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Volumn 362, Issue 1820, 2004, Pages 1461-1477

Nonlinear breathing modes due to a defect in a DNA chain

Author keywords

Breathers; Defect; Lattice model; Localization

Indexed keywords


EID: 3042625719     PISSN: 1364503X     EISSN: None     Source Type: Journal    
DOI: 10.1098/rsta.2004.1391     Document Type: Article
Times cited : (7)

References (20)
  • 2
    • 0034185195 scopus 로고    scopus 로고
    • Base opening in RNA and DNA duplexes: Implication for RNA stability
    • Chen, Y. Z., Mohan, V. & Griffey, R. H. 2000 Base opening in RNA and DNA duplexes: implication for RNA stability. Phys. Rev. E 61, 5640-5645.
    • (2000) Phys. Rev. E , vol.61 , pp. 5640-5645
    • Chen, Y.Z.1    Mohan, V.2    Griffey, R.H.3
  • 3
    • 0033595533 scopus 로고    scopus 로고
    • Observation of spontaneous base-pair breathing events in the molecular-dynamics simulations of a difluorotoluene-containing DNA oligonucleotide
    • Cubero, E., Sherer, E. C., Luque, F. J., Orozco, M. & Laughton, C. A. 1999 Observation of spontaneous base-pair breathing events in the molecular-dynamics simulations of a difluorotoluene-containing DNA oligonucleotide. J. Am. Chem. Soc. 121, 8653-8654.
    • (1999) J. Am. Chem. Soc. , vol.121 , pp. 8653-8654
    • Cubero, E.1    Sherer, E.C.2    Luque, F.J.3    Orozco, M.4    Laughton, C.A.5
  • 4
    • 0015505353 scopus 로고
    • Hydrogen-exchange study of some polynucleotides and transfer RNA
    • J. J., Kallenbach, N. R. & Englander, S. W. 1972 Hydrogen-exchange study of some polynucleotides and transfer RNA. J. Mol. Biol. 63, 153-169.
    • (1972) J. Mol. Biol. , vol.63 , pp. 153-169
    • Englander, J.J.1    Kallenbach, N.R.2    Englander, S.W.3
  • 5
    • 0024846232 scopus 로고
    • Crystallographic study of one turn of G/C-rich B-DNA
    • Heinemann, U. & Alings, C. 1989 Crystallographic study of one turn of G/C-rich B-DNA. J. Mol. Biol. 210, 369-381.
    • (1989) J. Mol. Biol. , vol.210 , pp. 369-381
    • Heinemann, U.1    Alings, C.2
  • 6
    • 0018622828 scopus 로고
    • Base-pair opening and closing reactions in the double helix
    • Mandal, C., Kallenbach, N. R. & Englander, S. W. 1979 Base-pair opening and closing reactions in the double helix. J. Mol. Biol. 135, 391-411.
    • (1979) J. Mol. Biol. , vol.135 , pp. 391-411
    • Mandal, C.1    Kallenbach, N.R.2    Englander, S.W.3
  • 7
    • 0036283344 scopus 로고    scopus 로고
    • Sequence-dependent motions of DNA: A normal mode analysis at the base-pair level
    • Matsumoto, A. & Olson, W. K. 2002 Sequence-dependent motions of DNA: a normal mode analysis at the base-pair level. Biophys. J. 83, 22-41.
    • (2002) Biophys. J. , vol.83 , pp. 22-41
    • Matsumoto, A.1    Olson, W.K.2
  • 8
    • 0023513912 scopus 로고
    • The structure of an oligo(dA).oligo(dT) tract and its biological implications
    • Nelson, H. C. M., Finch, J. T., Bonaventura, F. L. & Klug, A. 1987 The structure of an oligo(dA).oligo(dT) tract and its biological implications. Nature 330, 221-226.
    • (1987) Nature , vol.330 , pp. 221-226
    • Nelson, H.C.M.1    Finch, J.T.2    Bonaventura, F.L.3    Klug, A.4
  • 10
    • 0027317556 scopus 로고
    • Influence of fluctuations on DNA curvature - A comparison of flexible and static wedge models of intrinsically bent DNA
    • Olson, W. K., Marky, N. L., Jernigan, R. L. & Zhurkin, V. B. 1993 Influence of fluctuations on DNA curvature - a comparison of flexible and static wedge models of intrinsically bent DNA. J. Mol. Biol. 232, 530-551.
    • (1993) J. Mol. Biol. , vol.232 , pp. 530-551
    • Olson, W.K.1    Marky, N.L.2    Jernigan, R.L.3    Zhurkin, V.B.4
  • 11
    • 4243187319 scopus 로고
    • Statistical mechanics of a nonlinear model for DNA denaturation
    • Peyrard, M. & Bishop, A. R. 1989 Statistical mechanics of a nonlinear model for DNA denaturation. Phys. Rev. Lett. 62, 2755-2758.
    • (1989) Phys. Rev. Lett. , vol.62 , pp. 2755-2758
    • Peyrard, M.1    Bishop, A.R.2
  • 12
    • 0004707094 scopus 로고
    • Dynamics of nonlinear excitations in DNA
    • Peyrard, M. & Bishop, A. R. 1990 Dynamics of nonlinear excitations in DNA. Lecture Notes in Physics, vol. 353, pp. 29-41.
    • (1990) Lecture Notes in Physics , vol.353 , pp. 29-41
    • Peyrard, M.1    Bishop, A.R.2
  • 13
    • 0034501429 scopus 로고    scopus 로고
    • Nonlinear localisation in thermalized lattices: Application to DNA
    • Peyrard, M. & Farago, J. 2000 Nonlinear localisation in thermalized lattices: application to DNA. Physica A 288, 199-217.
    • (2000) Physica A , vol.288 , pp. 199-217
    • Peyrard, M.1    Farago, J.2
  • 14
    • 35949023519 scopus 로고
    • Low-amplitude breather and envelope solitons in quasi-one-dimensional physical models
    • Remoissenet, M. 1986 Low-amplitude breather and envelope solitons in quasi-one-dimensional physical models. Phys. Rev. B 33, 2386-2392.
    • (1986) Phys. Rev. B , vol.33 , pp. 2386-2392
    • Remoissenet, M.1
  • 15
    • 0000340939 scopus 로고
    • Discrete model for DNA promoter dynamics
    • Salerno, M. 1991 Discrete model for DNA promoter dynamics. Phys. Rev. A 44, 5292-5297.
    • (1991) Phys. Rev. A , vol.44 , pp. 5292-5297
    • Salerno, M.1
  • 17
    • 0033527667 scopus 로고    scopus 로고
    • DNA structure and polymerase fidelity
    • Timsit, Y. 1999 DNA structure and polymerase fidelity. J. Mol. Biol. 293, 835-853.
    • (1999) J. Mol. Biol. , vol.293 , pp. 835-853
    • Timsit, Y.1
  • 18
    • 0032502555 scopus 로고    scopus 로고
    • Stationary breather modes of generalised nonlinear Klein-Gordon lattices
    • Wattis, J. A. D. 1998 Stationary breather modes of generalised nonlinear Klein-Gordon lattices. J. Phys. A Math. Gen. 31, 3301-3323.
    • (1998) J. Phys. A Math. Gen. , vol.31 , pp. 3301-3323
    • Wattis, J.A.D.1
  • 19
    • 0035365354 scopus 로고    scopus 로고
    • Dynamic model of base-pair breathing in a DNA chain with a defect
    • Wattis, J. A. D., Harris, S. A., Grindon, C. & Laughton, C. A. 2001 Dynamic model of base-pair breathing in a DNA chain with a defect. Phys. Rev. E 63, 061903.
    • (2001) Phys. Rev. E , vol.63 , pp. 061903
    • Wattis, J.A.D.1    Harris, S.A.2    Grindon, C.3    Laughton, C.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.