-
2
-
-
0034487378
-
Agrobacterium and plant genes involved in T-DNA transfer and integration
-
S.B. Gelvin Agrobacterium and plant genes involved in T-DNA transfer and integration Annu. Rev. Plant Physiol. Plant Mol. Biol. 51 2000 223 256
-
(2000)
Annu. Rev. Plant Physiol. Plant Mol. Biol.
, vol.51
, pp. 223-256
-
-
Gelvin, S.B.1
-
3
-
-
0037337257
-
Agrobacterium-mediated plant transformation: The biology behind the Gene-Jockeying tool
-
S.B. Gelvin Agrobacterium-mediated plant transformation: the biology behind the Gene-Jockeying tool Microbiol. Mol. Biol. Rev. 67 2003 16 37
-
(2003)
Microbiol. Mol. Biol. Rev.
, vol.67
, pp. 16-37
-
-
Gelvin, S.B.1
-
4
-
-
0027140849
-
The cell biology of plant transformation: Culture state, problems, prospects and the implications for the plant breeding
-
M. DeBlock The cell biology of plant transformation: culture state, problems, prospects and the implications for the plant breeding Euphytica 71 1993 1 14
-
(1993)
Euphytica
, vol.71
, pp. 1-14
-
-
Deblock, M.1
-
5
-
-
0007349661
-
Development and optimization of microprojectile systems for plant genetic transformation
-
R.G. Birch, and T. Franks Development and optimization of microprojectile systems for plant genetic transformation Aus. J. Plant Physiol. 18 1991 453 469
-
(1991)
Aus. J. Plant Physiol.
, vol.18
, pp. 453-469
-
-
Birch, R.G.1
Franks, T.2
-
6
-
-
0141907758
-
Distribution and characterization of over 1000 T-DNA tags in rice genome
-
S. Chen, W. Jin, M. Wang, F. Zhang, J. Zhou, Q. Jia, Y. Wu, F. Liu, and P. Wu Distribution and characterization of over 1000 T-DNA tags in rice genome Plant J. 36 2003 105 113
-
(2003)
Plant J.
, vol.36
, pp. 105-113
-
-
Chen, S.1
Jin, W.2
Wang, M.3
Zhang, F.4
Zhou, J.5
Jia, Q.6
Wu, Y.7
Liu, F.8
Wu, P.9
-
7
-
-
1642465435
-
An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics
-
M.G. Rosso, Y. Li, N. Strizhov, B. Reiss, K. Dekker, and B. Weisshaar An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics Plant Mol. Biol. 53 2003 247 259
-
(2003)
Plant Mol. Biol.
, vol.53
, pp. 247-259
-
-
Rosso, M.G.1
Li, Y.2
Strizhov, N.3
Reiss, B.4
Dekker, K.5
Weisshaar, B.6
-
8
-
-
3843065475
-
High throughput T-DNA insertion mutagenesis in rice: A first step towards in silico reverse genetics
-
C. Sallaud, C. Gay, P. Larmande, M. Bès, P. Piffanelli, B. Piégu, G. Droc, F. Regad, E. Bourgeois, D. Meynard, C. Périn, X. Sabau, A. Ghesquière, J.C. Glaszmann, M. Delseny, and E. Guiderdoni High throughput T-DNA insertion mutagenesis in rice: a first step towards in silico reverse genetics Plant J. 39 2004 450 464
-
(2004)
Plant J.
, vol.39
, pp. 450-464
-
-
Sallaud, C.1
Gay, C.2
Larmande, P.3
Bès, M.4
Piffanelli, P.5
Piégu, B.6
Droc, G.7
Regad, F.8
Bourgeois, E.9
Meynard, D.10
Périn, C.11
Sabau, X.12
Ghesquière, A.13
Glaszmann, J.C.14
Delseny, M.15
Guiderdoni, E.16
-
9
-
-
0030157430
-
The integration of T-DNA into plant genomes
-
B. Tinland The integration of T-DNA into plant genomes Trends Plant Sci. 1 1996 178 184
-
(1996)
Trends Plant Sci.
, vol.1
, pp. 178-184
-
-
Tinland, B.1
-
10
-
-
0032419337
-
Direct repeats of T-DNA integrated in tobacco chromosome: Characterization of junction regions
-
L. Krizkova, and M. Hrouda Direct repeats of T-DNA integrated in tobacco chromosome: characterization of junction regions Plant J. 16 1998 673 680
-
(1998)
Plant J.
, vol.16
, pp. 673-680
-
-
Krizkova, L.1
Hrouda, M.2
-
11
-
-
0036958494
-
T-DNA integration into the Arabidopsis genome depends on sequences of pre-insertion sites
-
V. Brunaud, S. Balzergue, B. Dubreucq, S. Aubourg, F. Samson, S. Chauvin, N. Bechtold, C. Cruaud, R. DeRose, G. Pelletier, L. Lepiniec, M. Caboche, and A. Lecharny T-DNA integration into the Arabidopsis genome depends on sequences of pre-insertion sites EMBO Rep. 3 2002 1152 1157
-
(2002)
EMBO Rep.
, vol.3
, pp. 1152-1157
-
-
Brunaud, V.1
Balzergue, S.2
Dubreucq, B.3
Aubourg, S.4
Samson, F.5
Chauvin, S.6
Bechtold, N.7
Cruaud, C.8
Derose, R.9
Pelletier, G.10
Lepiniec, L.11
Caboche, M.12
Lecharny, A.13
-
12
-
-
0023194815
-
T-DNA structure and gene expression in petunia plants transformed by Agrobacterium tumefaciens C58 derivatives
-
J.D.G. Jones, D.E. Gilbert, K.L. Grady, and R.A. Jorgensen T-DNA structure and gene expression in petunia plants transformed by Agrobacterium tumefaciens C58 derivatives Mol. Gen. Genet. 207 1987 478 485
-
(1987)
Mol. Gen. Genet.
, vol.207
, pp. 478-485
-
-
Jones, J.D.G.1
Gilbert, D.E.2
Grady, K.L.3
Jorgensen, R.A.4
-
13
-
-
0023193729
-
T-DNA is organized predominantly in inverted repeat structures in plants transformed with Agrobacterium tumefaciens C58 derivatives
-
R. Jorgensen, C. Snyder, and J.D.G. Jones T-DNA is organized predominantly in inverted repeat structures in plants transformed with Agrobacterium tumefaciens C58 derivatives Mol. Gen. Genet. 207 1987 471 477
-
(1987)
Mol. Gen. Genet.
, vol.207
, pp. 471-477
-
-
Jorgensen, R.1
Snyder, C.2
Jones, J.D.G.3
-
14
-
-
0027689368
-
Single-copy T-DNA insertions in Arabidopsis are the predominant form of integration in root-derived transgenics, whereas multiple insertions are found in leaf discs
-
C. Grevelding, V. Fantes, E. Kemper, J. Schell, and R. Masterson Single-copy T-DNA insertions in Arabidopsis are the predominant form of integration in root-derived transgenics, whereas multiple insertions are found in leaf discs Plant Mol. Biol. 23 1993 847 860
-
(1993)
Plant Mol. Biol.
, vol.23
, pp. 847-860
-
-
Grevelding, C.1
Fantes, V.2
Kemper, E.3
Schell, J.4
Masterson, R.5
-
15
-
-
0038736849
-
Molecular structure and regulatory potential of a T-DNA integration site in petunia
-
A. Dietz-Pfeilstetter, N. Arndt, V. Kay, and J. Bode Molecular structure and regulatory potential of a T-DNA integration site in petunia Transgenic Res. 12 2003 83 99
-
(2003)
Transgenic Res.
, vol.12
, pp. 83-99
-
-
Dietz-Pfeilstetter, A.1
Arndt, N.2
Kay, V.3
Bode, J.4
-
16
-
-
4544249998
-
A large-scale study of rice plants transformed with different T-DNAs provides new insights into locus composition and T-DNA linkage configurations
-
A.S. Afolabi, B. Worland, J.W. Snape, and P. Vain A large-scale study of rice plants transformed with different T-DNAs provides new insights into locus composition and T-DNA linkage configurations Theor. Appl. Genet. 109 2004 815 826
-
(2004)
Theor. Appl. Genet.
, vol.109
, pp. 815-826
-
-
Afolabi, A.S.1
Worland, B.2
Snape, J.W.3
Vain, P.4
-
17
-
-
0000699440
-
Integration of Agrobacterium tumefaciens transfer DNA (T-DNA) involves rearrangements of target plant DNA sequences
-
G. Gheysen, M. van Montagu, and P. Zambryski Integration of Agrobacterium tumefaciens transfer DNA (T-DNA) involves rearrangements of target plant DNA sequences Proc. Natl. Acad. Sci. U.S.A. 84 1987 6169 6173
-
(1987)
Proc. Natl. Acad. Sci. U.S.A.
, vol.84
, pp. 6169-6173
-
-
Gheysen, G.1
Van Montagu, M.2
Zambryski, P.3
-
18
-
-
0026096528
-
T-DNA integration: A mode of illegitimate recombination in plants
-
R. Mayerhofer, Z. Koncz-Kalman, C. Nawrath, G. Bakkeren, A. Crameri, K. Angelis, G.P. Redei, J. Schell, B. Hohn, and C. Koncz T-DNA integration: a mode of illegitimate recombination in plants EMBO J. 10 1991 697 704
-
(1991)
EMBO J.
, vol.10
, pp. 697-704
-
-
Mayerhofer, R.1
Koncz-Kalman, Z.2
Nawrath, C.3
Bakkeren, G.4
Crameri, A.5
Angelis, K.6
Redei, G.P.7
Schell, J.8
Hohn, B.9
Koncz, C.10
-
19
-
-
0031105481
-
The structures of integration sites in transgenic rice
-
M. Takano, H. Egawa, J.E. Ikeda, and K. Wakasa The structures of integration sites in transgenic rice Plant J. 11 1997 353 361
-
(1997)
Plant J.
, vol.11
, pp. 353-361
-
-
Takano, M.1
Egawa, H.2
Ikeda, J.E.3
Wakasa, K.4
-
20
-
-
0344721491
-
Palindromic sequences and A+T-rich DNA elements promote illegitimate recombination in Nicotiana tabacum
-
A.E. Müller, Y. Kamisugi, R. Grünberg, R. Niedenhof, R.J. Hörold, and P. Meyer Palindromic sequences and A+T-rich DNA elements promote illegitimate recombination in Nicotiana tabacum J. Mol. Biol. 291 1999 29 46
-
(1999)
J. Mol. Biol.
, vol.291
, pp. 29-46
-
-
Müller, A.E.1
Kamisugi, Y.2
Grünberg, R.3
Niedenhof, R.4
Hörold, R.J.5
Meyer, P.6
-
21
-
-
0042768158
-
Genome-wide insertional mutagenesis of Arabidopsis thaliana
-
J.M. Alonso, A.N. Stepanova, T.J. Leisse, C.J. Kim, H. Chen, P. Shinn, D.K. Stevenson, J. Zimmerman, P. Barajas, and R. Cheuk Genome-wide insertional mutagenesis of Arabidopsis thaliana Science 301 2003 653 657
-
(2003)
Science
, vol.301
, pp. 653-657
-
-
Alonso, J.M.1
Stepanova, A.N.2
Leisse, T.J.3
Kim, C.J.4
Chen, H.5
Shinn, P.6
Stevenson, D.K.7
Zimmerman, J.8
Barajas, P.9
Cheuk, R.10
-
22
-
-
0026073574
-
Illegitimate recombination in plants: A model for T-DNA integration
-
G. Gheysen, R. Villarroel, and M. van Montagu Illegitimate recombination in plants: a model for T-DNA integration Genes Dev. 5 1991 287 297
-
(1991)
Genes Dev.
, vol.5
, pp. 287-297
-
-
Gheysen, G.1
Villarroel, R.2
Van Montagu, M.3
-
23
-
-
0033907671
-
The transfer of DNA from Agrobacterium tumefaciens into plants: A feast of fundamental insights
-
J. Zupan, T.R. Muth, O. Draper, and P. Zambryski The transfer of DNA from Agrobacterium tumefaciens into plants: a feast of fundamental insights Plant J. 23 2000 11 28
-
(2000)
Plant J.
, vol.23
, pp. 11-28
-
-
Zupan, J.1
Muth, T.R.2
Draper, O.3
Zambryski, P.4
-
24
-
-
29244480658
-
Genetically modified turfgrass: A critical review
-
Research Signpost Kerala, India
-
D. Fu, N.A. Tisserat, Y. Xiao, and G.H. Liang Genetically modified turfgrass: a critical review Recent Research Developments in Genetics and Breeding vol. 1 2004 Research Signpost Kerala, India pp. 317-347
-
(2004)
Recent Research Developments in Genetics and Breeding
, vol.1
-
-
Fu, D.1
Tisserat, N.A.2
Xiao, Y.3
Liang, G.H.4
-
25
-
-
0027570124
-
Use of bar as a selectable marker gene and for the production of herbicide-resistant rice plants from protoplasts
-
K.S. Rathore, V.K. Chowdhury, and T.K. Hodges Use of bar as a selectable marker gene and for the production of herbicide-resistant rice plants from protoplasts Plant Mol. Biol. 21 1993 871 884
-
(1993)
Plant Mol. Biol.
, vol.21
, pp. 871-884
-
-
Rathore, K.S.1
Chowdhury, V.K.2
Hodges, T.K.3
-
26
-
-
0000892405
-
Cloning and characterization of a cDNA encoding an mRNA rapidly-induced by ABA in barley aleurone layers
-
B. Hong, S.J. Uknes, and T.-H.D. Ho Cloning and characterization of a cDNA encoding an mRNA rapidly-induced by ABA in barley aleurone layers Plant Mol. Biol. 11 1988 495 506
-
(1988)
Plant Mol. Biol.
, vol.11
, pp. 495-506
-
-
Hong, B.1
Uknes, S.J.2
Ho, T.-H.D.3
-
27
-
-
0030111369
-
Engineered GFP as a vital reporter in plants
-
W.-L. Chiu, Y. Niwa, W. Zeng, T. Hirano, H. Kobayashi, and J. Sheen Engineered GFP as a vital reporter in plants Curr. Biol. 6 1996 325 330
-
(1996)
Curr. Biol.
, vol.6
, pp. 325-330
-
-
Chiu, W.-L.1
Niwa, Y.2
Zeng, W.3
Hirano, T.4
Kobayashi, H.5
Sheen, J.6
-
28
-
-
0021719495
-
Nucleotide sequence and transcriptional start point of the phosphomannose isomerase gene (manA) of Escherichia coli
-
J.S. Miles, and J.R. Guest Nucleotide sequence and transcriptional start point of the phosphomannose isomerase gene (manA) of Escherichia coli Gene 32 1984 41 48
-
(1984)
Gene
, vol.32
, pp. 41-48
-
-
Miles, J.S.1
Guest, J.R.2
-
29
-
-
0028500170
-
The small, versatile pPZP family of Agrobacterium binary vectors for plant transformation
-
P. Hajdukiewicz, Z. Svab, and P. Maliga The small, versatile pPZP family of Agrobacterium binary vectors for plant transformation Plant Mol. Biol. 25 1994 989 994
-
(1994)
Plant Mol. Biol.
, vol.25
, pp. 989-994
-
-
Hajdukiewicz, P.1
Svab, Z.2
Maliga, P.3
-
30
-
-
12744261386
-
Overexpression of rice TLPD34 enhances dollar-spot resistance in transgenic bentgrass
-
D. Fu, N.A. Tisserat, Y. Xiao, D. Settle, S. Muthukrishnan, and G.H. Liang Overexpression of rice TLPD34 enhances dollar-spot resistance in transgenic bentgrass Plant Sci. 168 2004 671 680
-
(2004)
Plant Sci.
, vol.168
, pp. 671-680
-
-
Fu, D.1
Tisserat, N.A.2
Xiao, Y.3
Settle, D.4
Muthukrishnan, S.5
Liang, G.H.6
-
33
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
M. Zuker Mfold web server for nucleic acid folding and hybridization prediction Nucl. Acids Res. 31 2003 3406 3415
-
(2003)
Nucl. Acids Res.
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
34
-
-
0029985398
-
Asymmetric substitution patterns in the two DNA strands of bacteria
-
J.R. Lobry Asymmetric substitution patterns in the two DNA strands of bacteria Mol. Biol. E 13 1996 660 665
-
(1996)
Mol. Biol. e
, vol.13
, pp. 660-665
-
-
Lobry, J.R.1
-
36
-
-
0031030679
-
T-DNA integration patterns in co-transformed plant cells suggest that T-DNA repeats originate from co-integration of separate T-DNAs
-
M. De Neve, S. De Buck, A. Jacobs, M. van Montagu, and A. Depicker T-DNA integration patterns in co-transformed plant cells suggest that T-DNA repeats originate from co-integration of separate T-DNAs Plant J. 11 1997 15 29
-
(1997)
Plant J.
, vol.11
, pp. 15-29
-
-
De, N.M.1
De, B.S.2
Jacobs, A.3
Van Montagu, M.4
Depicker, A.5
-
37
-
-
0037133340
-
T-DNA integration into the barley genome from single and double cassette vectors
-
R. Stahl, H. Horvath, J. van Fleet, M. Voetz, D. von Wettstein, and N. Wolf T-DNA integration into the barley genome from single and double cassette vectors Proc. Natl. Acad. Sci. U.S.A. 99 2002 2146 2151
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 2146-2151
-
-
Stahl, R.1
Horvath, H.2
Van Fleet, J.3
Voetz, M.4
Von Wettstein, D.5
Wolf, N.6
-
38
-
-
0030060321
-
Integration of complete transferred DNA units is dependent on the activity of virulence E2 protein of Agrobacterium tumefaciens
-
L. Rossi, B. Hohn, and B. Tinland Integration of complete transferred DNA units is dependent on the activity of virulence E2 protein of Agrobacterium tumefaciens Proc. Natl. Acad. Sci. U.S.A. 93 1996 126 130
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 126-130
-
-
Rossi, L.1
Hohn, B.2
Tinland, B.3
-
40
-
-
0023502773
-
Mobilization of T-DNA from Agrobacterium to plant cells involves a protein that binds single-stranded DNA
-
C. Gietl, Z. Koukolikova-Nicola, and B. Hohn Mobilization of T-DNA from Agrobacterium to plant cells involves a protein that binds single-stranded DNA Proc. Natl. Acad. Sci. U.S.A. 84 1987 9006 9010
-
(1987)
Proc. Natl. Acad. Sci. U.S.A.
, vol.84
, pp. 9006-9010
-
-
Gietl, C.1
Koukolikova-Nicola, Z.2
Hohn, B.3
-
41
-
-
0024022150
-
The Agrobacterium tumefaciens virE2 gene product is a single-stranded DNA-binding protein that associates with T-DNA
-
P.J. Christie, J.E. Ward, S.C. Winans, and E.W. Nester The Agrobacterium tumefaciens virE2 gene product is a single-stranded DNA-binding protein that associates with T-DNA J. Bacteriol. 170 1988 2659 2667
-
(1988)
J. Bacteriol.
, vol.170
, pp. 2659-2667
-
-
Christie, P.J.1
Ward, J.E.2
Winans, S.C.3
Nester, E.W.4
-
43
-
-
0029360641
-
Transfer of non-T-DNA portions of the Agrobacterium tumefaciens Ti plasmid pTiA6 from the left terminus of TL-DNA
-
V. Ramanathan, and K. Veluthambi Transfer of non-T-DNA portions of the Agrobacterium tumefaciens Ti plasmid pTiA6 from the left terminus of TL-DNA Plant Mol. Biol. 28 1995 1149 1154
-
(1995)
Plant Mol. Biol.
, vol.28
, pp. 1149-1154
-
-
Ramanathan, V.1
Veluthambi, K.2
-
44
-
-
0031149306
-
Integration of T-DNA binary vector 'backbone' sequences into the tobacco genome: Evidence for multiple complex patterns of integration
-
M.E. Kononov, B. Bassuner, and S.B. Gelvin Integration of T-DNA binary vector 'backbone' sequences into the tobacco genome: evidence for multiple complex patterns of integration Plant J. 11 1997 945 957
-
(1997)
Plant J.
, vol.11
, pp. 945-957
-
-
Kononov, M.E.1
Bassuner, B.2
Gelvin, S.B.3
-
45
-
-
0034521157
-
T-DNA vector backbone sequences are frequently integrated into the genome of transgenic plants obtained by Agrobacterium-mediated transformation
-
S. De Buck, C. De Wilde, M. van Montagu, and A. Depicker T-DNA vector backbone sequences are frequently integrated into the genome of transgenic plants obtained by Agrobacterium-mediated transformation Mol. Breed. 6 2000 459 468
-
(2000)
Mol. Breed.
, vol.6
, pp. 459-468
-
-
De Buck, S.1
De Wilde, C.2
Van Montagu, M.3
Depicker, A.4
-
46
-
-
18644369103
-
Analyses of single-copy Arabidopsis T-DNA-transformed lines show that the presence of vector backbone sequences, short inverted repeats and DNA methylation is not sufficient or necessary for the induction of transgene silencing
-
T.J. Meza, B. Stangeland, I.S. Mercy, M. Skårn, D.A. Nymoen, A. Berg, M.A. Butenko, A.-M. Håkelien, C. Haslekås, L.A. Meza-Zepeda, and R.B. Aalen Analyses of single-copy Arabidopsis T-DNA-transformed lines show that the presence of vector backbone sequences, short inverted repeats and DNA methylation is not sufficient or necessary for the induction of transgene silencing Nucl. Acids Res. 30 2002 4556 4566
-
(2002)
Nucl. Acids Res.
, vol.30
, pp. 4556-4566
-
-
Meza, T.J.1
Stangeland, B.2
Mercy, I.S.3
Skårn, M.4
Nymoen, D.A.5
Berg, A.6
Butenko, M.A.7
Håkelien, A.-M.8
Haslekås, C.9
Meza-Zepeda, L.A.10
Aalen, R.B.11
-
47
-
-
13444278851
-
T-DNA locus structure in a large population of soybean plants transformed using the Agrobacterium-mediated cotyledonary-node method
-
P.M. Olhoft, L.E. Flagel, and D.A. Somers T-DNA locus structure in a large population of soybean plants transformed using the Agrobacterium-mediated cotyledonary-node method Plant Biotechnol. J. 2 2004 289 300
-
(2004)
Plant Biotechnol. J.
, vol.2
, pp. 289-300
-
-
Olhoft, P.M.1
Flagel, L.E.2
Somers, D.A.3
-
48
-
-
0030813154
-
Non-homologous DNA end joining in plant cells is associated with deletions and filler DNA insertions
-
V.V. Gorbunova, and A.A. Levy Non-homologous DNA end joining in plant cells is associated with deletions and filler DNA insertions Nucl. Acids Res. 25 1997 4650 4657
-
(1997)
Nucl. Acids Res.
, vol.25
, pp. 4650-4657
-
-
Gorbunova, V.V.1
Levy, A.A.2
-
49
-
-
0036689386
-
Transgene integration in aspen: Structures of integration sites and mechanism of T-DNA integration
-
S. Kumar, and M. Fladung Transgene integration in aspen: structures of integration sites and mechanism of T-DNA integration Plant J. 31 2002 543 551
-
(2002)
Plant J.
, vol.31
, pp. 543-551
-
-
Kumar, S.1
Fladung, M.2
-
50
-
-
0347051815
-
T-DNA integration in Arabidopsis chromosomes, presence and origin of filler DNA sequences
-
P. Windels, S. De Buck, E. Van Bockstaele, M. De Loose, and A. Depicker T-DNA integration in Arabidopsis chromosomes, presence and origin of filler DNA sequences Plant Physiol. 133 2003 2061 2068
-
(2003)
Plant Physiol.
, vol.133
, pp. 2061-2068
-
-
Windels, P.1
De Buck, S.2
Van Bockstaele, E.3
De Loose, M.4
Depicker, A.5
-
51
-
-
0033057606
-
How plants make ends meet: DNA double-strand break repair
-
V.V. Gorbunova, and A.A. Levy How plants make ends meet: DNA double-strand break repair Trends Plant Sci. 4 1999 263 269
-
(1999)
Trends Plant Sci.
, vol.4
, pp. 263-269
-
-
Gorbunova, V.V.1
Levy, A.A.2
-
52
-
-
0002948180
-
Homology recognition during T-DNA integration into the plant genome
-
J. Paszkowski Kluwer Academic Publishers Dordrecht, The Netherlands
-
C. Koncz, K. Németh, G.P. Redei, and J. Schell Homology recognition during T-DNA integration into the plant genome J. Paszkowski Homologous Recombination and Gene Silencing in Plants 1994 Kluwer Academic Publishers Dordrecht, The Netherlands 167 189
-
(1994)
Homologous Recombination and Gene Silencing in Plants
, pp. 167-189
-
-
Koncz, C.1
Németh, K.2
Redei, G.P.3
Schell, J.4
-
53
-
-
0031779669
-
Major chromosomal rearrangements induced by T-DNA transformation in Arabidopsis
-
P. Nacry, C. Camilleri, B. Courtial, M. Caboche, and D. Bouchez Major chromosomal rearrangements induced by T-DNA transformation in Arabidopsis Genetics 149 1998 641 650
-
(1998)
Genetics
, vol.149
, pp. 641-650
-
-
Nacry, P.1
Camilleri, C.2
Courtial, B.3
Caboche, M.4
Bouchez, D.5
-
54
-
-
0029170438
-
DNA rearrangements associated with the integration of T-DNA in tobacco: An example for multiple duplications of DNA around the integration target
-
T. Ohba, Y. Yoshioka, C. Machida, and Y. Machida DNA rearrangements associated with the integration of T-DNA in tobacco: an example for multiple duplications of DNA around the integration target Plant J. 7 1995 157 164
-
(1995)
Plant J.
, vol.7
, pp. 157-164
-
-
Ohba, T.1
Yoshioka, Y.2
MacHida, C.3
MacHida, Y.4
-
55
-
-
0027131790
-
Genetic and molecular characterization of embryonic mutants identified following seed transformation in Arabidopsis
-
L.A. Castle, D. Errampalli, T.L. Atherton, L.H. Franzmann, E.S. Yoon, and D.W. Meinke Genetic and molecular characterization of embryonic mutants identified following seed transformation in Arabidopsis Mol. Gen. Genet. 241 1993 504 514
-
(1993)
Mol. Gen. Genet.
, vol.241
, pp. 504-514
-
-
Castle, L.A.1
Errampalli, D.2
Atherton, T.L.3
Franzmann, L.H.4
Yoon, E.S.5
Meinke, D.W.6
-
56
-
-
0030967197
-
The silence of genes in transgenic plants
-
M. Stam, J.N.M. Mol, and J.M. Kooter The silence of genes in transgenic plants Ann. Bot. 79 1997 3 12
-
(1997)
Ann. Bot.
, vol.79
, pp. 3-12
-
-
Stam, M.1
Mol, J.N.M.2
Kooter, J.M.3
-
57
-
-
0032815855
-
Listening to the silent genes: Transgene silencing, gene regulation and pathogen control
-
J.M. Kooter, M.A. Matzke, and P. Meyer Listening to the silent genes: transgene silencing, gene regulation and pathogen control Trends Plant Sci. 4 1999 340 347
-
(1999)
Trends Plant Sci.
, vol.4
, pp. 340-347
-
-
Kooter, J.M.1
Matzke, M.A.2
Meyer, P.3
-
58
-
-
0031796374
-
Position-dependent methylation and transcriptional silencing of transgenes in inverted T-DNA repeats: Implications for posttranscriptional silencing of homologous host genes in plants
-
M. Stam, A. Viterbo, J.N.M. Mol, and J.M. Kooter Position-dependent methylation and transcriptional silencing of transgenes in inverted T-DNA repeats: implications for posttranscriptional silencing of homologous host genes in plants Mol. Cell Biol. 18 1998 6165 6177
-
(1998)
Mol. Cell Biol.
, vol.18
, pp. 6165-6177
-
-
Stam, M.1
Viterbo, A.2
Mol, J.N.M.3
Kooter, J.M.4
-
59
-
-
0033574570
-
Gene silencing: Repeats that count
-
E.U. Selker Gene silencing: repeats that count Cell 97 1999 157 160
-
(1999)
Cell
, vol.97
, pp. 157-160
-
-
Selker, E.U.1
-
60
-
-
0029009111
-
The Agrobacterium tumefaciens Virulence D2 protein is responsible for precise integration of T-DNA into the plant genome
-
B. Tinland, F. Schoumacher, V. Gloeckler, A.-M. Bravo-Angel, and B. Hohn The Agrobacterium tumefaciens Virulence D2 protein is responsible for precise integration of T-DNA into the plant genome EMBO J. 14 1995 3585 3595
-
(1995)
EMBO J.
, vol.14
, pp. 3585-3595
-
-
Tinland, B.1
Schoumacher, F.2
Gloeckler, V.3
Bravo-Angel, A.-M.4
Hohn, B.5
-
61
-
-
0037023384
-
A draft sequence of the rice genome (Oryza sativa L. ssp. indica)
-
J. Yu, S. Hu, J. Wang, G.K. Wong, S. Li, B. Liu, and Y. Deng A draft sequence of the rice genome (Oryza sativa L. ssp. indica) Science 296 2002 79 92
-
(2002)
Science
, vol.296
, pp. 79-92
-
-
Yu, J.1
Hu, S.2
Wang, J.3
Wong, G.K.4
Li, S.5
Liu, B.6
Deng, Y.7
-
62
-
-
15444350252
-
The Complete genome sequence of Escherichia coli K-12
-
F.R. Blattner III, G. Plunkett, C.A. Bloch, N.T. Perna, V. Burland, M. Riley, J. Collado-Vides, J.D. Glasner, C.K. Rode, G.F. Mayhew, J. Gregor, N.W. Davis, H.A. Kirkpatrick, M.A. Goeden, D.J. Rose, B. Mau, and Y. Shao The Complete genome sequence of Escherichia coli K-12 Science 277 1997 1453 1474
-
(1997)
Science
, vol.277
, pp. 1453-1474
-
-
Blattner III, F.R.1
Plunkett, G.2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
Riley, M.6
Collado-Vides, J.7
Glasner, J.D.8
Rode, C.K.9
Mayhew, G.F.10
Gregor, J.11
Davis, N.W.12
Kirkpatrick, H.A.13
Goeden, M.A.14
Rose, D.J.15
Mau, B.16
Shao, Y.17
-
63
-
-
0032524384
-
Analyzing genomes with cumulative skew diagrams
-
A. Grigoriev Analyzing genomes with cumulative skew diagrams Nucl. Acids Res. 26 1998 2286 2290
-
(1998)
Nucl. Acids Res.
, vol.26
, pp. 2286-2290
-
-
Grigoriev, A.1
-
64
-
-
0033013312
-
Strand-specific compositional asymmetries in double-strand DNA viruses
-
A. Grigoriev Strand-specific compositional asymmetries in double-strand DNA viruses Virus Res. 60 1999 1 19
-
(1999)
Virus Res.
, vol.60
, pp. 1-19
-
-
Grigoriev, A.1
-
65
-
-
0028674914
-
Long palindromes, cruciform structures, genetic instability and secondary structure repair
-
D.R.F. Leach Long palindromes, cruciform structures, genetic instability and secondary structure repair BioEssays 16 1994 893 900
-
(1994)
BioEssays
, vol.16
, pp. 893-900
-
-
Leach, D.R.F.1
-
66
-
-
0032565510
-
Yeast ARMs (DNA at-risk motifs) can reveal sources of genome instability
-
D.A. Gordenin, and M.A. Resnick Yeast ARMs (DNA at-risk motifs) can reveal sources of genome instability Mutat. Res. 400 1998 45 58
-
(1998)
Mutat. Res.
, vol.400
, pp. 45-58
-
-
Gordenin, D.A.1
Resnick, M.A.2
-
67
-
-
0029871490
-
Instability of long inverted repeats within mouse transgenes
-
A. Collick, J. Drew, J. Penberth, P. Bois, J. Luckett, F. Scaerou, A. Jeffreys, and W. Reik Instability of long inverted repeats within mouse transgenes EMBO J. 15 1996 1163 1171
-
(1996)
EMBO J.
, vol.15
, pp. 1163-1171
-
-
Collick, A.1
Drew, J.2
Penberth, J.3
Bois, P.4
Luckett, J.5
Scaerou, F.6
Jeffreys, A.7
Reik, W.8
-
68
-
-
0030837535
-
Palindrome resolution and recombination in the mammalian germ line
-
E. Akgun, J. Zahn, S. Baumes, G. Brown, F. Liang, P.J. Romanienko, S. Lewis, and M. Jasin Palindrome resolution and recombination in the mammalian germ line Mol. Cell Biol. 17 1997 5559 5570
-
(1997)
Mol. Cell Biol.
, vol.17
, pp. 5559-5570
-
-
Akgun, E.1
Zahn, J.2
Baumes, S.3
Brown, G.4
Liang, F.5
Romanienko, P.J.6
Lewis, S.7
Jasin, M.8
-
69
-
-
0036999941
-
A 110 bp palindrome stimulates plasmid integration in yeast
-
S. Ivan-Krešimir, L. Berislav, and Z. Zoran A 110 bp palindrome stimulates plasmid integration in yeast Periodicum Biologorum 104 2002 421 424
-
(2002)
Periodicum Biologorum
, vol.104
, pp. 421-424
-
-
Ivan-Krešimir, S.1
Berislav, L.2
Zoran, Z.3
-
70
-
-
0031941013
-
Factors affecting inverted repeat stimulation of recombination and deletion in Saccharomyces cerevisiae
-
K.S. Lobachev, B.M. Shor, H.T. Tran, W. Taylor, J.D. Keen, M.A. Resnick, and D.A. Gordenin Factors affecting inverted repeat stimulation of recombination and deletion in Saccharomyces cerevisiae Genetics 148 1998 1507 1524
-
(1998)
Genetics
, vol.148
, pp. 1507-1524
-
-
Lobachev, K.S.1
Shor, B.M.2
Tran, H.T.3
Taylor, W.4
Keen, J.D.5
Resnick, M.A.6
Gordenin, D.A.7
-
71
-
-
0030794661
-
A 140 bp long palindromic sequence induces double-strand breaks during meiosis in the yeast Saccharomyces cerevisiae
-
D.K. Nag, and A. Kurst A 140 bp long palindromic sequence induces double-strand breaks during meiosis in the yeast Saccharomyces cerevisiae Genetics 146 1997 835 847
-
(1997)
Genetics
, vol.146
, pp. 835-847
-
-
Nag, D.K.1
Kurst, A.2
-
72
-
-
0033103075
-
Molecular characterization of transforming plasmid rearrangements in transgenic rice reveals a recombination hotspot in the CaMV 35S promoter and confirms the predominance of microhomology mediated recombination
-
A. Kohli, S. Griffiths, N. Palacios, R.M. Twyman, P. Vain, D.A. Laurie, and P. Christou Molecular characterization of transforming plasmid rearrangements in transgenic rice reveals a recombination hotspot in the CaMV 35S promoter and confirms the predominance of microhomology mediated recombination Plant J. 17 1999 591 601
-
(1999)
Plant J.
, vol.17
, pp. 591-601
-
-
Kohli, A.1
Griffiths, S.2
Palacios, N.3
Twyman, R.M.4
Vain, P.5
Laurie, D.A.6
Christou, P.7
-
73
-
-
0025653184
-
Integration of Agrobacterium T-DNA into a tobacco chromosome: Possible involvement of DNA homology between T-DNA and plant DNA
-
S. Matsumoto, Y. Ito, T. Hosoi, Y. Takahashi, and Y. Machida Integration of Agrobacterium T-DNA into a tobacco chromosome: possible involvement of DNA homology between T-DNA and plant DNA Mol. Gen. Genet. 224 1990 309 316
-
(1990)
Mol. Gen. Genet.
, vol.224
, pp. 309-316
-
-
Matsumoto, S.1
Ito, Y.2
Hosoi, T.3
Takahashi, Y.4
MacHida, Y.5
-
74
-
-
0029204837
-
Recombination between prokaryotic and eukaryotic DNA: Integration of Agrobacterium tumefaciens T-DNA into the plant genome
-
B. Tinland, and B. Hohn Recombination between prokaryotic and eukaryotic DNA: integration of Agrobacterium tumefaciens T-DNA into the plant genome Genet. Eng. 17 1995 209 229
-
(1995)
Genet. Eng.
, vol.17
, pp. 209-229
-
-
Tinland, B.1
Hohn, B.2
-
75
-
-
0029066831
-
Transkingdom T-DNA transfer from Agrobacterium tumefaciens to Saccharomyces cerevisiae
-
P. Bundock, A. den Dulk-Ras, A. Beijersbergen, and P.J.J. Hooykaas Transkingdom T-DNA transfer from Agrobacterium tumefaciens to Saccharomyces cerevisiae EMBO J. 14 1995 3206 3214
-
(1995)
EMBO J.
, vol.14
, pp. 3206-3214
-
-
Bundock, P.1
Den Dulk-Ras, A.2
Beijersbergen, A.3
Hooykaas, P.J.J.4
-
76
-
-
0027146636
-
Site-specific cleavage and joining of single-stranded DNA by VirD2 protein of Agrobacterium tumefaciens Ti plasmids: Analogy to bacterial conjugation
-
W. Pansegrau, F. Schoumacher, B. Hohn, and E. Lanka Site-specific cleavage and joining of single-stranded DNA by VirD2 protein of Agrobacterium tumefaciens Ti plasmids: analogy to bacterial conjugation Proc. Natl. Acad. Sci. U.S.A. 90 1993 11538 11542
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, pp. 11538-11542
-
-
Pansegrau, W.1
Schoumacher, F.2
Hohn, B.3
Lanka, E.4
-
77
-
-
0027065567
-
A nuclear localization signal and the C-terminal omega sequence in the Agrobacterium tumefaciens VirD2 endonuclease are important for tumor formation
-
C.E. Shurvinton, L. Hodges, and W. Ream A nuclear localization signal and the C-terminal omega sequence in the Agrobacterium tumefaciens VirD2 endonuclease are important for tumor formation Proc. Natl. Acad. Sci. U.S.A. 89 1992 11837 11841
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 11837-11841
-
-
Shurvinton, C.E.1
Hodges, L.2
Ream, W.3
-
78
-
-
0022669622
-
The integrase family of site-specific recombinases: Regional similarities and global diversity
-
P. Argos, A. Landy, K. Abremski, J.B. Egan, E. Haggard-Ljungquist, R.H. Hoess, M.L. Kahn, B. Kalionis, S.V. Narayana, and L.S.D. Pierson The integrase family of site-specific recombinases: regional similarities and global diversity EMBO J. 5 1986 433 440
-
(1986)
EMBO J.
, vol.5
, pp. 433-440
-
-
Argos, P.1
Landy, A.2
Abremski, K.3
Egan, J.B.4
Haggard-Ljungquist, E.5
Hoess, R.H.6
Kahn, M.L.7
Kalionis, B.8
Narayana, S.V.9
Pierson, L.S.D.10
-
79
-
-
0033842945
-
Plant enzymes but not Agrobacterium VirD2 mediate T-DNA ligation in vitro
-
A. Ziemienowicz, B. Tinland, J. Bryant, V. Gloeckler, and B. Hohn Plant enzymes but not Agrobacterium VirD2 mediate T-DNA ligation in vitro Mol. Cell Biol. 20 2000 6317 6322
-
(2000)
Mol. Cell Biol.
, vol.20
, pp. 6317-6322
-
-
Ziemienowicz, A.1
Tinland, B.2
Bryant, J.3
Gloeckler, V.4
Hohn, B.5
-
80
-
-
0025183234
-
Extrachromosomal homologous recombination and gene targeting in plant cells after Agrobacterium-mediated transformation
-
R. Offringa, M.J.A. de Groot, H.J. Haagsman, M.P. Does, P.J.M. van den Elzen, and P.J.J. Hooykaas Extrachromosomal homologous recombination and gene targeting in plant cells after Agrobacterium-mediated transformation EMBO J. 9 1990 3077 3084
-
(1990)
EMBO J.
, vol.9
, pp. 3077-3084
-
-
Offringa, R.1
De Groot, M.J.A.2
Haagsman, H.J.3
Does, M.P.4
Van Den Elzen, P.J.M.5
Hooykaas, P.J.J.6
-
81
-
-
0028068772
-
Agrobacterium tumefaciens transfers single-stranded transfer DNA (T-DNA) into the plant cell nucleus
-
B. Tinland, B. Hohn, and H. Puchta Agrobacterium tumefaciens transfers single-stranded transfer DNA (T-DNA) into the plant cell nucleus Proc. Natl. Acad. Sci. U.S.A. 91 1994 8000 8004
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 8000-8004
-
-
Tinland, B.1
Hohn, B.2
Puchta, H.3
-
82
-
-
0033231623
-
The DNA sequences of T-DNA junctions suggest that complex DNA loci are formed by recombination process resembling T-DNA integration
-
S. De Buck, A. Jacobs, M. van Montagu, and A. Depicker The DNA sequences of T-DNA junctions suggest that complex DNA loci are formed by recombination process resembling T-DNA integration Plant J. 20 1999 295 304
-
(1999)
Plant J.
, vol.20
, pp. 295-304
-
-
De Buck, S.1
Jacobs, A.2
Van Montagu, M.3
Depicker, A.4
-
83
-
-
3242669954
-
Agrobacterium T-DNA integration: Molecules and models
-
T. Tzfira, J. Li, B. Lacroix, and V. Citovsky Agrobacterium T-DNA integration: molecules and models Trends Genet. 20 2004 375 383
-
(2004)
Trends Genet.
, vol.20
, pp. 375-383
-
-
Tzfira, T.1
Li, J.2
Lacroix, B.3
Citovsky, V.4
-
84
-
-
0032531757
-
Capture of genomic and T-DNA sequences during double-stranded break repair in somatic plant cells
-
S. Salomon, and H. Puchta Capture of genomic and T-DNA sequences during double-stranded break repair in somatic plant cells EMBO J. 17 1998 6086 6095
-
(1998)
EMBO J.
, vol.17
, pp. 6086-6095
-
-
Salomon, S.1
Puchta, H.2
-
85
-
-
0344583765
-
Targeted integration of T-DNA into the tobacco genome at double-stranded breaks: New insights on the mechanism of T-DNA integration
-
M.-D.M. Chilton, and Q. Que Targeted integration of T-DNA into the tobacco genome at double-stranded breaks: new insights on the mechanism of T-DNA integration Plant Physiol. 133 2003 956 965
-
(2003)
Plant Physiol.
, vol.133
, pp. 956-965
-
-
Chilton, M.-D.M.1
Que, Q.2
-
86
-
-
0345014810
-
Site-specific integration of Agrobacterium tumefaciens T-DNA via double-stranded intermediates
-
T. Tzfira, L.R. Frankman, M. Vaidya, and V. Citovsky Site-specific integration of Agrobacterium tumefaciens T-DNA via double-stranded intermediates Plant Physiol. 133 2003 1011 1023
-
(2003)
Plant Physiol.
, vol.133
, pp. 1011-1023
-
-
Tzfira, T.1
Frankman, L.R.2
Vaidya, M.3
Citovsky, V.4
-
87
-
-
0000052649
-
From host recognition to T-DNA integration: The function of bacterial and plant genes in the Agrobacterium-plant cell interaction
-
T. Tzfira, and V. Citovsky From host recognition to T-DNA integration: the function of bacterial and plant genes in the Agrobacterium-plant cell interaction Mol. Plant Pathol. 1 2000 201 212
-
(2000)
Mol. Plant Pathol.
, vol.1
, pp. 201-212
-
-
Tzfira, T.1
Citovsky, V.2
-
88
-
-
0036498819
-
Partners-in-infection: Host proteins involved in the transformation of plant cells by Agrobacterium
-
T. Tzfira, and V. Citovsky Partners-in-infection: host proteins involved in the transformation of plant cells by Agrobacterium Trends Cell Biol. 12 2002 121 129
-
(2002)
Trends Cell Biol.
, vol.12
, pp. 121-129
-
-
Tzfira, T.1
Citovsky, V.2
-
89
-
-
0035890166
-
Non-homologous end-joining proteins are required for Agrobacterium T-DNA integration
-
H. van Attikum, B. Bundock, and P.J.J. Hooykaas Non-homologous end-joining proteins are required for Agrobacterium T-DNA integration EMBO J. 20 2001 6550 6558
-
(2001)
EMBO J.
, vol.20
, pp. 6550-6558
-
-
Van Attikum, H.1
Bundock, B.2
Hooykaas, P.J.J.3
-
90
-
-
0037854725
-
Ku80- and DNA ligase IV-deficient plants are sensitive to ionizing radiation and defective in T-DNA integration
-
J. Friesner, and A.B. Britt Ku80- and DNA ligase IV-deficient plants are sensitive to ionizing radiation and defective in T-DNA integration Plant J. 34 2003 427 440
-
(2003)
Plant J.
, vol.34
, pp. 427-440
-
-
Friesner, J.1
Britt, A.B.2
-
91
-
-
0344583764
-
Agrobacterium-mediated root transformation is inhibited by mutation of an Arabidopsis cellulose synthase-like gene
-
Y. Zhu, J. Nam, N.C. Carpita, A.G. Matthysse, and S.B. Gelvin Agrobacterium-mediated root transformation is inhibited by mutation of an Arabidopsis cellulose synthase-like gene Plant Physiol. 133 2003 1000 1010
-
(2003)
Plant Physiol.
, vol.133
, pp. 1000-1010
-
-
Zhu, Y.1
Nam, J.2
Carpita, N.C.3
Matthysse, A.G.4
Gelvin, S.B.5
-
92
-
-
0037329774
-
Genetic requirements for the targeted integration of Agrobacterium T-DNA in Saccharomyces cerevisiae
-
H. van Attikum, and P.J.J. Hooykaas Genetic requirements for the targeted integration of Agrobacterium T-DNA in Saccharomyces cerevisiae Nucl. Acids Res. 31 2003 826 832
-
(2003)
Nucl. Acids Res.
, vol.31
, pp. 826-832
-
-
Van Attikum, H.1
Hooykaas, P.J.J.2
-
93
-
-
16644395003
-
Plant proteins that interact with VirB2, the Agrobacterium tumefaciens pilin protein, mediate plant transformation
-
H.-H. Hwang, and S.B. Gelvin Plant proteins that interact with VirB2, the Agrobacterium tumefaciens pilin protein, mediate plant transformation Plant Cell 16 2004 3148 3167
-
(2004)
Plant Cell
, vol.16
, pp. 3148-3167
-
-
Hwang, H.-H.1
Gelvin, S.B.2
|