메뉴 건너뛰기




Volumn 2003-January, Issue , 2003, Pages 53-70

Hybrid Protein Model (HPM) : A method for building a library of overlapping local structural prototypes. Sensitivity study and improvements of the training

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; COMPLEX NETWORKS; CONFORMAL MAPPING; FORECASTING; SELF ORGANIZING MAPS; SIGNAL PROCESSING;

EID: 2942530913     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/NNSP.2003.1318004     Document Type: Conference Paper
Times cited : (10)

References (23)
  • 1
    • 0035812694 scopus 로고    scopus 로고
    • Protein structure prediction and structural genomics
    • D. Baker and A. Sali, "Protein structure prediction and structural genomics," Science, vol. 294, pp. 93-96, 2001.
    • (2001) Science , vol.294 , pp. 93-96
    • Baker, D.1    Sali, A.2
  • 4
    • 0032555696 scopus 로고    scopus 로고
    • Prediction of local structure in proteins using a library of sequence-structure motif
    • C. Bystroff and D. Baker, "Prediction of local structure in proteins using a library of sequence-structure motif," J Mol Biol, vol. 281, pp. 565-577, 1998.
    • (1998) J Mol Biol , vol.281 , pp. 565-577
    • Bystroff, C.1    Baker, D.2
  • 5
    • 0033405214 scopus 로고    scopus 로고
    • Hidden Markov Model approach for identifying the modular framework of the protein backbone
    • A. Camproux, P. Tuffery, J. Chevrolat, J. Boisvieux and S. Hazout, "Hidden Markov Model approach for identifying the modular framework of the protein backbone," Protein Eng, vol. 12, no. 12, pp. 1063-1073, 1999.
    • (1999) Protein Eng , vol.12 , Issue.12 , pp. 1063-1073
    • Camproux, A.1    Tuffery, P.2    Chevrolat, J.3    Boisvieux, J.4    Hazout, S.5
  • 7
    • 0034669774 scopus 로고    scopus 로고
    • Bayesian probabilistic approach for prediction backbone structures in terms of protein blocks
    • A. de Brevern, C. Etchebest and S. Hazout, "Bayesian probabilistic approach for prediction backbone structures in terms of protein blocks," Proteins, vol. 41, no. 3, pp. 271-287, 2000.
    • (2000) Proteins , vol.41 , Issue.3 , pp. 271-287
    • De Brevern, A.1    Etchebest, C.2    Hazout, S.3
  • 8
    • 0035636385 scopus 로고    scopus 로고
    • Compacting local protein folds with a hybrid protein
    • A. de Brevern and S. Hazout, "Compacting local protein folds with a Hybrid Protein," Theoretical Chemistry Accounts, vol. 106(1/2), pp. 3647, 2001.
    • (2001) Theoretical Chemistry Accounts , vol.106 , Issue.1-2 , pp. 3647
    • De Brevern, A.1    Hazout, S.2
  • 9
    • 0037433050 scopus 로고    scopus 로고
    • Hybrid Protein Model' for optimally defining 3D protein structure fragments
    • A. de Brevern and S. Hazout, '"Hybrid Protein Model' for optimally defining 3D protein structure fragments," Bioinformatics, vol. 19, pp. 345-353, 2003.
    • (2003) Bioinformatics , vol.19 , pp. 345-353
    • De Brevern, A.1    Hazout, S.2
  • 10
    • 0036893073 scopus 로고    scopus 로고
    • Extensíon of a local back-bone description using a structural alphabet. A new approach to the seqnence-structure relationship
    • A. de Brevern, H. Valadie, H. S and C. Etchebest, "Extensíon of a local back-bone description using a structural alphabet. A new approach to the seqnence-structure relationship," Protein Science, vol. 11, pp. 2871-2886, 2002.
    • (2002) Protein Science , vol.11 , pp. 2871-2886
    • De Brevern, A.1    Valadie, H.S.H.2    Etchebest, C.3
  • 11
    • 0031052447 scopus 로고    scopus 로고
    • Patterns, structures, and amino acid frequencies in structural building blocks, a protein secondary structure classification scheme
    • J. Fetrow, M. Palnmbo and G. Berg, "Patterns, structures, and amino acid frequencies in structural building blocks, a protein secondary structure classification scheme," Proteins, vol. 27, pp. 249-271, 1997.
    • (1997) Proteins , vol.27 , pp. 249-271
    • Fetrow, J.1    Palnmbo, M.2    Berg, G.3
  • 12
    • 0033152756 scopus 로고    scopus 로고
    • Estimating the total number of protein folds
    • S. Govindarajan, R. Recabarren and R. Goldstein, "Estimating the total number of protein folds," Proteins, vol. 35, pp. 408-414, 1999.
    • (1999) Proteins , vol.35 , pp. 408-414
    • Govindarajan, S.1    Recabarren, R.2    Goldstein, R.3
  • 13
    • 0029878720 scopus 로고    scopus 로고
    • VMD - Visual molecular dynamics
    • W. Humphrey, A. Dalke and K. Schulten, "VMD - Visual Molecular Dynamics," J Mol Graph, vol. 14: Pp. 33-38, 1996.
    • (1996) J Mol Graph , vol.14 , pp. 33-38
    • Humphrey, W.1    Dalke, A.2    Schulten, K.3
  • 14
    • 0020068152 scopus 로고
    • Self-organized formation of topologically correct feature maps
    • T. Kohonen, "Self-organized formation of topologically correct feature maps," Biol Cyber, vol. 43, pp. 5W9, 1982.
    • (1982) Biol Cyber , vol.43 , pp. 5W9
    • Kohonen, T.1
  • 16
    • 0001927585 scopus 로고
    • On information and sufficiency
    • S. Kullback and R. Leibler, "On information and sufficiency," Ann Math Stat, vol. 22, pp. 79-86, 1951.
    • (1951) Ann Math Stat , vol.22 , pp. 79-86
    • Kullback, S.1    Leibler, R.2
  • 17
    • 0035172128 scopus 로고    scopus 로고
    • PDB-REPRDB: A database of representative protein chains from the Protein Data Bank (PDB)
    • T. Noguchi, H. Matsuda and Y. Akiyama, "PDB-REPRDB: A database of representative protein chains from the Protein Data Bank (PDB)," Nucl Acids Res, vol. 29, no. 1, pp. 219-220, 2001.
    • (2001) Nucl Acids Res , vol.29 , Issue.1 , pp. 219-220
    • Noguchi, T.1    Matsuda, H.2    Akiyama, Y.3
  • 18
    • 0036568279 scopus 로고    scopus 로고
    • Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles
    • G. Pollastri, D. Przybylski, B. Rust and P. Baldi, "Improving the Prediction of Protein Secondary Structure in Three and Eight Classes Using Recurrent Neural Networks and Profiles," Proteins, vol. 47, pp. 228-235, 2002.
    • (2002) Proteins , vol.47 , pp. 228-235
    • Pollastri, G.1    Przybylski, D.2    Rust, B.3    Baldi, P.4
  • 19
    • 0024610919 scopus 로고
    • A tutorial on hidden markov models and selected applications in speech recognition
    • L. Rabiner, "A tutorial on Hidden Markov Models and selected applications in speech recognition," Proc. of the IEEE, vol. 77, pp. 257-285, 1989.
    • (1989) Proc. of the IEEE , vol.77 , pp. 257-285
    • Rabiner, L.1
  • 20
    • 0025326949 scopus 로고
    • Automatic definition of reccurent local structure motifs in proteins
    • M. Rooman, J. Rodriguez and S. Wodak, "Automatic definition of reccurent local structure motifs in proteins," J Mol Biol, vol. 213, pp. 327-336, 1990.
    • (1990) J Mol Biol , vol.213 , pp. 327-336
    • Rooman, M.1    Rodriguez, J.2    Wodak, S.3
  • 21
    • 0029860175 scopus 로고    scopus 로고
    • Local structural motifs of protein backbones are classified by self-organizing neural networks
    • J. Schuchhardt, G. Schneider, J. Reichelt, D. Schomburg and P. Wrede, "Local structural motifs of protein backbones are classified by self-organizing neural networks," Protein Eng, vol. 9, no. 10, pp. 833-842, 1996.
    • (1996) Protein Eng , vol.9 , Issue.10 , pp. 833-842
    • Schuchhardt, J.1    Schneider, G.2    Reichelt, J.3    Schomburg, D.4    Wrede, P.5
  • 22
    • 0024395940 scopus 로고
    • A 3D building blocks approach to analyzing and predicting structure of proteins
    • .R. Unger, D. Harel, S. Wherland and J. Sussman, "A 3D building blocks approach to analyzing and predicting structure of proteins," Proteins, vol. 5, pp. 355-373, 1989.
    • (1989) Proteins , vol.5 , pp. 355-373
    • Unger, R.1    Harel, D.2    Wherland, S.3    Sussman, J.4
  • 23
    • 0035703315 scopus 로고    scopus 로고
    • Application of PROSPECT in CASPI: Characterizing protein structures with new folds
    • D. Xu, O. Crawford, P. LoCascio and Y. Xu, "Application of PROSPECT in CASPI: Characterizing protein structures with new folds: Proteins, vol. S5, pp. 140-148, 2001.
    • (2001) Proteins , vol.S5 , pp. 140-148
    • Xu, D.1    Crawford, O.2    LoCascio, P.3    Xu, Y.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.