Compaction of single-chain DNA by histone-inspired nanoparticles

Physical Review Letters

Volumn 95, Issue 22, 2005, Pages

  Zinchenko, Anatoly A ^a   Yoshikawa, Kenichi ^a   Baigl, Damien ^a,b  

^a KYOTO UNIVERSITY   (Japan)

^b ECOLE NORMALE SUPÉRIEURE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

DNA-HISTONE INTERACTION; DUPLEX DNA; SINGLE-CHAIN LEVEL;

AMINES; NANOSTRUCTURED MATERIALS; PARTICLE SIZE ANALYSIS; PHYSIOLOGY; POSITIVE IONS;

DNA;

CHROMATIN; DNA; HISTONE; NANOMATERIAL;

AUDIOVISUAL EQUIPMENT; CHEMISTRY; CHROMATIN; CONFORMATION; PARTICLE SIZE;

CHROMATIN; DNA; HISTONES; MODELS, STRUCTURAL; NANOSTRUCTURES; NUCLEIC ACID CONFORMATION; PARTICLE SIZE;

EID: 28844431927     PISSN: 00319007     EISSN: 10797114     Source Type: Journal    
DOI: 10.1103/PhysRevLett.95.228101     Document Type: Article

References (33)

1. R.D. Kornberg, Science 184, 868 (1974). SCIEAS 0036-8075
2. K. Luger, A.W. Mäder, R.K. Richmond, F.D. Sargent, and T.J. Richmond, Nature (London) NATUAS 0028-0836 389, 251 (1997). 10.1038/38444
3. R.R. Netz and J.-F. Joanny, Macromolecules 32, 9026 (1999). MAMOBX 0024-9297 10.1021/ma990264+
4. K.-K. Kunze and R.R. Netz, Phys. Rev. Lett. 85, 4389 (2000). PRLTAO 0031-9007 10.1103/PhysRevLett.85.4389
5. T.T. Nguyen and B.I. Shklovskii, J. Chem. Phys. 114, 5905 (2001). JCPSA6 0021-9606 10.1063/1.1355289
6. A.Y. Grosberg, T.T. Nguyen, and B.I. Shklovskii, Rev. Mod. Phys. 74, 329 (2002). RMPHAT 0034-6861 10.1103/RevModPhys.74.329
7. H. Schiessel, J. Phys. Condens. Matter 15, R699 (2003). JCOMEL 0953-8984 10.1088/0953-8984/15/19/203
8. M. Jonsson and P. Linse, J. Chem. Phys. 115, 10975 (2001). JCPSA6 0021-9606 10.1063/1.1417508
9. L.C. Gosule and J.A. Schellman, Nature (London) NATUAS 0028-0836 259, 333 (1976). 10.1038/259333a0
10. N.V. Hud and K.H. Downing, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 98, 14925 (2001). 10.1073/pnas.261560398
11. A.L. Olins and D.E. Olins, Science 183, 330 (1974). SCIEAS 0036-8075
12. F. Thoma, T. Koller, and A. Klug, J. Cell Biol. JCLBA3 0021-9525 83, 403 (1979). 10.1083/jcb.83.2.403
13. S.H. Leuba, G. Yang, C. Robert, B. Samori, K. van Holde, J. Zlatanova, and C. Bustamante, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 91, 11621 (1994).
14. V.A. Bloomfield, Curr. Opin. Struct. Biol. 6, 334 (1996). COSBEF 0959-440X 10.1016/S0959-440X(96)80052-2
15. K. Yoshikawa, M. Takahashi, V.V. Vasilevskaya, and A.R. Khokhlov, Phys. Rev. Lett. 76, 3029 (1996). PRLTAO 0031-9007 10.1103/PhysRevLett.76.3029
16. E. Raspaud, D. Durand, and F. Livolant, Biophys. J. 88, 392 (2005). BIOJAU 0006-3495 10.1529/biophysj.104.040113
17. E.C. Uberbacher, V. Ramakrishnan, D.E. Olins, and G.J. Bunick, Biochemistry BICHAW 0144-0578 22, 4916 (1983). 10.1021/bi00290a007
18. T.D. Yager, C.T. McMurray, and K.E. van Holde, Biochemistry BICHAW 0144-0578 28, 2271 (1989). 10.1021/bi00431a045
19. For a precise description, the role of translational entropy of counter-ions should be taken into account.
20. See, e.g., T. Iwaki and K. Yoshikawa, Europhys. Lett. 68, 113 (2004). EULEEJ 0295-5075 10.1209/epl/i2004-10171-0
21. J.R. Wenner, M.C. Williams, I. Rouzina, and V.A. Bloomfield, Biophys. J. 82, 3160 (2002). BIOJAU 0006-3495
22. T. Odijk, J. Polym. Sci. 15, 477 (1977). JPSCAU 0022-3832
23. J. Skolnick and M. Fixman, Macromolecules 10, 944 (1977). MAMOBX 0024-9297 10.1021/ma60059a011
24. R. Podgornik, P.L. Hansen, and V.A. Parsegian, J. Chem. Phys. 113, 9343 (2000). JCPSA6 0021-9606 10.1063/1.1319380
25. C.G. Baumann, S.B. Smith, V.A. Bloomfield, and C. Bustamante, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 94, 6185 (1997). 10.1073/pnas.94.12.6185
26. In a nucleosome, 147 base pairs of DNA (294 negative charges) wrap a histone octamer that contains 220 cationic lysine and arginine residues.
27. S.N. Khrapunov, A.I. Dragan, A.V. Sivolob, and A.M. Zagariya, Biochim. Biophys. Acta 1351, 213 (1997). BBACAQ 0006-3002
28. J.O. Rädler, I. Koltover, T. Salditt, and C.R. Safinya, Science 275, 810 (1997). SCIEAS 0036-8075 10.1126/science.275.5301.810
29. F. Caruso, E. Donath, and H. Möhwald, J. Phys. Chem. B 102, 2011 (1998). JPCBFK 1520-6106 10.1021/jp980198y
30. Y. Wang, K. Kimura, Q. Huang, P.L. Dubin, and W. Jaeger, Macromolecules 32, 7128 (1999). MAMOBX 0024-9297 10.1021/ma990972v
31. T.T. Nguyen and B.I. Shklovskii, Physica (Amsterdam) 293A, 324 (2001). PHYADX 0378-4371 10.1016/S0378-4371(01)00020-6
32. E.M. Mateescu, C. Jeppesen, and P. Pincus, Europhys. Lett. 46, 493 (1999). EULEEJ 0295-5075 10.1209/epl/i1999-00290-6
33. S.Y. Park, R.F. Bruinsma, and W.M. Gelbart, Europhys. Lett. 46, 454 (1999). EULEEJ 0295-5075 10.1209/epl/i1999-00284-x