Scale-free network hidden in a collapsing polymer

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 72, Issue 5, 2005, Pages

  Kabakcioglu A ^a,b   Stella, A L ^b  

^a KOÇ UNIVERSITY   (Turkey)

^b UNIVERSITY OF PADOVA   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

CUTOFF DEGREE; GLOBULAR PHASE; INCOMPATIBILITY GRAPH; SCALE-FREE NETWORK;

GRAPH THEORY; PROTEINS;

POLYMERS;

EID: 28844460741     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.72.055102     Document Type: Article

References (35)

1. R. Albert and A. L. Barabási, Rev. Mod. Phys. RMPHAT 0034-6861 10.1103/RevModPhys.74.47 74, 47 (2002).
2. R. Cohen and S. Havlin, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.90.058701 90, 058701 (2003);
3. R. Albert, H. Jeong, and A. L. Barabási, Nature (London) NATUAS 0028-0836 10.1038/43601 401, 130 (1999).
4. R. Pastor-Satorras and A. Vespignani, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.86.3200 86, 3200 (2001);
5. C. Moore and M. E. J. Newman, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.61.5678 61, 5678 (2000).
6. R. Cohen, K. Erez, D. ben-Avraham, S. Havlin, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.86.3682 86, 3682 (2001);
7. D. S. Callaway, M. E. J. Newman, S. H. Strogatz, and D. J. Watts, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.85.5468 85, 5468 (2000);
8. R. Albert, H. Jeong, and A. L. Barabási, Nature (London) NATUAS 0028-0836 10.1038/35019019 406, 378 (2000).
9. S. Valverde, R. F. Cancho, and R. V. Solé, Europhys. Lett. EULEEJ 0295-5075 10.1209/epl/i2002-00248-2 60, 512 (2002).
10. J. P. K. Doye, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.88.238701 88, 238701 (2002).
11. M. Baiesi and S. S. Manna, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.68.047103 68, 047103 (2003).
12. K.-I. Goh, D.-S. Lee, B. Kahng, and D. Kim, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.91.148701 91, 148701 (2003);
13. C. P. Herrero, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.65.066110 65, 066110 (2002);
14. E. Almaas, R. V. Kulkarni, and D. Stroud, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.68.056105 68, 056105 (2003);
15. C. P. Herrero and M. Saboya, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.68.026106 68, 026106 (2003).
16. M. Rosvall, A. Trusina, P. Minnhagen, and K. Sneppen, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.94.028701, 94, 028701 (2004).
17. M. Vendruscolo, B. Subramanian, I. Kanter, E. Domany, and J. Lebowitz, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.59.977 59, 977 (1999).
18. A. Scala, L. A. N. Amaral, and M. Barthélémy, Europhys. Lett. EULEEJ 0295-5075 10.1209/epl/i2001-00457-7 55, 594 (2001).
19. C. Vanderzande, Lattice Models of Polymers (Cambridge University Press, Cambridge, 1996).
20. C. Haslinger and P. F. Stadler, Bull. Math. Biol. BMTBAP 0092-8240 10.1006/bulm.1998.0085 61, 437 (1999).
21. M. Baiesi, E. Orlandini, and A. L. Stella, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.87.070602 87, 070602 (2003).
22. A. KabakçIoǧlu and A. L. Stella, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.70.011802 70, 011802 (2004).
23. R. Nussinov and A. B. Jacobson, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 77, 6309 (1980).
24. M. Zuker and P. Stiegler, Nucleic Acids Res. NARHAD 0305-1048 9, 133 (1981).
25. R. Bundschuh and T. Hwa, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.83.1479 83, 1479 (1999).
26. J. L. Jacobsen, N. Read, and H. Saleur, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.93.038701 93, 038701 (2004).
27. S. Redner, A Guide to First-Passage Processes (Cambridge University Press, Cambridge, 2001).
28. B. Duplantier, J. Stat. Phys. JSTPBS 0022-4715 10.1007/BF01019770 54, 581 (1988).
29. B. Duplantier, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.71.4274 71, 4274 (1993).
30. Y. Kafri, D. Mukamel, and L. Peliti, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.85.4988 85, 4988 (2000).
31. L. Schäfer, C. von Ferber, U. Lehr, and B. Duplantier, Nucl. Phys. B NUPBBO 0550-3213 10.1016/0550-3213(92)90397-T 374, 473 (1992).
32. H.-P. Hsu, V. Mehra, W. Nadler, and P. Grassberger, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1522710 118, 444 (2003).
33. R. Metzler A. Hanke, P. G. Dommershes, Y. Kantor, and M. Karda. Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.88.188101 88, 188101 (2002).
34. B. Marcone, J. Phys. A JPHAC5 0305-4470 10.1088/0305-4470/38/1/L03 38, L 15 (2005).
35. A. R. Fersht, Curr. Opin. Struct. Biol. COSBEF 0959-440X 10.1016/S0959-440X(97)80002-4 7, 3 (1997).