Atopostipes suicloacale gen. nov., sp. nov., isolated from an underground swine manure storage pit

Anaerobe

Volumn 10, Issue 3, 2004, Pages 191-195

  Cotta, Michael A ^a   Whitehead, Terence R ^a   Collins, Matthew D ^b   Lawson, Paul A ^b  

^a NATIONAL CENTER FOR AGRICULTURAL UTILIZATION RESEARCH   (United States)

^b UNIVERSITY OF READING   (United Kingdom)

Author keywords

16S rRNA; Atopostipes suicloacale sp. nov.; Manure; Swine; Taxonomy

Indexed keywords

RIBOSOME RNA;

ALKALIBACTERIUM OLIVOAPOVLITICUS; ALLOFUSTIS SEMINIS; ALLOIOCCOCCUS OTITIS; ANAEROBIC BACTERIUM; ARTICLE; ATOPOSTIPES SUICLOACALE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; DOLOSIGRANULUM PIGRUM; EUBACTERIUM; FECES MICROFLORA; GENE SEQUENCE; GRAM POSITIVE BACTERIUM; MANURE; MOLECULAR GENETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SWINE;

ALKALIBACTERIUM OLIVAPOVLITICUS; ALLOFUSTIS SEMINIS; BACTERIA (MICROORGANISMS); DOLOSIGRANULUM PIGRUM; EUBACTERIUM LIMOSUM; POSIBACTERIA; SUS SCROFA; UNCULTURED ORGANISM;

EID: 2942707955     PISSN: 10759964     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.anaerobe.2004.04.001     Document Type: Article

References (16)

1. Whitehead T.R., Cotta M.A. Characterisation and comparison of microbial populations in swine faeces and manure storage pits by 16S rDNA gene sequence analysis. Anaerobe. 7:2000;181-187
2. Cotta M.A., Whitehead T.R. Isolation, characterization, and comparison of bacteria from swine feces and manure storage pits. Environ Microbiol. 5:2003;737-745
3. Miller D.N. Accumulation and composition of odorous compounds in feedlot soils under aerobic, fermentative, anaerobic respiratory conditions. J Anim Sci. 79:2001;2503-2512
4. Saito H., Miura H. Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochem Biophys Acta. 22:1963;619-629
5. Johnson J.L. Similarity analysis of DNAs. Gerhardt P., Murray R.G.E., Wood W.A., Kreig N.R. Methods for general and molecular bacteriology. 1994;656-682 ASM, Washington, DC
6. Pearson W.R., Lipman D.J. Rapid and sensitive protein similarity searches. Science. 227:1985;1435-1441
7. Rasmussen S.W. DNATools, a software package for DNA sequence analysis. 1995;Carlsberg Laboratory, Copenhagen
8. Nicholas K.B., Nicholas H.B. Jr., Deerfield D.W. II GeneDoc. analysis and visualization of genetic variation EMBNEW News. 4:1997;14
9. Saitou N., Nei M. The neighbour-joining method. a new method for reconstructing phylogenetic trees Mol Biol Evol. 4:1987;406-425
10. Page R.D.M. TREEVIEW. an application to display phylogenetic trees on personal computer Comp Appl Biosci. 12:1996;357-358
11. Schleifer K.H., Kandler O. Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev. 36:1972;407-477
12. Paster B.J., Boches S.K., Galvin J.L., Ericson R.E., Lau C.N., Levanos V.A., Sahasrabudhe A., Dewhirst F.E. Bacterial diversity in human subgingival plaque. J Bacteriol. 183:2001;3770-3783
13. Ntougias S., Russell N.J. Alkalibacterium olivoapovliticus gen. nov., sp. nov., a new obligately alkaliphilic bacterium isolated from edible-olive wash waters. Int J Syst Evol Microbiol. 51:2001;1161-1170
14. Aguirre M., Morrison D., Cookson B.D., Gay F.W., Collins M.D. Phenotypic and phylogenetic characterisation of some Gemella-like organisms from human infections. description of Dolosigranulum pigrum gen. nov., sp. nov J Appl Bacteriol. 75:1993;608-612
15. Aguirre M., Collins M.D. Phylogenetic analysis of Alloiococcus otitis gen. nov., sp. nov., an organism from human middle ear fluid. Int J Syst Bacteriol. 42:1992;79-83
16. Collins M.D., Higgins R., Messier S., Fortin M., Hutson R.A., Lawson P.A., Falsen E. Allofustis seminis gen. nov., sp. nov., a novel Gram-positive, catalase-negative, rod-shaped bacterium from pig semen. Int J Syst Evol Microbiol. 53:2003;811-814