Structural characterization of genomes by large scale sequence-structure threading: Application of reliability analysis in structural genomics

BMC Bioinformatics

Volumn 5, Issue , 2004, Pages

  Cherkasov, Artem ^a   Ho Sui, Shannan J ^b   Brunham, Robert C ^a   Jones, Steven J M ^c  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^b SIMON FRASER UNIVERSITY   (Canada)

^c BRITISH COLUMBIA CANCER AGENCY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

BUILDING CONSTRUCTION; CONVENTIONAL POWER; ENGINEERING ANALYSIS; EVOLUTIONARY HISTORY; RELIABILITY , MAINTAINABILITY AND SAFETIES; RELIABILITY PARAMETERS; STRUCTURAL CHARACTERIZATION; STRUCTURAL GENOMICS;

GENES; PROTEIN FOLDING; RELIABILITY ANALYSIS;

WEIBULL DISTRIBUTION;

ACCURACY; ANALYTICAL PARAMETERS; ARTICLE; BIOENGINEERING; CONTROLLED STUDY; GENE DUPLICATION; GENE SEQUENCE; GENE STRUCTURE; GENETIC ANALYSIS; GENETIC DIFFERENCE; MICROORGANISM; MOLECULAR EVOLUTION; NONHUMAN; PREDICTION; PROTEIN ANALYSIS; PROTEIN FOLDING; PROTEIN FUNCTION; PROTEIN LOCALIZATION; RELIABILITY; STRUCTURAL GENOMICS; THEORETICAL MODEL; BIOLOGY; COMPARATIVE STUDY; GENETIC DATABASE; GENOME; GENOMICS; PROCEDURES; STATISTICAL MODEL; STATISTICS AND NUMERICAL DATA;

COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; GENOME; GENOMICS; LIKELIHOOD FUNCTIONS; MODELS, STATISTICAL; PROTEIN FOLDING;

EID: 2942516223     PISSN: 14712105     EISSN: None     Source Type: Journal    
DOI: 10.1186/1471-2105-5-101     Document Type: Article

References (17)

1. Barabasi A-L: Linked: The New Science of Networks Perseus Publ; Cambridge, Mass; 2002.
2. Pareto V: The New Theories of Economics. Journal of Political Economy 1897, 5:485-502.
3. Luscombe NM, Qian J, Zhang Z, Johnson T, Gerstein M: The dominance of the population by a selected few: power-law behavior applied to a wide variety of genomic properties. Genome Biology 2002, 3(8):0040.1-0040.7.
4. Koonin EV, Wolf YI, Karev GP: The structure of the protein universe and genome evolution. Nature 2002, 420:218-223.
5. Qian J, Luscombe NM, Gerstein M: Protein family and fold occurrence in genomes: power-law behaviour and evolutionary model. J Mol Biol 2001, 313:673-81.
6. Rzhetski A, Gomez SM: Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome. Bioinformatics 2001, 17:988-996.
7. Yanai I, Camacho CJ, DeLisi C: Predictions of gene family distributions in microbial genomes: evolution by gene duplication and modification. Phys Rev Lett 2000, 85:2641-2644.
8. Orengo CA, Michie AD, Jones S, Jones DT, Swindells MB, Thornton JM: CATH-A Hierarchic Classification of Protein Domain Structures. Structure 1997, 5:1093-1108.
9. Cherkasov A, Jones SJM: Structural characterization of genomes by threading. BMC Bioinformatics 2004, 5:37.
10. Barabasi A-L, Albert R: Emergence of scaling in random networks. Science 1999, 286:509-512.
11. Coles S: An Introduction to Statistical Modeling of Extreme Values London: Springer-Verlag; 2001.
12. Cox DR, Oakes D: Analysis of Survival Data London, New York: Chapman and Hall; 1984.
13. Wu S-J: Estimation of the parameters of the Weibull distribution with progressively censored data. J Japan Stat Soc 2002, 32:155-163.
14. Romeu JL: Empirical assessment of Weibull distribution. Selected Topics in Assurance Related Technologies 2003, 10: -6.
15. Gumbel EJ: Statistical Theory of Extreme Values and Some Practical Applications,. in National Bureau of Standards Applied Mathematics Series Volume 33. Washington, D.C: U.S. Government Printing Office; 1954.
16. The C. elegans Sequencing Consortium: Genome sequence of the nematode C. elegans: a platform for investigating biology. Science 1998, 282:2012-2018.
17. Jones DT, Taylor WR, Thornton JM: A new approach to protein fold recognition. Nature 1992, 358:86-89.