The influence of the heat bath and structural disorder in protein molecules on soliton transported bio-energy in an improved model

Journal of Physics Condensed Matter

Volumn 18, Issue 2, 2006, Pages 613-627

  Pang, Xiao Feng ^a,b   Zhang, Huai Wu ^a   Luo, Yu Hue ^a  

^a UNIVERSITY OF ELECTRONIC SCIENCE AND TECHNOLOGY OF CHINA   (China)

^b INTERNATIONAL CENTRE FOR MATERIALS PHYSICS   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING ENERGY; COMPUTER SIMULATION; GROUND STATE; MOLECULAR DYNAMICS; RUNGE KUTTA METHODS; SOLITONS; THERMODYNAMIC STABILITY;

HEAT BATH; PROTEIN MOLECULES; SPRING CONSTANTS; STRUCTURAL DISORDER;

PROTEINS;

EID: 29144509504     PISSN: 09538984     EISSN: 1361648X     Source Type: Journal    
DOI: 10.1088/0953-8984/18/2/018     Document Type: Article

References (119)

1. Davydov A S 1973 J. Theor. Biol. 38 559
2. Davydov A S 1979 Phys. Scr. 20 387
3. Davydov A S 1981 Physica D 3 1
4. Davydov A S 1982 Biology and Quantum Mechanics (New York: Pergamon)
5. Davydov A S 1985 Solitons in Molecular Systems 2nd edn 1991 (Dordrecht: Reidel)
6. Gheorghiu-Svirschevski S 2001 Phys. Rev. E 64 051907
7. Ivic Z, Zekiric S and Przuly Z 2002 Phys. Lett. A 306 144
8. Ivic Z 1998 Physica D 113 218
9. Tekic J, Ivic Z and Przulj Z 1998 J. Phys.: Condens. Matter 10 1487
10. Ivic Z, Zekovic S and Kostic D 2002 Phys. Rev. E 65 021911
11. Ivic Z, Przulj Z and Kostic D 2000 Phys. Rev. E 61 6963
12. Zekovi S and Ivic Z 1999 Bioelectrochem. Bioenerg. 48 293
13. Henning D 2000 Phys. Rev. E 61 4550
14. Henning D 2001 Eur. Phys. J. B 24 377
15. Christiansen P L and Scott A C 1990 Davydov's Soliton Revisited (New York: Plenum)
16. Scott A C 1982 Phys. Rev. A 26 578
17. Scott A C 1983 Phys. Rev. A 27 2767
18. Scott A C 1982 Phys. Scr. 25 651
19. Scott A C 1992 Phys. Rep. 217 1
20. Scott A C 1990 Physica D 51 333
21. Caspi S and Ben-Jacob E 2000 Phys. Lett. A 272 124
22. Brown D W 1988 Phys. Rev. A 37 5010
23. Brown D W and Ivic Z 1989 Phys. Rev. B 40 9876
24. Ivic Z and Brown D W 1989 Phys. Rev. Lett. 63 426
25. Brown D W, West B J and Lindenberg K 1986 Phys. Rev. A 33 4104
26. Brown D W, West B J and Lindenberg K 1986 Phys. Rev. A 33 4110
27. Brown D W, Lindenberg K and West B J 1987 Phys. Rev. B 35 6169
28. Brown D W, Lindenberg K and West B J 1988 Phys. Rev. B 37 2946
29. Brown D W, Lindenberg K and West B J 1986 Phys. Rev. Lett. 57 234
30. Pang X-F 1986 Chin. J. Biochem. Biophys. 18 1
31. Pang X-F 1986 Chin. J. Atom. Mol. Phys. 6 1986
32. Pang X-F 1986 Chin. Appl. Math. 10 276
33. Cruzeiro L, Halding J, Christiansen P L, Skovgard O and Scott A C 1985 Phys. Rev. A 37 703
34. Cruzeiro-Hansson L 1992 Phys. Rev. A 45 4111
35. Cruzeiro-Hansson L 1994 Phys. Rev. Lett. 73 2927
36. Cruzeiro-Hansson L 1993 Physica D 68 65
37. Cruzeiro-Hansson L 2002 Phys. Rev. E 66 023901
38. Cruzeiro-Hansson L, Kenker V M and Scott A C 1994 Phys. Lett. A 190 59
39. Förner W 1991 Phys. Rev. A 44 2694
40. Förner W 1991 J. Phys.: Condens. Matter 3 1915
41. Förner W 1992 J. Phys.: Condens. Matter 4 4333
42. Förner W 1993 J. Phys.: Condens. Matter 5 823
43. Förner W 1993 J. Phys.: Condens. Matter 5 883
44. Förner W 1993 J. Phys.: Condens. Matter 5 3883
45. Förner W 1993 J. Phys.: Condens. Matter 5 3897
46. Motschman H, Forner W and Ladik J 1989 J. Phys.: Condens. Matter 1 5083
47. Motschman H, Forner W and Ladik J 1993 Physica D 68 68
48. Motschman H, Forner W and Ladik J 1992 J. Comput. Chem. 13 275
49. Forner W and Ladik L J 1990 Davydov's Soliton Revisited (New York: Plenum) p 267
50. Lomdahl P S and Kerr W C 1985 Phys. Rev. Lett. 55 1235
51. Lomdahl P S and Kerr W C 1990 Davydov's Soliton Revisited (New York: Plenum) p 259
52. Kerr W C and Lomdahl P S 1989 Phys. Rev. B 35 3629
53. Kerr W C and Lomdahl P S 1989 Phys. Rev. B 35 3629
54. Kerr W C and Lomdahl P S 1990 Davydov's Soliton Revisited (New York: Plenum) p 23
55. Wang X, Brown D W and Lindenberg K 1998 Phys. Rev. A 37 3357
56. Wang X, Brown D W and Lindenberg K 1989 Phys. Rev. Lett. 62 1796
57. Cottingham J P and Schweitzer J W 1989 Phys. Rev. Lett. 62 1792
58. Schweitzer J W 1992 Phys. Rev. A 45 8914
59. Schweitzer J W 1990 Davydov's Soliton Revisited (New York: Plenum) p 285
60. Bolterauer H and Opper M 1991 Z. Phys. B 82 95
61. Bechtly and Shaw P B 1989 Phys. Rev. B 35 3629
62. Savin A V and Marevitch L I 2000 Phys. Rev. E 61 7015
63. Clogston A M 1998 Phys. Rev. E 58 6407
64. Pang X F 1990 J. Phys.: Condens. Matter 2 9541
65. Pang X F 1994 Phys. Rev. E 49 4747
66. Pang X F 1999 Eur. Phys. J. B 10 415
67. Pang X F 2001 Physica D 154 138
68. Pang X F 2003 Chem. Phys. Lett. 373 0392
69. Pang X F 2003 Phys. Status Solidi b 236 34
70. Pang X F 1993 Chin. Phys. Lett. 10 381
71. Pang X F 1993 Chin. Phys. Lett. 10 437
72. Pang X F 1993 Chin. Phys. Lett. 10 573
73. Pang X F 2003 Chin. Phys. Lett. 20 1662
74. Pang X F 2000 Chin. Phys. 9 108
75. Pang X F 2001 Commun. Theor. Phys. 35 763
76. Pang X F 1994 The Theory of Nonlinear Quantum Mechanics (Chongqing: Chongqing Press)
77. Pang X F 1993 Chin. Sci. Bull. 38 1572
78. Pang X F 1993 Chin. Sci. Bull. 38 1665
79. Pang X F 1998 Acta Phys. Slovaca 48 99
80. Pang X F 1993 Chin. J. Infrared Millim. Waves 12 377
81. Pang X F 1997 Chin. J. Infrared Millim. Waves 16 64
82. Pang X F 1997 Chin. J. Infrared Millim. Waves 16 232
83. Pang X F 1993 Acta. Phys. Sin. 42 1841
84. Pang X F 1997 Acta. Phys. Sin. 46 625
85. Pang X F 1987 Chin. J. Atom. Mol. Phys. 5 383
86. Pang X F 1995 Chin. J. Atom. Mol. Phys. 12 411
87. Pang X F 1996 Chin. J. Atom. Mol. Phys. 13 70
88. Pang X F 1997 Chin. J. Atom. Mol. Phys. 14 232
89. Pang X F 2001 Int. J. Infrared Millim. Waves 22 277
90. Pang X F 2002 Int. J. Infrared Millim. Waves 23 343
91. Pang X F and Muller-Kersten H J W 2000 J. Phys.: Condens. Matter 12 885
92. Takeno S 1984 Prog. Theor. Phys. 71 395
93. Takeno S 1985 Prog. Theor. Phys. 73 853
94. Takeno S 1991 J. Phys. Soc. Japan 59 3127
95. Pang X F 2000 Phys. Rev. E 62 6989
96. Pang X F 2001 Eur. Phys. J. B 19 297
97. Pang X F 2002 Eur. Phys. J. B 22 387
98. Pang X F 2001 Commun. Theor. Phys. 35 323
99. Pang X F 2002 Commun. Theor. Phys. 37 187
100. Pang X F 2003 Commun. Theor. Phys. 40 417
101. Pang X F 2004 Commun. Theor. Phys. 41 470
102. Pang X F 2005 Commun. Theor. Phys. 43 367
103. Pang X F and Feng Y-P 2001 Quantum Mechanics in Nonlinear Systems (New Jersey: World Science) pp 471-551
104. Pang X F 2001 J. Phys. Chem. Solids 62 793
105. Pang X F 1999 Chin. J. Biomed. Eng. 8 39
106. Pang X F 2001 Chin. J. Biomed. Eng. 10 26
107. Pang X F 2002 Phys. Status Solidi b 226 317
108. Pang X-F and Feng Y-P 2005 Quantum Mechanics in Nonlinear Systems (New Jersey: World Science) pp 471-551
109. Stiefel J 1965 Einfuhrung in die Numerische Mathematik (Stuttgart: Teubner)
110. Atkinson K E 1987 An Introduction to Numerical Analysis (New York: Wiley)
111. Careri G, Buontempo U, Galluzzi F, Scott A C, Gratton E and Shydmsunder E 1984 Phys. Rev. B 30 4689
112. Eilbeck J C, Lomdahl P S and Scott A C 1985 Physica D 16 318
113. Eilbeck J C, Lomdahl P S and Scott A C 1984 Phys. Rev. B 30 4073
114. Halding J and Lomdahl P S 1987 Phys. Lett. A 124 37
115. Lawrence A F, McDanie J C, Chang D B, Pierce B M and Brirge P R 1986 Phys. Rev. A 33 1188
116. Helfand E 1979 Bell Syst. Tech. J. 58 2289
117. Greenside H S and Helf E 1981 Bell Syst. Tech. J. 60 1738
118. Ramirez-Piscina L, Sancho J M, de la Rubia F J, Lindenberg K and Tsironis G P 1989 Phys. Rev. A 40 2120
119. Förner W 1991 J. Phys.: Condens. Matter 3 3235