Comparison of shape analysis methods for Guinardia citricarpa ascospore characterization

Electronic Journal of Biotechnology

Volumn 8, Issue 3, 2005, Pages 265-275

  Pazoti, Mário Augusto ^a   Garcia, Rogério Eduardo ^a   Pessoa, José Dalton Cruz ^b   Bruno, Odemir Martinez ^a  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

^b EMBRAPA CERRADOS   (Brazil)

Author keywords

Computer vision; Curvature; Pattern recognition; Shape analysis; Shape signature and projection

Indexed keywords

COMPUTER VISION; CROPS; FUNGUS ATTACK; PATTERN RECOGNITION;

CITRUS BLACK SPOT (CBS); CURVATURE; SHAPE ANALYSIS; SHAPE SIGNATURE AND PROJECTION;

DISEASES;

ANALYTIC METHOD; ARTICLE; ASCOSPORE; CELL SHAPE; COMPARATIVE STUDY; COMPUTER ANALYSIS; FUNGUS; FUNGUS IDENTIFICATION; GUINARDIA CITRICARPA; NONHUMAN;

DISEASES; FARM CROPS; FUNGI; ORCHARDS; PATTERN RECOGNITION;

CITRUS; FUNGI; GUINARDIA;

EID: 29144440147     PISSN: 07173458     EISSN: 07173458     Source Type: Journal    
DOI: 10.2225/vol8-issue3-fulltext-1     Document Type: Article

References (21)

1. ARAYA-KROFF, P.; AMARAL, A.L.; NEVES, L.; FERREIRA, E.C.; PONS, M.N.; MOTA, M.; ALVES, M.M. Development of image analysis techniques as a tool to detect and quantify morphological changes in anaerobic sludge: I. Application to a granulation process. Biotechnology and Bioengineering, 2004, vol. 87, no. 2, p. 184-193.
2. BAAYEN, R.P.; BONANTS, P.J.M.; VERKLEY, G.; CARROLL, G.C.; VAN DER AA, H.A.; WEERDT, M.; VAN BROUWERSHAVEN, I.R.; SCHUTTE, G.C.; MACCHERONI, W.; GLIENKE DE BLANCO, C. and AZEVEDO, J.L. Nonpathogenic Isolates of the citrus black spot fungus, Guignardia citricarpa, identified as a cosmopolitan endophyte of woody plants, G. mangiferae (Phyllosticta capitalensis). Phytopathology, 2002, vol. 92, no. 5, p. 464-477.
3. BALDASSARI, Ricardo B.; GOES, Antonio; SANTOS, Jaime M. and TIMOSSI, Adriano J. Microscopia eletrônica de varredura de isolados de Guignardia citricarpa obtidos de plantas cítricas. Summa Phytopathologica, 2001, vol.27, no. 1, p. 88-92.
4. BRIGHAM, E.O. The Fast Fourier Transform and its application. Englewood Cliffs, Prentice Hall, 1988, 448 p. ISBN 0133075052.
5. BONANTS, Peter J.M.; CARROLL, George C.; WEERDT, Marjanne; BROUWERSHAVEN, Ilse R. and BAAYEN, Robert P. Development and validation of a fast PCR-based detection method for pathogenic isolates of the citrus black spot fungus, Guignardia citricarpa. European Journal of Plant Pathology, 2003, vol. 109, no. 5, p. 503-513.
6. CESAR JR., Roberto M. and COSTA, Luciano F. Towards effective planar shape representation with multiscale digital curvature analysis based on signal processing techniques. Pattern Recognition, 1996, vol. 29, no. 9, p. 1559-1569.
7. COSTA, Luciano F.; REIS, Sérgio F.; ARANTES, Renata A.T.; ALVES, Ana C.R. and MUTINARI, GianCarlo. Biological shape analysis by digital curvature. Pattern Recognition, 2004, vol.37, no. 3, p. 515-524.
8. COSTA, Luciano F. and CESAR JR, Roberto M. Shape analysis and classification: theory and practice. Boca Raton, CRC Press, 2001, 659 p. ISBN 0849334934.
9. EPPO/CABI. Guignardia citricarpa. In: Quarantine Pests for Europe. 2nd ed. CAB International, Wallingford (GB), 1997, p. 773-781.
10. GOES, Antonio. Efeito da combinação de fungicidas sistêmicos e protetores no controle da mancha preta dos frutos cítricos causada por Guignardia citricarpa. Summa Phytopathologica, 2002,vol.28, no. 1, p. 09-13. (in Portuguese)
11. GONZALEZ, Rafael C. and WOODS, Richard E. Digital image processing. Upper Saddle River, Prentice Hall, 2002, 793 p. ISBN 0201180758.
12. JAIN, Anil K. Fundamentals of Digital Image Processing. Englewood Cliffs, Prentice-Hall, 1989, 569 p. ISBN 0133361659.
13. KRZANOWSKI, W.J. and MARRIOTT, F.H. Multivariate analysis: Classification, covariance structures and repeated measurements. Arnold Publishers, 1998. 288 p. ISBN 0340593253.
14. MOKHTARIAN, Farzin. and MACKWORTH, Alan K. A theory of multi-scale, curvature-based shape representation for planar curves. IEEE Trans. Pattern Analysis and Machine Intelligence, 1992,vol.14, p. 789-805.
15. PARKER, J. R. Algorithms for image processing and computer vision. New York, Wiley Computer Pub, 1997, 432 p. ISBN 0471140562.
16. PINO, F.A. (Org.). Levantamento censitário de unidades de produção agrícola do Estado de São Paulo. LUPA (1995/1996). São Paulo: IEA, CATI, SAA, vol. 4, 1997, 1936 p.
17. SEBER, G.A.F. Multivariate Observations. Wiley, 1984. 686 p. ISBN 0471691216.
18. TAKEMURA, C.M.; CESAR- JR, R.M.; ARANTES, R.A.T.; COSTA, L.F.; HINGST-ZAHER, E.; BONATO, V.; REIS, S.F. Morphometrical data analysis using wavelets. Real-Time Imaging, 2004, vol.10, no. 4, p. 239-250.
19. VANHOUTTE, B.; PONS, M.N.; THOMAS, C.R.; LOUVEL, L. and VIVIER, H. Characterization of Penicillium chrysogenum physiology in submerged cultures by color and monochrome image analysis. Biotechnology and Bioengineering, 1995, vol. 48, no. 1, p. 1-11.
20. VINCENT, L. and SOILLE, P. Watersheds in digital spaces: An efficient algorithm based on immersion simulations. IEEE Trans. Pattern Analysis and Machine Intelligence, 1991, vol. 13, no. 3, p. 583-598.
21. th September, 2000, Barcelona, Spain). 2000, vol. 3, p. 652-655.