Automatic discovery and inferencing of complex bioinformatics Web interfaces

World Wide Web

Volumn 8, Issue 4 SPEC. ISS., 2005, Pages 463-493

  Ngu, Anne H H ^a   Rocco, Daniel ^b   Critchlow, Terence ^c   Buttler, David ^c  

^a Texas State University   (United States)

^b UNIVERSITY OF WEST GEORGIA   (United States)

^c LAWRENCE LIVERMORE NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 29344444733     PISSN: 1386145X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11280-005-0509-5     Document Type: Article

References (27)

1. S. F. Altschul, W. Gish, W. Miller, E. W. Meyers, and D. J. Lipman, "Basic local alignment search tool," Journal of Molecular Biology 215(3), 1990, 403-410.
2. A. Arasu and H. Garcia-Molina, "Extracting structured data from web pages," in Proceedings of ACM/SIGMOD Annual Conference on Management of Data, 2003, pp. 337-348.
3. Y. Arens, C. Knoblock, and W. Shen, "Query reformulation for dynamic information integration," International Journal of Intelligent and Cooperative Information Systems 6(2), 1996, 99-130.
4. R. Bayardo et al., "InfoSleuth: Agent-based semantic integration of information in open and dynamic environments," in Proc. ACM SIGMOD Int'l Conference on Management of Data, 1997.
5. S. Brin and L. Page, "The anatomy of a large-scale hypertextual Web search engine," Computer Networks and ISDN Systems 30(1-7), 1998, 107-117.
6. S. Chawathe, H. Garcia-Molina, J. Hammer, K. Ireland, Y. Papakonstantinou, J. D. Ullman, and J. Widom, "The TSIMMIS project: Integration of heterogeneous information sources," in 16th Meeting of the Information Processing Society of Japan, Tokyo, Japan, 1994, pp. 7-18.
7. S. B. Davidson, G. C. Overton, V. Tannen, and L. Wong, "BioKleisli: A digital library for biomedical researchers," Int. J. on Digital Libraries, 1(1), 1997, 36-53.
8. DBCAT, The Public Catalog of Databases, http://www.infobiogen.fr/ services/dbcat/, 2002.
9. R. B. Doorenbos, O. Etzioni, and D. S. Weld, "A scalable comparison-shopping agent for the world-wide web," in W. L. Johnson and B. Hayes-Roth (eds), Proceedings of the First International Conference on Autonomous Agents (Agents'97), pp. 39-48, ACM Press, Marina del Rey, CA, USA, 1997.
10. B. Eckman, Z. Lacroix, and L. Raschid, "Optimized seamless integration of biomolecular data," in IEEE International Conference on Bioinformatics and Biomedical Egineering, 2001, pp. 23-32.
11. D. C. Fallside, "XML Schema Part 0: Primer," Technical report, World Wide Web Consortium, 2001. http://www.w3.org/TRyxnilschema-0/
12. W. Gish. BLAST, 2002. http://blast.wustl.edu/
13. R. Gold. HttpUnit. 2003. http://httpunit.sourceforge.net.
14. L. Haas, P. Schwarz, P. Kodali, E. Kotlar, J. Rice, and W. Swope, "Discoverylink: A system for integrating life sciences data," IBM Systems Journa 40(2), 2001.
15. A. Heydon and M. Najork, "Mercator: A scalable, extensible web crawler," World Wide Web 2(4), 1999, 219-229.
16. C. A. Knoblock, S. Minton, J. L. Ambite, N. Ashish, I. Mulsea, A. G. Philpot, and S. Tejada. "The ariadne approach to web-based information integration," International Journal of Cooperative Information Systems (UCIS) 10(1-2), 2001, 145-169.
17. A. Y. Levy, A. Rajaraman, and J. J. Ordille, "Querying heterogeneous information sources using source descriptions," in Proceedings of the Twenty-second International Conference on Very Large Databases, pp. 251-262, Bombay, India, 1996. VLDB Endowment, Saratoga, CA.
18. L. Liu, C. Pu, and W. Han, "XWrap: An XML-enabled wrapper construction system for web information sources," Proceedings of the International Conference on Data Engineering, 2000.
19. R. Miller and K. Bharat, "SPHINX: A framework for creating personal, site-specific web crawlers," in Proceedings of the Seventh International World Wide Web Conference, 1998.
20. G. Modica, A. Gal, and H. M. Jamil, "The use of machine-generated ontologies in dynamic information seeking," in 9th International Conference on Cooperative Information Systems, CoopIS2001, 2001, pp. 433-448.
21. National Center for Biotechnology Information. GenBank Statistics, 2003. http://www.ncbi.nlm.nih.gov/Genbank/genbankstats.html
22. NIAS DNA Bank. Growth of daily updates of DNA Sequence Databases, 2003. http://www.dna.affrc.go.jp/htdocs/growth/D-daily.html
23. NLM/NTH, National Center for Biotechnology Information, 2002. http://www.ncbi.nih.gov,/ 2002.
24. D. Rocco and T. Critchlow, "Automatic discovery and classification of bioinformatics web sources," Bioinformatics, Oxford University Press, 19(15), 2003, 1927-1933
25. P. Srinivasan, J. Mitchell, O. Bodenreider, G. Pant, and F. Menczer, "Web crawling agents for retrieving biomedical information," in Proceedings of the International Workshop on Agents in Bioinformatics (NETTAB-02), 2002.
26. G., Mecca V. Crescenzi, and P. Merialdo, "Towards automatic data extraction from large web sites," in Proceedings of the 27th International Conference on Very Large Data bases, September 2001.
27. V. Zadorozhny, L. Raschid, M.-E. Vidal, T. Urhan, and L. Bright, "Efficient evaluation of queries in a mediator for websources," in Proceedings of ACM/SIGMOD Annual Conference on Management of Data, 2002.