Molecular phylogeny of Phalaenopsis Blume (Orchidaceae) based on the internal transcribed spacer of the nuclear ribosomal DNA

Plant Systematics and Evolution

Volumn 256, Issue 1-4, 2005, Pages 1-16

  Tsai, C C ^a,b   Huang, S C ^c   Chou, C H ^b,d  

^a FISHERIES RESEARCH INSTITUTE   (Taiwan)

^b NATIONAL PINGTUNG UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Taiwan)

^c TAIWAN AGRICULTURAL RESEARCH INSTITUTE   (Taiwan)

^d NATIONAL SUN YAT SEN UNIVERSITY   (Taiwan)

Author keywords

Internal transcribed spacer; Phalaenopsis; Phylogeny; rDNA

Indexed keywords

DORITIS; ORCHIDACEAE; PHALAENOPSIS;

EID: 29844432707     PISSN: 03782697     EISSN: 16156110     Source Type: Journal    
DOI: 10.1007/s00606-005-0356-y     Document Type: Article

References (35)

1. M Aoyama K Kojima M Kobayashi 1994 Morphology of microspores in Phalaenopsis hybrids Kinki Chugoku Agr. Res 88 49 53
2. B. G Baldwin 1992 Phylogenetic utility of the internal transcribed sequences of nuclear ribosomal DNA in plants: an example from the Compositae Molec. Phylogenet. Evol 1 3 16
3. B. G Baldwin 1993 Molecular phylogenetics of Calycadenia (Compositae) based on ITS sequences of nuclear ribosomal DNA: chromosomal and morphological evolution reexamined Amer. J. Bot 80 222 238
4. B. G Baldwin M. J Sanderson J. M Porter M. F Wojciechowski C.S. Campbell M. J Donoghue 1995 The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny Ann. Missouri Bot. Gard 82 247 277
5. R. J Bayer D. E Soltis P. S Soltis 1996 Phylogenetic inferences in Antennaria (Asteraceae: Gnaphalieae: Cassiniinae) based on sequences from nuclear ribosomal DNA internal transcribed spacers (ITS) Amer. J. Bot 83 516 527
6. W. H Chen Y. M Fu R. M Hsieh W. T Tsai M. S Chyou C. C Wu Y. S Lin 1995 Application of DNA amplification fingerprinting in the breeding of Phalaenopsis orchid M Terzi R Cella A Falavigna Current issues in plant molecular and cellular biology Kluwer Academic Publishers Dordrecht, Boston, and London 341 346
7. E. A Christenson 2001 Phalaenopsis Timber Press Portland, OR
8. A. V Cox A. M Pridgeon V. A Albert M. W Chase 1997 Phylogenetics of the slipper orchids (Cypripedioideae, Orchidaceae): nuclear rDNA ITS sequences Pl. Syst. Evol 208 197 223
9. J Doyle J Doyle 1987 A rapid DNA isolation procedure for small quantities of fresh leaf tissue Phytochem. Bull 19 11 15
10. J Felsenstein 1985 Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 783 791
11. W. M Fitch 1971 Towards defining the course of evolution: minimum change for a specific tree topology Syst. Zool 20 406 416
12. T. A Hall 1999 BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT Nucl. Acids Symp. Ser 41 95 98
13. D. M Hillis J. J Bull 1993 An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis Syst. Biol 42 182 192
14. Kao Y. H. (2001) Phylogeny of Phalaenopsis species based on 5S rDNA intergenic sequences. Institute of Botany National Taiwan University, Taipei, Taiwan, Master's thesis. (in Chinese).
15. M Kimura 1980 A simple method for estimating evolutionary rates of base substitution through comparative studies of nucleotide sequences Molec. Evol 16 111 120
16. Kiss T, Kis M, Solymosy F (1989a) Nucleotide sequence of a 25S rRNA gene from tomato. Nucl. Acids Res 17:796.
17. Kiss T, Szkukalek A, Solymosy F (1989b) Nucleotide sequence of a 17S (18S) rRNA gene from tomato. Nucl. Acids Res. 17:2127.
18. Kumar S., Tamura K., Jakobsen I. B., Nei M. (2001) MEGA 2.1: Molecular Evolutionary Genetics Analysis software. Arizona State University, Tempe, AZ.
19. A Rzhetsky M Nei 1992 Statistical properties of the ordinary least-squares, generalized least-squares, and minimum-evolution methods of phylogenetic inference J. Molec. Evol 35 367 375
20. N Saitou M Nei 1987 The Neighbor-joining method: a new method for reconstructing phylogenetic trees Molec. Biol. Evol 4 406 425
21. G Seidenfaden 1988a Doritis Opera Bot 95 31 34
22. G Seidenfaden 1988b Kingidium Opera Bot 95 182 189
23. P. S Shim 1982 A new generic classification in the Phalaenopsis complex (Orchidaceae) Malayan Nat. J 36 1 28
24. K Shindo H Kamemoto 1963 Karyotype analysis of some species of Phalaenopsis Cytologia 28 390 398
25. Y Suh L. B Thien H. E Reeve E. A Zimmer 1993 Molecular evolution and phylogenetic implications of internal sequences of nuclear ribosomal DNA in Winteraceae Amer. J. Bot 80 1042 1055
26. Y Sun D. Z Skinner G. H Liang S. H Hulbert 1994 Phylogenetic analysis of Sorghum and related taxa using internal transcribed spacers of nuclear ribosomal DNA Theor. Appl. Genet 89 26 32
27. H. R Sweet 1968 Revision of the genus Phalaenopsis, pt. 2 Amer. Orchid Soc. Bull 37 1089 1104
28. Sweet H. R. (1969) Revision of the genus Phalaenopsis, pts. 3 and 4. Amer. Orchid Soc. Bull. 38: 33-43, 225-239.
29. H. R Sweet 1980 The genus Phalaenopsis. The Orchid Digest Pomona CA
30. F Takaiwa K Oono M Sugiura 1984 The complete nucleotide sequence of a rice 17S rRNA gene Nucl. Acids Res 12 5441 5448
31. F Takaiwa K Oono M Sugiura 1985 The complete nucleotide sequence of a rice 25S rRNA gene Gene 37 255 289
32. R Tanaka K Kamemoto 1984 Chromosomes in orchids: counting and numbers J Arditti Orchid biology: reviews and perspectives Vol. III Comstock Publishing, Cornell University Press Ithaca, N.Y
33. C. C Tsai S. C Huang 2001 The internal transcribed spacer of ribosomal DNA as a marker for identifying species and hybrids of the Oncidinae J. Hort. Sci. Biotech 76 674 680
34. C. G. G. J Van Steenis 1950 The delimitation of Malaysia and its main plant geographical divisions Flora Malesiana. Noordhoff-Kolff (Jakarta) 1 1 70 75
35. J. W Woodard 1951 Some chromosome numbers in Phalaenopsis Amer. Orchid Soc. Bull 20 356 358