A stochastic gene evolution model with time dependent mutations

Bulletin of Mathematical Biology

Volumn 66, Issue 4, 2004, Pages 763-778

  Bahi, Jacques M ^a   Michel, Christian J ^b  

^a UNIVERSITÉ DE FRANCHE COMTÉ   (France)

^b Faculté de Médecine   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOLOGICAL MODEL; CODON; GENE; GENETIC CODE; GENETICS; MOLECULAR EVOLUTION; MUTATION; STATISTICS;

CODON; EVOLUTION, MOLECULAR; GENES; GENETIC CODE; MODELS, GENETIC; MUTATION; STOCHASTIC PROCESSES;

EID: 3042556336     PISSN: 00928240     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bulm.2003.10.004     Document Type: Article

References (21)

1. Akashi H., Eyre-Walker A. Translational selection and molecular evolution. Curr. Opin. Genet. Dev. 8:1998;688-693
2. Arquès D.G., Fallot J.-P., Michel C.J. An evolutionary analytical model of a complementary circular code simulating the protein coding genes, the 5′ and 3′ regions. Bull. Math. Biol. 60:1998;163-194
3. Arquès D.G., Michel C.J. A complementary circular code in the protein coding genes. J. Theor. Biol. 182:1996;45-58
4. Béal M.-P. Codage Symbolique. 1993;Masson, Paris
5. Berg O.G., Silva P.J.N. Codon bias in Escherichia coli: the influence of codon context on mutation and selection. Nucleic Acids Res. 25:1997;1397-1404
6. Berstel J., Perrin D. Theory of Codes. 1985;Academic Press, New York
7. Campbell A., Mrázek J., Karlin S. Genomic signature comparisons among prokaryote, plasmid, and mitochondrial DNA. Proc. Natl. Acad. Sci. USA. 96:1999;9184-9189
8. Crick F.H.C., Griffith J.S., Orgel L.E. Codes without commas. Proc. Natl. Acad. Sci. USA. 43:1957;416-421
9. Ermolaeva M.D. Synonymous codon usage in bacteria. Curr. Issues Mol. Biol. 3:2001;91-97
10. Grantham R., Gautier C., Gouy M., Mercier R., Pave A. Codon catalog usage and the genome hypothesis. Nucleic Acids Res. 8:1980;r49-r62
11. Ikemura T. Codon usage and tRNA content in unicellular and multicellular organisms. Mol. Biol. Evol. 2:1985;12-34
12. Jukes T.H., Bhushan V. Silent nucleotide substitutions and G+C content of some mitochondrial and bacterial genes. J. Mol. Evol. 24:1986;39-44
13. Jukes T.H., Cantor C.R. Evolution of protein molecules. Munro H.N. Mammalian Protein Metabolism. 1969;21-132 Academic Press, New York
14. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:1980;111-120
15. Kimura M. Estimation of evolutionary distances between homologous nucleotide sequences. Proc. Natl. Acad. Sci. USA. 78:1981;454-458
16. Koch A.J., Lehmann J. About a symmetry of the genetic code. J. Theor. Biol. 189:1997;171-174
17. Konu O., Li M.D. Correlations between mRNA expression levels and GC contents of coding and untranslated regions of genes in rodents. J. Mol. Evol. 54:2002;35-41
18. Kozak M. Pushing the limits of the scanning mechanism for initiation of translation. Gene. 299:2002;1-34
19. Lacan J., Michel C.J. Analysis of a circular code model. J. Theor. Biol. 213:2001;159-170
20. Sharp P.M., Matassi G. Codon usage and genome evolution. Curr. Opin. Genet. Dev. 4:1994;851-860
21. Shpaer E.G. Constraints on codon context in Escherichia coli genes. Their possible role in modulating the efficiency of translation. J. Mol. Biol. 188:1986;555-564