MicroCore: Mapping genome expression to cell pathways and networks

Comparative and Functional Genomics

Volumn 5, Issue 1, 2004, Pages 75-78

  Patel, Manish ^a   Nagl, Sylvia ^a,b  

^a ROYAL FREE AND UNIVERSITY COLLEGE MEDICAL SCHOOL   (United Kingdom)

^b UNIVERSITY COLLEGE LONDON   (United Kingdom)

Author keywords

Bioinformatics; Functional genomics data visualization; Genome expression; Pathway analysis

Indexed keywords

DNA;

ARTICLE; CLUSTER ANALYSIS; COMPUTER GRAPHICS; COMPUTER NETWORK; COMPUTER PROGRAM; CONTROLLED STUDY; DNA MICROARRAY; GENE EXPRESSION; GENE MAPPING; GENOMICS; INFORMATION PROCESSING; ONLINE SYSTEM; PRIORITY JOURNAL; PROTEOMICS; SIGNAL TRANSDUCTION; STATISTICAL ANALYSIS; SYSTEM ANALYSIS;

EID: 2942588807     PISSN: 15316912     EISSN: None     Source Type: Journal    
DOI: 10.1002/cfg.362     Document Type: Article

References (15)

1. Boguski MS, McIntosh MW. 2003. Biomedical informatics for proteomics. Nature 422: 233-237.
2. CMAP; http://cmap.nci.nih.gov
3. Dudoit S, Gentleman RC, Quackenbush J. 2003. Open source software for the analysis of microarray data. Biotechniques March (suppl): 45-51.
4. Dahlquist KD, Salomonis N, Vranizan K, Lawlor SC, Conklin BR. 2002. GenMAPP, a new tool for viewing and analysing microarray data on biological pathways. Nature Genet 31: 19-20.
5. Eisen MB, Spellman PT, Brown PO, Botstein D. 1998. Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 95: 14 863-14 868.
6. GOLD database; http://wit.integratedgenomics.com/GOLD/
7. Hucka M, Finney A, Sauro HM, et al. 2003. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics 19: 524-531.
8. KEGG; http://www.genome.ad.jp/kegg
9. Lipshutz RJ, Fodor SP, Gingeras TR, Lockhart DJ. 1999. High density synthetic oligonucleotide arrays. Nature Genet 21: (suppl): 20-24.
10. Ross DT, Scherf U, Eisen MB, et al. 2000. Systematic variation in gene expression patterns in human cancer cell lines. Nature Genet 24: 227-235.
11. Scherf U, Ross DT, Waltham M, el al. 2000. A gene expression database for the molecular pharmacology of cancer. Nature Genet 24: 236-244.
12. Slonim DK. 2002. From patterns to pathways: gene expression data analysis comes of age. Nature Genet 32: (suppl): 502-508.
13. Sturn A, Quackenbush J, Trajnoski Z. 2002. Genesis: cluster analysis of microarray data. Bioinformatics 18: 207-208.
14. Sun Website - http://java.sun.com
15. Valafar F. 2002. Pattern recognition techniques in microarray data analysis: a survey. Ann N Y Acad Sci 980: 41-64.