A bayesian hierarchical model for the analysis of affymetrix arrays

Annals of the New York Academy of Sciences

Volumn 1020, Issue , 2004, Pages 41-48

  Tadesse, Mahlet G ^a   Ibrahim, Joseph G ^b  

^a TEXAS A AND M UNIVERSITY   (United States)

^b University of North Carolina at Chapel Hill   (United States)

Author keywords

Analysis of variance; Censored data; DNA microarray; Gene expression; Gibbs sampling; Hierarchical priors

Indexed keywords

ANALYSIS OF VARIANCE; BAYES THEOREM; CANCER RESEARCH; CONFERENCE PAPER; CORRELATION ANALYSIS; DATA ANALYSIS; DNA MICROARRAY; EXPERIMENTAL TEST; GENE EXPRESSION SYSTEM; GENE LOCATION; GENETIC ANALYSIS; GENETIC TRANSCRIPTION; HUMAN; MOLECULAR MODEL; NUCLEOTIDE SEQUENCE; TECHNIQUE;

EID: 2942550775     PISSN: 00778923     EISSN: None     Source Type: Book Series    
DOI: 10.1196/annals.1310.006     Document Type: Conference Paper

References (12)

1. TADESSE, M.G., J. IBRAHIM & G. MUTTER. 2003. Identification of differentially expressed genes in high-density oligonucleotide arrays accounting for the quantification limits of the technology. Biometrics 59: 542-554.
2. GOLUB, T.R., D. SLONIM, P. TAMAYO et al. 1999. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 286: 531-537.
3. BOLSTAD, B.M., R. IRIZARRY, M. ASTRAND & T. SPEED. 2003. A comparison of normalization methods for high density oligonucleotide array data based on bias and variance. Bioinformatics 19: 185-193.
4. NEWTON, M.A., C. KENDZIORSKI, C. RICHMOND et al. 2001. On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data. J. Comput. Biol. 8: 37-52.
5. KERR, M. & G. CHURCHILL. 2000. Experimental design for gene expression microarrays. Biostatistics 2: 183-201.
6. BOX, G.E.P. & D. COX. 1964. An Analysis of Transformations. J. R. Stat. Soc. B26: 211-252.
7. GELFAND, A. & S. SAHU. 1999. Identifiability, improper priors, and Gibbs sampling for generalized linear models. J. Am. Stat. Assoc. 94: 247-253.
8. GILKS, W. & P. WILD. 1992. Adaptive rejection sampling for Gibbs sampling. Appl. Stat. 41: 337-348.
9. MUTTER, G., J. BAAK, J. FITZGERALD et al. 2001. Global expression changes of constitutive and hormonally regulated genes during endometrial neoplastic transformation. Gynecol. Oncol. 83: 177-185.
10. ZIMMER, M., R. MEDCALF, T. FINK et al. 1992. Three human elastase-like genes coordinately expressed in the myelomonocyte lineage are organized as a single genetic locus on 19pter. Proc. Natl. Acad. Sci. USA 89: 8215-8219.
11. PLOWMAN, G.D., J. GREEN, V. MCDONALD et al. 1990. The amphiregulin gene encodes a novel epidermal growth factor-related protein with tumor inhibitory activity. Mol. Cell. Biol. 10: 1969-1981.
12. VIRGILIO, L., M. NARDUCCI, M. ISOBE et al. 1994. Identification of the TCL1 gene involved in T-cell malignancies. Proc. Natl. Acad. Sci. USA 91: 12530-12534.