,c   Walter, Nils G ^a  

^a UNIVERSITY OF MICHIGAN   (United States)

^b HARVARD UNIVERSITY   (United States)

^c HARVARD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOZYME; RNA;

ALLOSTERISM; ARTICLE; CATALYSIS; ENZYME ACTIVE SITE; ENZYME KINETICS; ENZYMOLOGY; FLUORESCENCE RESONANCE ENERGY TRANSFER; FRACTIONATION; HUMAN; MOLECULAR DYNAMICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN ENGINEERING;

CATALYSIS; FLUORESCENCE RESONANCE ENERGY TRANSFER; KINETICS; RNA; RNA, CATALYTIC;

RUMEX;

EID: 3042709638     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0403575101     Document Type: Article

References (24)

1. Treiber, D. K. & Williamson, J. R. (2001) Curr. Opin. Struct. Biol. 11, 309-314.
2. Walter, N. G., Harris, D. A., Pereira, M. J. & Rueda, D. (2001) Biopolymers 61, 224-242.
3. Thirumalai, D., Lee, N., Woodson, S. A. & Klimov, D. (2001) Annu. Rev. Phys. Chem. 52, 751-762.
4. Walter, N. G. & Burke, J. M. (1998) Curr. Opin. Chem. Biol. 2, 24-30.
5. Fedor, M. J. (2000) J. Mol. Biol. 297, 269-291.
6. Ferre-D'Amare, A. R. (2004) Biopolymers 73, 71-78.
7. Shippy, R., Lockner, R., Farnsworth, M. & Hampel, A. (1999) Mol. Biotechnol. 12, 117-129.
8. Ryder, S. P. & Strobel, S. A. (1999) J. Mol. Biol. 291, 295-311.
9. Rupert, P. B. & Ferre-D'Amare, A. R. (2001) Nature 410, 780-786.
10. Pinard, R., Hampel, K. J., Heckman, J. E., Lambert, D., Chan, P. A., Major, F. & Burke, J. M. (2001) EMBO J. 20, 6434-6442.
11. Lebruska, L. L., Kuzmine, I. I. & Fedor, M. J. (2002) Chem. Biol. 9, 465-473.
12. Rupert, P. B., Massey, A. P., Sigurdsson, S. T. & Ferre-D'Amare, A. R. (2002) Science 298, 1421-1424.
13. Benkovic, S. J. & Hammes-Schiffer, S. (2003) Science 301, 1196-1202.
14. Walter, N. G., Hampel, K. J., Brown, K. M. & Burke, J. M. (1998) EMBO J. 17, 2378-2391.
15. Zhuang, X., Kim, H., Pereira, M. J., Babcock, H. P., Walter, N. G. & Chu, S. (2002) Science 296, 1473-1476.
16. Bokinsky, G., Rueda, D., Misra, V. K., Rhodes, M. M., Gordus, A., Babcock, H. P., Walter, N. G. & Zhuang, X. (2003) Proc. Natl. Acad. Sci. USA 100, 9302-9307.
17. Walter, N. G. (2001) Methods 25, 19-30.
18. Esteban, J. A., Banerjee, A. R. & Burke, J. M. (1997) J. Biol. Chem. 272, 13629-13639.
19. Gutfreund, H. (1995) Kinetics for the Life Sciences: Receptors, Transmitters and Catalysts (Cambridge Univ. Press, Cambridge, U.K.).
20. Tan, E., Wilson, T. J., Nahas, M. K., Clegg, R. M., Lilley, D. M. & Ha, T. (2003) Proc. Natl. Acad. Sci. USA 100, 9308-9313.
21. Lu, H. P., Xun, L. & Xie, X. S. (1998) Science 282, 1877-1882.
22. Zhuang, X. & Rief, M. (2003) Curr. Opin. Struct. Biol. 13, 88-97.
23. Moore, P. B. & Steitz, T. A. (2003) Annu. Rev. Biochem. 72, 813-850.
24. Silverman, S. K. (2003) RNA 9, 377-383.