Limitations on the use of polymerase chain reaction - Restriction fragment length polymorphism analysis of the rDNA NTS2 region for the taxonomic classification of the species Saccharomyces cerevisiae

Canadian Journal of Microbiology

Volumn 51, Issue 9, 2005, Pages 759-764

  Pulvirenti, Andrea ^a   Solieri, Lisa ^a   De Vero, Luciana ^a   Giudici, Paolo ^a  

^a UNIVERSITY OF MODENA AND REGGIO EMILIA   (Italy)

Author keywords

Ribosomal DNA; Saccharomyces cerevisiae; Yeast identification

Indexed keywords

DNA; ELECTROPHORESIS; MOLECULAR BIOLOGY; STRAIN; YEAST;

POLYMERASE CHAIN REACTION; RIBOSOMAL DNA; SACCHAROMYCES CEREVISIAE; YEAST IDENTIFICATION;

ENZYMES;

GENOMIC DNA; RIBOSOME DNA;

POLYMERASE CHAIN REACTION; TAXONOMY; YEAST;

ARTICLE; DNA SEQUENCE; FUNGUS IDENTIFICATION; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PULSED FIELD GEL ELECTROPHORESIS; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE; TAXONOMIC IDENTIFICATION; YEAST;

DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA, FUNGAL; DNA, RIBOSOMAL SPACER; MYCOLOGICAL TYPING TECHNIQUES; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SACCHAROMYCES CEREVISIAE;

FUNGI; SACCHAROMYCES CEREVISIAE;

EID: 30344438546     PISSN: 00084166     EISSN: None     Source Type: Journal    
DOI: 10.1139/W05-062     Document Type: Article

References (28)

1. Barnett, J.A. 1992. The taxonomy of the genus Saccharomyces. Meyen ex Reess: a short review for non-taxonomist. Yeast, 8: 1-23.
2. Dear, S., and Staden, R. 1991. A sequence assembly and editing program for efficient management of large sequence project. Nucleic Acids Res. 19: 3907-3911.
3. Esteve-Zarzoso, B., Belloch, C., Uruburu, F., and Querol, A. 1999. Identification of yeast by RFLP analysis of the 5.8S rRNA gene and the two ribosomal internal transcribed spacers. Int. J. Syst. Bacteriol. 49: 329-337.
4. Giudici, P., Caggia, C., Pulvirenti, A., and Rainieri, S. 1998. Karyotyping of Saccharomyces strains with different temperature profiles. J. Appl. Bacteriol. 84: 811-819.
5. Giudici, P., Caggia, C., Pulvirenti, A., and Restuccia, C. 1999. Cryotolerant Saccharomyces strain and spoilage of refrigerated must. Ann. Microbiol. Enzymol. 49: 155-163.
6. Guillamön, J.M., Sabaté, J., Barrio, E., Cano, J., and Querol, A. 1998. Rapid identification of wine yeast species based on RFLP analysis of the ribosomal ITS region. Arch. Microbiol. 169: 387-392.
7. Guteil, R.R., Larsen, N., and Woese, C.R. 1994. Lessons from an evolving rRNA: 16S and 23S rRNA structures from a compara-tive prospective. Microbiol. Rev. 58: 10-26.
8. Hoffman, C., and Winston, F. 1987. A ten minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli. Gene, 57: 267-272.
9. Hopfl, P., Ludwig, W., Schleifer, K., and Larsen, N. 1989. The 23S ribosomal RNA higher-order structure of Pseudomonas cepacea and other prokaryotes. Eur. J. Biochem. 185: 355-364.
10. Johnston, J. 1996. Genome sequencing: the complete code for a eukaryotic cell. Curr. Biol. 5: 500-503.
11. Kreger van Rij, N.J.N.W. 1984. The yeasts: a taxonomic study. Elsevier Science Publishers, Amsterdam.
12. Kurtzman, C.P. 1987. Prediction of biological relatedness among yeast from comparising nuclear DNA complementarity. Stud. Mycol. 6: 30-459.
13. Kurtzman, C.P., and Robnett, C.J. 1998. Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large sub-unit (26S) rDNA partial sequences. Antonie Leeuwenhoek. 73: 331-371.
14. McCarroll, R., Olsen, G.J., Stahl, Y.D., Woese, C.R., and Sogin, M.L. 1983. Nucleotide sequence of Dictyostelium discoideum small-subunit ribosomal ribonucleic acid inferred from the gene sequence: evolutionary implications. Biochemistry, 22: 5858-5868.
15. Molina, F.I., Inoue, T., and Jong, S.C. 1992. Restriction polymorphisms in the internal transcribed spacers and 5.8S rDNA of Saccharomyces. Curr. Microbiol. 25: 251-255.
16. Naumov, G.I., Naumova, E., and Korhola, M. 1992. Genetic homology between Saccharomyces cerevisiae and its sibling species Saccharomyces paradoxus and Saccharomyces bayanus: electrophoresis karyotypes. Yeast, 8: 599-612.
17. Ness, F., Lavallee, F., Dubourdieu, D., Aigle, M., and Dulau, L. 1993. Identification of yeast strains using the polymerase chain reaction. J. Sci. Food Agric. 62: 89-94.
18. Nguyen, H.V., and Gaillardin, C. 1997. Two subgroups within the Saccharomyces bayanus species evidenced by PCR amplification and restriction polymorphism of the nontranscribed spacer 2 in the ribosomal DNA unit. Syst. Appl. Microbiol. 20: 286-294.
19. Nguyen, H.V., Lepingle, A., and Gaillardin, C. 2000a. Molecular typing demonstrates homogeneity of Saccharomyces uvarum strains and reveals the existence of hybrids between S. uvarum and S. cerevisiae, including the S. bayanus type strain CBS 380. Syst. Appl. Microbiol. 23: 71-85.
20. Nguyen, H.-V., Pulvirenti, A., and Gaillardin, C. 2000b. Rapid differentiation of the closely related Kluyveromyces lactis var. lactis and Kluyveromyces marxianus strains isolated from dairy products using selective media and PCR/RFLP of the rDNA non transcribed spacer 2. Can. J. Microbiol. 46: 1115-1122.
21. Pulvirenti, A., Nguyen, V., Caggia, C., Giudici, P., Rainieri, S., and Zambonelli, C. 2000. Saccharomyces uvarum, a proper species within Saccharomyces sensu stricto. FEMS Microbiol. Lett. 192: 191-196.
22. Pulvirenti, A., Caggia, C., Restuccia, C., Gullo, M., and Giudici, P. 2001. DNA fingerprinting methods used for identification of yeasts isolated from Sicilian sourdough. Ann. Microbiol. 51: 107-120.
23. Pulvirenti, A., Solieri, L., Gullo, M., and Giudici, P. 2004. Occurrence and dominance of yeast species in sourdough. Lett. Appl. Microbiol. 38: 113-117.
24. Schwartz, D.H., and Cantor, C.R. 1984. Separation of yeast chromosome-sized DNAs by pulsed field gradient gel electrophoresis. Cell, 37: 67-75.
25. Solieri, L., De Vero, L., Gullo, M., and Pulvirenti, A. 2003. Studio molecolare e fenotipico di lieviti in paste acide tradizionali. Ind. Aliment. (Pinerolo, Italy), 42(429): 971-978.
26. Vaughan-Martini, A., Martini, A., and Cardinali, G. 1993. Electrophoretic karyotyping as a taxonomic tool in the genus Saccharomyces. Antonie Leeuwenhoek. 62: 145-156.
27. Vezinhet, F., Blondin, B., Hallety, J.N. 1990. Chromosomal DNA pattern and mitochondrial DNA polymorphism as tool for identification of enological strains of Saccharomyces cerevisiae. Appl. Microbiol. Biotechnol. 32: 568-571.
28. Woese, C.R., Gutell, R., Gupta R., and Noller, H.F. 1983. Detailed analysis of the higher-order structure of he 16S-like ribosomal ribonucleic acids. Microbiol. Rev. 47: 621-669.