Crystal structure of the biologically active form of class Ib ribonucleotide reductase small subunit from Mycobacterium tuberculosis

FEBS Letters

Volumn 569, Issue 1-3, 2004, Pages 117-122

  Uppsten, Malin ^a   Davis, Jamaine ^b   Rubin, Harvey ^b   Uhlin, Ulla ^a  

^a SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^b UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

Crystal structure; Diiron carboxylate protein; EPR, electron paramagnetic resonance; Mtb, Mycobacterium tuberculosis; Mycobacterium tuberculosis; R2; Ribonucleotide reductase; RNR, ribonucleotide reductase; Tyrosyl radical

Indexed keywords

ISOENZYME; RIBONUCLEOTIDE REDUCTASE;

ARTICLE; CARBOXY TERMINAL SEQUENCE; COMPLEX FORMATION; CRYSTAL STRUCTURE; GENE SEQUENCE; GENETIC CODE; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; OXIDATION REDUCTION REACTION; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN STRUCTURE; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CRYSTALLOGRAPHY, X-RAY; MODELS, MOLECULAR; MYCOBACTERIUM TUBERCULOSIS; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; PROTEIN SUBUNITS; RIBONUCLEOTIDE REDUCTASES;

MYCOBACTERIUM; MYCOBACTERIUM TUBERCULOSIS;

EID: 3042589730     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.febslet.2004.05.059     Document Type: Article

References (56)

1. Reichard P. Science. 260:1993;1773-1777
2. Stubbe J. J. Biol. Chem. 265:1990;5329-5332
3. Sjöberg B.M. Struct. Bonding. 88:1997;139-173
4. Eklund H., Uhlin U., Färnegårdh M., Logan D.T., Nordlund P. Prog. Biophys. Mol. Biol. 77:2001;177-268
5. Gräslund A., Sahlin M. Annu. Rev. Biophys. Biomol. Struct. 25:1996;259-286
6. Stubbe J., van der Donk W.A. Chem. Rev. 98:1998;705-762
7. Eliasson R., Pontis E., Jordan A., Reichard P. J. Biol. Chem. 271:1996;26582-26587
8. Dawes S.S., Warner D.F., Tsenova L., Timm J., McKinney J.D., Kaplan G., Rubin H., Mizrahi V. Infect. Immun. 71:2003;6124-6131
9. Gräslund A., Sahlin M., Sjöberg B.M. Environ. Health Perspect. 64:1985;139-149
10. Larsson A., Sjöberg B.M. EMBO J. 5:1986;2037-2040
11. Thelander L., Reichard P. Annu. Rev. Biochem. 48:1979;133-158
12. Eriksson, M. (1997) in: Department of Molecular Biology Swedish University of Agricultural Sciences, Uppsala
13. Uppsten M., Färnegårdh M., Jordan A., Eliasson R., Eklund H., Uhlin U. J. Mol. Biol. 330:2003;87-97
14. Jordan A., Gibert I., Barbe J. J. Bacteriol. 176:1994;3420-3427
15. von Döbeln U., Reichard P. J. Biol. Chem. 251:1976;3616-3622
16. Ehrenberg A., Reichard P. J. Biol. Chem. 247:1972;3485-3488
17. Climent I., Sjöberg B.M., Huang C.Y. Biochemistry. 31:1992;4801-4807
18. Nordlund P., Sjöberg B.M., Eklund H. Nature. 345:1990;593-598
19. Uhlin U., Eklund H. Nature. 370:1994;533-539
20. Siegbahn P.E.M., Blomberg M.R.A., Crabtree R.H. Theor. Chem. Acc. 97:1997;289-300
21. Mao S.S., Holler T.P., Yu G.X., Bollinger J.M. Jr., Booker S., Johnston M.I., Stubbe J. Biochemistry. 31:1992;9733-9743
22. Jordan A., Pontis E., Åslund F., Hellman U., Gibert I., Reichard P. J. Biol. Chem. 271:1996;8779-8785
23. Scotti C., Valbuzzi A., Perego M., Galizzi A., Albertini A.M. Microbiology (UK). 142:1996;2995-3004
24. Fraser C.M., Gocayne J.D., White O., Adams M.D., Clayton R.A., Fleischmann R.D., Bult C.J., Kerlavagne A.R., Sutton G., Kelley J.M., Fritchman J.L., Weidman J.F., Small K.V., Sandusky M., Fuhrmann J., Nguyen D., Utterback T.R., Saudek D.M., Venter J.C. Science. 270:1995;397-403
25. Yang F.D., Lu G.Z., Rubin H. J. Bacteriol. 176:1994;6738-6743
26. WHO (2003) Geneva
27. Yang F.D., et al. J. Bacteriol. 179:1997;6408-6415
28. Cohen E.A., Gaudreau P., Brazeau P., Langlier Y. Nature. 321:1986;441-442
29. Dutia B.M., Frame M.C., Subak-Sharpe J.H., Clark W.N., Marsden H.S. Nature. 321:1986;439-441
30. Cosentino G., et al. Biochem. Cell Biol. 69:1991;79-83
31. Eriksson M., Jordan A., Eklund H. Biochemistry. 37:1998;13359-13369
32. Högbom M., Huque Y., Sjöberg B.M., Nordlund P. Biochemistry. 41:2002;1381-1389
33. Otwinowski Z., Minor W. Methods Enzymol. 276:1997;307-326
34. Vagin A., Teplyakov A. J. Appl. Cryst. 30:1997;1022-1025
35. Collabororative Computational Project No. 4 (1994) Acta Crystallogr. D 50, 760-763
36. Schwede T., Kopp J., Guex N., Peitsch M.C. Nucleic Acids Res. 31:2003;3381-3385
37. Murshudov G.N., Vagin A.A., Dodson E.J. Acta Crystallogr., Sect. D. 53:1997;240-255
38. Perrakis A., Sixma T.K., Wilson K.S., Lamzin V.S. Acta Crystallogr., Sect. D. 53:1997;448-455
39. Jones T.A., Zou J.Y., Cowan S.W., Kjeldgaard M. Acta Crystallogr. 47:1991;110-119
40. Laskowski R.A., Macarthur M.W., Moss D.S., Thornton J.M. J. Appl. Crystallogr. 26:1993;283-291
41. Vaguine A.A., Richelle J., Wodak S.J. Acta Crystallogr., Sect. D. 55:1999;191-205
42. Kleywegt, G.J., Harris, M.R., Zou, J.Y., Taylor, T.C., Wählby, A. and Jones, T.A. (2003) The Uppsala Electron Density Server, accepted (Acta Cryst. D/CCP4 Proceedings)
43. Kleywegt G.J., Jones T.A. Acta Crystallogr., Sect. D. 54:1998;1119-1131
44. Kauppi B., Nielsen B.B., Ramaswamy S., Larsen I.K., Thelander M., Thelander L., Eklund H. J. Mol. Biol. 262:1996;706-720
45. Lycksell P.O., Ingemarson R., Davis R., Gräslund A., Thelander L. Biochemistry. 33:1994;2838-2842
46. Lycksell P.O., Sahlin M. FEBS Lett. 368:1995;441-444
47. Yang F.D., Spanevello R.A., Celiker I., Hirschmann R., Rubin H., Cooperman B.S. FEBS Lett. 272:1990;61-64
48. Climent I., Sjöberg B.M., Huang C.Y. Biochemistry. 30:1991;5164-5171
49. Logan D.T., Su X.D., Åberg A., Regnström K., Hajdu J., Eklund H., Nordlund P. Structure. 4:1996;1053-1064
50. Lindqvist Y., Huang W.J., Schneider G., Shanklin J. EMBO J. 15:1996;4081-4092
51. Liu A., Potsch S., Davydov A., Barra A.L., Rubin H., Gräslund A. Biochemistry. 37:1998;16369-16377
52. Elleingand E., et al. Eur. J. Biochem. 258:1998;485-490
53. Liu A.M., Barra A.L., Rubin H., Lu G.Z., Gräslund A. J. Am. Chem. Soc. 122:2000;1974-1978
54. Liu A., Gräslund A. J. Biol. Chem. 275:2000;12367-12373
55. DeLano, W.L. (2002) DeLano Scientific, San Carlos
56. Guex N., Peitsch M.C. Electrophoresis. 18:1997;2714-2723