Early evolution of eukaryotes inferred from genome data

International Congress Series

Volumn 1246, Issue C, 2002, Pages 209-215

  Arisue, Nobuko ^a,b   Hashimoto, Tetsuo ^a,b   Hasegawa, Masami ^a,b  

^a INSTITUTE OF STATISTICAL MATHEMATICS   (Japan)

^b GRADUATE UNIVERSITY FOR ADVANCED STUDIES   (Japan)

Author keywords

Early evolution; Maximum likelihood method; Phylogenetic relationship

Indexed keywords

EID: 30344432197     PISSN: 05315131     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0531-5131(02)01148-2     Document Type: Article

References (17)

1. Leipe, D.D., Gunderson, J.H., Nerad, T.A., Sogin, M.L., Small subunit ribosomal RNA+ of Hexamita inflata and the quest of the first branch in the eukaryotic tree. Mol. Biochem. Parasitol. 59 (1993), 41–48.
2. Hashimoto, T., Hasegawa, M., Origin and early evolution of eukaryotes inferred from the amino acid sequences of translation elongation factors 1□/Tu and 2/G. Adv. Biophys. 32 (1996), 73–120.
3. Edlind, T.D., Li, J., Visvesvara, G.S., Vodkin, M.H., McLaughlin, G.L., Katiyar, S.K., Phylogenetic analysis of □-tubulin sequences from amitochondrial protozoa. Mol. Phylogenet. Evol. 5 (1996), 359–367.
4. Keeling, P.J., Doolittle, W.F., Alpha-tubulin from early-diverging eukaryotic lineages and the evolution of the tubulin family. Mol. Biol. Evol. 13 (1996), 1297–1305.
5. Hirt, R.P., Logsdon, J.M. Jr., Healy, B., Dorey, M.W., Doolittle, W.F., Embley, T.M., Microsporidia are related to fungi: evidence from the largest subunit of RNA polymerase II and other proteins. Proc. Natl. Acad. Sci. U. S. A. 96 (1999), 580–585.
6. Adachi, J., Hasegawa, M., Computer Science Monographs, No. 28, MOLPHY Version 2.3: Programs for Molecular Phylogenetics Based on Maximum Likelihood. 1996, The Institute of Statistical Mathematics, Tokyo.
7. Yang, Z., PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13 (1997), 555–556.
8. Kishino, H., Hasegawa, M., Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J. Mol. Evol. 29 (1989), 170–179.
9. Shimodaira, H., Hasegawa, M., Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16 (1999), 1114–1116.
10. Shimodaira, H., Hasegawa, M., CONSEL: a program for assessing the confidence of phylogenetic tree selection. Bioinformatics 17 (2001), 1246–1247.
11. Baldauf, S.L., Roger, A.J., Wenk-Siefert, I., Doolittle, W.F., A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290 (2000), 972–977.
12. Kuma, K., Nikoh, N., Iwabe, N., Miyata, T., Phylogenetic position of Dictyostelium inferred from multiple protein data sets. J. Mol. Evol. 41 (1995), 238–246.
13. Cavalier-Smith, T., A revised six-kingdom system of life. Biol. Rev. 73 (1998), 203–266.
14. Bapteste, E., Brinkmann, H., Lee, J.A., Moore, D.V., Sensen, C.W., Gordon, P., Duruflé, L., Gaasterland, T., Lopez, P., Müller, M., Philippe, H., The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba. Proc. Natl. Acad. Sci. U. S. A. 99 (2002), 1414–1419.
15. Moreira, D., Le Guyader, H., Phillippe, H., The origin of red algae and the evolution of chloroplasts. Nature 405 (2000), 65–72.
16. Arisue, N., Hashimoto, T., Yoshikawa, H., Nakamura, Y., Nakamura, G., Nakamura, F., Yano, T., Hasegawa, M., Phylogenetic position of Blastocystis hominis and of stramenopiles inferred from multiple molecular sequence data. J. Eukaryot. Microbiol. 49 (2002), 42–53.
17. Arisue, N., Hashimoto, T., Lee, J.A., Moore, D.V., Gordon, P., Sensen, C.W., Gaasterland, T., Hasegawa, M., Müller, M., The phylogenetic position of the pelobiont Mastigamoeba balamuthi based on sequences of rDNA and translation elongation factors EF-1□ and EF-2. J. Eukaryot. Microbiol. 49 (2002), 1–10.