In situ measurement of Fe(III) reduction activity of Geobacter pelophilus by simultaneous in situ RT-PCR and XPS analysis

FEMS Microbiology Ecology

Volumn 49, Issue 1, 2004, Pages 163-169

  Neal, Andrew L ^a   Clough, Lani K ^b   Perkins, Todd D ^b   Little, Brenda J ^c   Magnuson, Timothy S ^b  

^a UNIVERSITY OF GEORGIA   (United States)

^b Nucl Eng Idaho State University   (United States)

^c NAVAL RESEARCH LABORATORY   (United States)

Author keywords

Gene detection; Geobacteraceae; Iron respiring bacterium; Mineral transformation; Surface attachment

Indexed keywords

CYTOCHROME C; FERRIC ION; FLUORESCENT DYE;

ANAEROBIC BACTERIUM; BACTERIAL COLONIZATION; CONFERENCE PAPER; GENE EXPRESSION; GEOBACTER PELOPHILUS; NONHUMAN; PRIORITY JOURNAL; REDUCTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SOLID; X RAY PHOTOELECTRON SPECTROSCOPY;

BACTERIAL PROTEINS; CYTOCHROME C GROUP; FERRIC COMPOUNDS; GENE EXPRESSION REGULATION, BACTERIAL; GEOBACTER; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, BACTERIAL; SPECTROMETRY, X-RAY EMISSION;

BACTERIA (MICROORGANISMS); GEOBACTER; GEOBACTER PELOPHILUS; GEOBACTER SULFURREDUCENS; GEOBACTERACEAE;

EID: 2942679132     PISSN: 01686496     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.femsec.2004.03.014     Document Type: Conference Paper

References (33)

1. Lovley D.R. Fe(III) and Mn(IV) reduction. Lovely D.R. Environmental Metal-Microbe Interactions. 2000;ASM Press, Washington DC
2. Vargas M., Kashefi K., Blunt-Harris E.L., Lovley D.R. Microbiological evidence for Fe(III) reduction on early Earth. Nature. 395:1998;65-67
3. Bowman J.P., McCammon S.A., Nichols D.S., Skerratt J.H., Rea S.M., Nichols P.D., McMeekin T.A. Shewanella gelidimarina sp. nov., Shewanella frigidimarina sp. nov., novel Antarctic species with the ability to produce eicosapentaenoic acid (20:5 omega 3) and grow anaerobically by dissimilatory Fe(III) reduction. Int. J. Syst. Bacteriol. 47:1997;1040-1047
4. 3+-reducing bacterium Geobacter sulfurreducens. FEMS Microbiol. Lett. 185:2000;205-211
5. Magnuson T.S., Isoyama N., Hodges-Myerson A.L., Davidson G., Maroney M.J., Geesey G.G., Lovley D.R. Isolation, characterization and gene sequence analysis of a membrane-associated 89 kDa Fe(III) reducing cytochrome c from Geobacter sulfurreducens. Biochem. J. 359:2001;147-152
6. Myers J.M., Myers C.R. Role for outer membrane cytochromes OmcA and OmcB of Shewanella putrefaciens MR-1 in reduction of manganese dioxide. Appl. Environ. Microbiol. 67:2001;260-269
7. Newman D.K., Kolter R. A role for excreted quinones in extracellular electron transfer. Nature. 405:2000;94-97
8. Junta-Rosso J.L., Hochella M.F. The chemistry of hematite (0. 0 1) surfaces Geochim. Cosmochim. Acta. 60:1996;305-314
9. Lloyd J.R., Sole V.A., Praagh C.V., Lovley D.R. Van Direct and Fe(II)-mediated reduction of technetium by Fe(III)-reducing bacteria. Appl. Environ. Microbiol. 66:2000;3479-3743
10. 3 of Desulfovibrio vulgaris Appl. Environ. Microbiol. 59:1993;3572-3576
11. 3 cytochrome Appl. Environ. Microbiol. 60:1994;726-728
12. Fredrickson J.K., Zachara J.M., Kennedy D., Duff M.C., Gorby Y.A. Reduction of U(VI) in goethite (-FeOOH) suspensions by a dissimilatory metal-reducing bacterium. Geochim. Cosmochim. Acta. 64:2000;3085-3098
13. Dong H., Fredrickson J.K., Kennedy D.W., Zachara J.M., Kukkadapu R.K., Onstott T.C. Mineral transformation associated with the microbial reduction of magnetite. Chem. Geol. 169:2000;299-318
14. Neal A.L., Techkarnjanaruk S., Dohnalkova A., McCready D., Peyton B.M., Geesey G.G. Iron sulfides and sulfur species produced at hematite surfaces in the presence of sulfate-reducing bacteria. Geochim. Cosmochim. Acta. 65:2001;223-235
15. Childers S.E., Ciufo S., Lovley D.R. Geobacter metallireducens accesses insoluble Fe(III) oxide by chemotaxis. Nature. 416:2002;767-769
16. Caccavo F. Jr. Protein-mediated adhesion of the dissimilatory Fe(III)-reducing bacterium Shewanella alga BrY to hydrous ferric oxide. Appl. Environ. Microbiol. 65:1999;5017-5022
17. Das A., Caccavo F. Jr. Dissimilatory Fe(III) oxide reduction by Shewanella alga BrY requires adhesion. Curr. Microbiol. 40:2000;344-347
18. Das A., Caccavo F. Jr. Adhesion of the dissimilatory Fe(III)-reducing bacterium Shewanella alga BrY to crystalline Fe(III) oxides. Curr. Microbiol. 42:2001;151-154
19. Straub K.L., Hanzlik M., Buchholz-Cleven B.E. The use of biologically produced ferrihydrite for the isolation of novel iron-reducing bacteria. Syst. Appl. Microbiol. 21:1998;442-449
20. Straub K.L., Buchholz-Cleven B.E. Geobacter bremensis sp. nov., Geobacter pelophilus sp. nov., two dissimilatory ferric-iron-reducing bacteria. Int. J. Syst. Evol. Microbiol. 51:2001;1805-1808
21. Geesey G.G., Neal A.L., Suci P.A., Peyton B.M. A review of spectroscopic methods for characterizing microbial transformation of minerals. J. Microbiol. Meth. 51:2002;125-139
22. Ausabel F.M., Brent R., Kingston R.E., Moore D.D., Seidman J.G., Smith J.A., Struhl K. Current Protocols in Molecular Biology. 1997;John Wiley and Sons Inc. New York
23. Leang C., Coppi M.V., Lovley D.R. OmcB, a c-type polyheme cytochrome involved, in Fe(III) reduction in Geobacter sulfurreducens. J. Bacteriol. 185:2003;2096-2103
24. Hames B.D., Rickwood D. Gel electrophoresis of proteins: a practical approach. 1989;IRL Press, Washington DC
25. Thomas P.E., Ryan D., Levin W. An improved staining procedure for the detection of the peroxidase activity of cytochrome P450 on sodium dodecyl sulfate polyacrylamide gels. Anal. Biochem. 75:1976;168-176
26. Shirley D.A. High-resolution X-ray photoemission spectrum of the valence bands of gold. Phys. Rev. B. 5:1972;4709-4714
27. Swift P. Adventitious carbon - the panacea for energy referencing? Surf. Interface Anal. 4:1982;47-51
28. Gupta R.P., Sen S.K. Calculation of multiplet structure of core p-vacancy levels II. Phys. Rev. B. 12:1975;15-19
29. Pratt A.R., Muir I.J., Nesbitt H.W. X-ray photoelectron and Auger electron spectroscopic studies of pyrrhotite and mechanism of air oxidation. Geochim. Cosmochim. Acta. 58:1994;827-841
30. McIntyre N.S., Zetaurk D.G. X-ray photoelectron spectroscopic studies of iron oxides. Anal. Chem. 49:1977;1521-1529
31. Herbert R.B., Benner S.G., Pratt A.R., Blowes D.W. Surface chemistry and morphology of poorly crystalline iron sulfides precipitated in media containing sulfate-reducing bacteria. Chem. Geol. 144:1998;87-97
32. Magnuson, T.S., Neal, A.L. and Geesey, G.G. (2002). Surface-associated growth, mineral transformations, and gene expression by Geobacter sulfurreducens on solid-phase mineral surfaces. Microb. Ecol., (in press)
33. Myers C.R., Myers J.M. Cell surface exposure of the outer membrane cytochromes of Shewanella oniedensis MR-1. Lett. Appl. Microbiol. 37:2003;254-258