Usefulness of microchip electrophoresis for reliable analyses of nonstandard DNA samples and subsequent on-chip enzymatic digestion

European Journal of Biochemistry

Volumn 271, Issue 11, 2004, Pages 2241-2247

  Kataoka, Masatoshi ^a   Inoue, Sonoko ^a   Kajimoto, Kazuaki ^a   Sinohara, Yasou ^a,b   Baba, Yoshinobu ^a,c  

^a UNIVERSITY OF TOKUSHIMA   (Japan)

^b AIST Shikoku   (Japan)

^c JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

Electrophoresis; Microchip; Plasmid; Quantification; Sizing

Indexed keywords

DNA FRAGMENT; ENDONUCLEASE; PLASMID DNA;

ACCURACY; ARTICLE; CAPILLARY ELECTROPHORESIS; CONCENTRATION (PARAMETERS); ELECTROPHORESIS; FEASIBILITY STUDY; PRIORITY JOURNAL; SEQUENTIAL ANALYSIS;

DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA; ELECTROPHORESIS, CAPILLARY; PLASMIDS; REPRODUCIBILITY OF RESULTS;

EID: 2942512908     PISSN: 00142956     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1432-1033.2004.04161.x     Document Type: Article

References (25)

1. Watson, J.D., Gilman, M., Witkowski, J. & Zoller, M. (1992) Recombinant DNA, 2nd edn. Scientific Academic Book, New York, NY.
2. Sambrook, J. & Russell, D.W. (2001) Molecular Cloning: a Laboratory Manual, 3rd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
3. Woolley, A.T. & Mathies, R.A. (1994) Ultra-high-speed fragment separations using microfabricated capillary array electrophoresis chips. Proc. Natl Acad. Sci. USA 91, 11348-11352.
4. Woolley, A.T. & Mathies, R.A. (1995) Ultra-high-speed DNA sequencing using capillary electrophoresis chips. Anal. Chem. 67, 3676-3680.
5. Woolley, A.T., Hadley, D., Landre, P., deMello, A.J., Mathies, R.A. & Northrup, M.A. (1996) Functional integration of PCR amplification and capillary electrophoresis in a microfabricated DNA analysis device. Anal. Chem. 68, 4081-4086.
6. Effenhauser, C.S., Bruin, G.L. & Paulus, A. (1997) Integrated chip-based capillary electrophoresis. Electrophoresis 18, 2203-2213.
7. McCormick, R.M., Nelson, R.J., Alonso-Amigo, M.G., Benvegnu, D.J. & Hooper, H.H. (1997) Microchannel electrophoresis separations of DNA in injection-molded plastic substrates. Anal. Chem. 69, 2626-2630.
8. Woolley, A.T., Lao, K., Glazer, A.N. & Mathies, R.A. (1998) Capillary electrophoresis chips with integrated electrochemical detection. Anal. Chem. 70, 684-688.
9. Zhang, L., Dang, F. & Baba, Y. (2003) Microchip electrophoresis-based separation of DNA. J. Pharm. Biomed. Anal. 30, 1645-1654.
10. Mitchelson, K.R. (2001) The application of capillary electrophoresis for DNA polymorphism analysis. Methods Mol. Biol. 162, 3-26.
11. Mueller, O., Hahnenberger, K., Dittmann, M., Yee, H., Dubrow, R., Nagle, R. & Ilsley, D. (2000) A microfluidic system for high-speed reproducible DNA sizing and quantitation. Electrophoresis 21, 128-134.
12. Panaro, N.J., Yuen, P.K., Sakazume, T., Fortina, P., Krika, L.J. & Wilding, P. (2000) Evaluation of DNA fragment sizing and quantification by the Agilent 2100 bioanalyzer. Clin. Chem. 46, 1851-1853.
13. Tian, H., Jaquins-Gerstl, A., Munro, N., Trucco, M., Brody, L.C. & Landers, J.P. (2000) Single-strand conformation polymorphism analysis by capillary and microchip electrophoresis: a fast, simple method for detection of common mutations in BRCA1 and BRCA2. Genomics 63, 25-34.
14. Gottwald, E., Muller, O. & Polten, A. (2001) Semiquantitative reserve transcription-polymerase chain reaction with the Agilent 2100 bioanalyzer. Electrophoresis 22, 4016-4022.
15. Nachamkin, I., Panaro, N.J., Li, M., Ung, H., Yuen, P.K., Kricka, L.J. & Wilding, P. (2001) Agilent 2100 bioanalyzer for restriction fragment length polymorphism analysis of the Campyrobacter jejuni flagelin gene. J. Clin. Microbiol. 39, 754-757.
16. Jabsini, M., Zhang, L., Dang, F., Xu, F., Almofli, M.R., Ewiss, A.A., Lee, J., Nakahori, Y. & Baba, Y. (2002) Analysis of DNA polymorphism on the human Y-chromosome by microchip electrophoresis. Electrophoresis 23, 1537-1542.
17. Lu, C., Tso, D., Yang, T., Jong, Y. & Wei, Y. (2002) Detection of DNA mutations associated with mitochondrial disease by Agilent 2100 bioanalyzer. Clin. Chim. Acta. 318, 97-105.
18. Zhang, L., Dang, F. & Baba, Y. (2002) Detection of DNA mutations with mitochondrial disease by Agilent 2100 bioanalyzer. Electrophoresis 23, 2341-2346.
19. Xu, F., Jabasini, M. & Baba, Y. (2002) DNA separation by microchip electrophoresis using low-viscosity hydroxypropylmethylcellulose-50 solutions enhanced by polyhydroxy compounds. Electrophoresis 23, 3608-3614.
20. Ding, L., Williams, K., Ausserer, W., Bousse, L. & Dubrow, R. (2003) Analysis of plasmid samples on a microchip. Anal. Biochem. 316, 92-102.
21. 2+ necessary for specific cleavage of the terminal phosphoryl group of ATP? Biophys. Chem. 27, 251-254.
22. Wang, J. (2002) On-chip enzymatic assays. Electrophoresis 23, 713-718.
23. Guttman, A., Ronai, Z., Barta, C., Sasvari-Szekely, M., Wang, J. & Briggs, S.P. (2002) Membrane-mediated ultrafast restriction digestion and subsequent rapid gel microchip electrophoresis of DNA. Electrophoresis 23, 1524-1530.
24. Roddy, E.S., Price, M. & Ewing, A.G. (2003) Continuous monitoring of a restriction enzyme digest of DNA on a microchip with automated capillary sample introduction. Anal. Chem. 75, 3704-3711.
25. Park, S., Cho, S.I.I., Kim, M., Kim, Y. & Kim, B. (2003) Integration of on-column immobilized enzyme reactor in microchip electrophoresis. Electrophoresis 24, 200-206.