Genome-wide transcriptional responses to a lipid hydroperoxide: Adaptation occurs without induction of oxidant defenses

Free Radical Biology and Medicine

Volumn 37, Issue 1, 2004, Pages 23-35

  Alic, Nazif ^a   Felder, Thomas ^b   Temple, Mark D ^a   Gloeckner, Christian ^a,c   Higgins, Vincent J ^a,d   Briza, Peter ^b   Dawes, Ian W ^a  

^a UNIVERSITY OF NEW SOUTH WALES   (Australia)

^b UNIVERSITY OF SALZBURG   (Austria)

^c UNIVERSITY OF BONN   (Germany)

^d UNIVERSITY OF WESTERN SYDNEY   (Australia)

Author keywords

Adaptive response; Free radicals; Linoleic acid hydroperoxide; Lipid peroxidation; LoaOOH; OD; Optical density; Oxidative stress; PDR; PDRE; PKA; Pleiotropic drug resistance; Pleiotropic drug resistance element; Transcription

Indexed keywords

ARTICLE; CONTROLLED STUDY; DETOXIFICATION; GENE FUNCTION; GENETIC ANALYSIS; GENETIC TRANSCRIPTION; GENOME; LIPID PEROXIDATION; NONHUMAN; PRIORITY JOURNAL; PROTEIN SYNTHESIS; SACCHAROMYCES CEREVISIAE;

FUNGAL PROTEINS; GENE EXPRESSION REGULATION, FUNGAL; GENOME, FUNGAL; LIPID PEROXIDATION; LIPID PEROXIDES; REACTIVE OXYGEN SPECIES; RNA, MESSENGER; SACCHAROMYCES CEREVISIAE; TRANSCRIPTION, GENETIC;

SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 2942597762     PISSN: 08915849     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.freeradbiomed.2004.04.014     Document Type: Article

References (39)

1. Girotti A.W. Lipid hydroperoxide generation, turnover, and effector action in biological systems. J. Lipid Res. 39:1998;1529-1542
2. Gutteridge J.M., Halliwell B. The measurement and mechanism of lipid peroxidation in biological systems. Trends Biochem. Sci. 15:1990;129-135
3. Gutteridge J.M. Lipid peroxidation and antioxidants as biomarkers of tissue damage. Clin. Chem. 41:1995;1819-1828
4. Lusis A.J. Atherosclerosis. Nature. 407:2000;233-241
5. Picklo M.J., Montine T.J., Amarnath V., Neely M.D. Carbonyl toxicology and Alzheimer's disease. Toxicol. Appl. Pharmacol. 184:2002;187-197
6. Jenner P. Oxidative stress in Parkinson's disease. Ann. Neurol. 53:2003;S26-S36. discussion S36-28
7. Avery A.M., Avery S.V. Saccharomyces cerevisiae expresses three phospholipid hydroperoxide glutathione peroxidases. J. Biol. Chem. 276:2001;33730-33735
8. Turton H.E., Dawes I.W., Grant C.M. Saccharomyces cerevisiae exhibits a yAP-1-mediated adaptive response to malondialdehyde. J. Bacteriol. 179:1997;1096-1101
9. Wonisch W., Hayn M., Schaur R.J., Tatzber F., Kranner I., Grill D., Winkler R., Bilinski T., Kohlwein S.D., Esterbauer H. Increased stress parameter synthesis in the yeast Saccharomyces cerevisiae after treatment with 4-hydroxy-2-nonenal. FEBS Lett. 405:1997;11-15
10. Evans M.V., Turton H.E., Grant C.M., Dawes I.W. Toxicity of linoleic acid hydroperoxide to Saccharomyces cerevisiae: involvement of a respiration-related process for maximal sensitivity and adaptive response. J. Bacteriol. 180:1998;483-490
11. Alic N., Higgins V.J., Dawes I.W. Identification of a Saccharomyces cerevisiae gene that is required for G1 arrest in response to the lipid oxidation product linoleic acid hydroperoxide. Mol. Biol. Cell. 12:2001;1801-1810
12. Finkel T., Holbrook N.J. Oxidants, oxidative stress and the biology of ageing. Nature. 408:2000;239-247
13. 2 stimulon in Saccharomyces cerevisiae. J. Biol. Chem. 273:1998;22480-22489
14. Gasch A.P., Spellman P.T., Kao C.M., Carmel-Harel O., Eisen M.B., Storz G., Botstein D., Brown P.O. Genomic expression programs in the response of yeast cells to environmental changes. Mol. Biol. Cell. 11:2000;4241-4257
15. Causton H.C., Ren B., Koh S.S., Harbison C.T., Kanin E., Jennings E.G., Lee T.I., True H.L., Lander E.S., Young R.A. Remodeling of yeast genome expression in response to environmental changes. Mol. Biol. Cell. 12:2001;323-337
16. Flattery-O'Brien J., Collinson L.P., Dawes I.W. Saccharomyces cerevisiae has an inducible response to menadione which differs from that to hydrogen peroxide. J. Gen. Microbiol. 139:1993;501-507
17. Brachmann C.B., Davies A., Cost G.J., Caputo E., Li J., Hieter P., Boeke J.D. Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast. 14:1998;115-132
18. Alic N., Higgins V.J., Pichova A., Breitenbach M., Dawes I.W. Lipid hydroperoxides activate the mitogen-activated protein kinase Mpk1p in Saccharomyces cerevisiae. J. Biol. Chem. 278:2003;41849-41855
19. DeRisi J., van den Hazel B., Marc P., Balzi E., Brown P., Jacq C., Goffeau A. Genome microarray analysis of transcriptional activation in multidrug resistance yeast mutants. FEBS Lett. 470:2000;156-160
20. Hughes T.R., Mao M., Jones A.R., Burchard J., Marton M.J., Shannon K.W., Lefkowitz S.M., Ziman M., Schelter J.M., Meyer M.R., Kobayashi S., Davis C., Dai H., He Y.D., Stephaniants S.B., Cavet G., Walker W.L., West A., Coffey E., Shoemaker D.D., Stoughton R., Blanchard A.P., Friend S.H., Linsley P.S. Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer. Nat. Biotechnol. 19:2001;342-347
21. Robinson M.D., Grigull J., Mohammad N., Hughes T.R. FunSpec: a web-based cluster interpreter for yeast. BMC Bioinformatics. 3:2002;35
22. Sellin S., Holmquist B., Mannervik B., Vallee B.L. Oxidation and reduction of 4-hydroxyalkenals catalyzed by isozymes of human alcohol dehydrogenase. Biochemistry. 30:1991;2514-2518
23. Oberschall A., Deak M., Torok K., Sass L., Vass I., Kovacs I., Feher A., Dudits D., Horvath G.V. A novel aldose/aldehyde reductase protects transgenic plants against lipid peroxidation under chemical and drought stresses. Plant J. 24:2000;437-446
24. Maillet I., Buhler J.M., Sentenac A., Labarre J. Rpb4p is necessary for RNA polymerase II activity at high temperature. J. Biol. Chem. 274:1999;22586-22590
25. Davies J.M., Lowry C.V., Davies K.J. Transient adaptation to oxidative stress in yeast. Arch. Biochem. Biophys. 317:1995;1-6
26. Choi J.H., Lou W., Vancura A. A novel membrane-bound glutathione S-transferase functions in the stationary phase of the yeast Saccharomyces cerevisiae. J. Biol. Chem. 273:1998;29915-29922
27. Gustin M.C., Albertyn J., Alexander M., Davenport K. MAP kinase pathways in the yeast Saccharomyces cerevisiae. Microbiol. Mol. Biol. Rev. 62:1998;1264-1300
28. Devaux F., Marc P., Bouchoux C., Delaveau T., Hikkel I., Potier M.C., Jacq C. An artificial transcription activator mimics the genome-wide properties of the yeast Pdr1 transcription factor. EMBO Rep. 2:2001;493-498
29. Grant C.M. Role of the glutathione/glutaredoxin and thioredoxin systems in yeast growth and response to stress conditions. Mol. Microbiol. 39:2001;533-541
30. Pocernich C.B., Cardin A.L., Racine C.L., Lauderback C.M., Butterfield D.A. Glutathione elevation and its protective role in acrolein-induced protein damage in synaptosomal membranes: relevance to brain lipid peroxidation in neurodegenerative disease. Neurochem. Int. 39:2001;141-149
31. Balzi E., Goffeau A. Genetics and biochemistry of yeast multidrug resistance. Biochim. Biophys. Acta. 1187:1994;152-162
32. Bauer B.E., Wolfger H., Kuchler K. Inventory and function of yeast ABC proteins: about sex, stress, pleiotropic drug and heavy metal resistance. Biochim. Biophys. Acta. 1461:1999;217-236
33. Cheng J.Z., Sharma R., Yang Y., Singhal S.S., Sharma A., Saini M.K., Singh S.V., Zimniak P., Awasthi S., Awasthi Y.C. Accelerated metabolism and exclusion of 4-hydroxynonenal through induction of RLIP76 and hGST5.8 is an early adaptive response of cells to heat and oxidative stress. J. Biol. Chem. 276:2001;41213-41223
34. van den Hazel H.B., Pichler H., do Valle Matta M.A., Leitner E., Goffeau A., Daum G. PDR16 and PDR17, two homologous genes of Saccharomyces cerevisiae, affect lipid biosynthesis and resistance to multiple drugs. J. Biol. Chem. 274:1999;1934-1941
35. Devaux F., Carvajal E., Moye-Rowley S., Jacq C. Genome-wide studies on the nuclear PDR3-controlled response to mitochondrial dysfunction in yeast. FEBS Lett. 515:2002;25-28
36. Traven A., Wong J.M., Xu D., Sopta M., Ingles C.J. Interorganellar communication. Altered nuclear gene expression profiles in a yeast mitochondrial DNA mutant. J. Biol. Chem. 276:2001;4020-4027
37. Cowart L.A., Okamoto Y., Pinto F.R., Gandy J.L., Almeida J.S., Hannun Y.A. Roles for sphingolipid biosynthesis in mediation of specific programs of the heat stress response determined through gene expression profiling. J. Biol. Chem. 278:2003;30328-30338
38. Thevelein J.M., de Winde J.H. Novel sensing mechanisms and targets for the cAMP-protein kinase A pathway in the yeast Saccharomyces cerevisiae. Mol. Microbiol. 33:1999;904-918
39. Smith A., Ward M.P., Garrett S. Yeast PKA represses Msn2p/Msn4p-dependent gene expression to regulate growth, stress response and glycogen accumulation. EMBO J. 17:1998;3556-3564