Duplication processes in Saccharomyces cerevisiae haploid strains

Nucleic Acids Research

Volumn 33, Issue 19, 2005, Pages 6319-6326

  Schacherer, Joseph ^a   de Montigny, Jacky ^a   Welcker, Anne ^a   Souciet, Jean Luc ^a   Potier, Serge ^a  

^a UNIVERSITÉ DE STRASBOURG   (France)

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL DNA; RAD52 PROTEIN;

5' UNTRANSLATED REGION; ARTICLE; BACTERIUM TRANSFORMATION; CHROMOSOME REARRANGEMENT; COMPARATIVE GENOMIC HYBRIDIZATION; DNA SEQUENCE; ESCHERICHIA COLI; FUNGAL GENE; FUNGAL STRAIN; FUNGUS MUTANT; GENE DUPLICATION; HAPLOIDY; HOMOLOGOUS RECOMBINATION; NONHUMAN; PLASMID; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; SOUTHERN BLOTTING;

ASPARTATE CARBAMOYLTRANSFERASE; CARBAMOYL-PHOSPHATE SYNTHASE (GLUTAMINE-HYDROLYZING); CHROMOSOMES, FUNGAL; GENE DELETION; GENE DUPLICATION; GENES, FUNGAL; HAPLOIDY; MULTIENZYME COMPLEXES; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; FUNGI; SACCHAROMYCES CEREVISIAE;

EID: 28544439838     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gki941     Document Type: Article

References (30)

1. Ohno,S. (1970) Evolution by Gene Duplication. Springer, Berlin.
2. Zhang,J., Rosenberg,H.F. and Nei,M. (1998) Positive Darwinian selection after gene duplication in primate ribonuclease genes. Proc. Natl Acad. Sci. USA, 95, 3708-3713.
3. Dujon,B. (1996) Yeast genome project: What did we learn? Trends Genet., 12, 263-270.
4. Goffeau,A., Barrell,B.G., Bussey,H., Davis,R.W., Dujon,B., Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M. et al. (1996) Life with 6000 genes. Science, 274, 563-567.
5. Llorente,B., Durrens,P., Malpertuy,A., Aigle,M., Artiguenave,F., Blandin,G., Bolotin-Fukuhara,M., Bon,E., Brottier,P., Casaregola,S. et al. (2000) Genomic exploration of the hemiascomycetous yeasts: 20 evolution of gene redundancy compared to Saccharomyces cerevisiae. FEBS Lett., 487, 122-133.
6. Wolfe,K.H. and Shields,D.C. (1997) Molecular evidence for an ancient duplication of the entire yeast genome. Nature, 387, 708-713.
7. Kellis,M., Birren,B.W. and Lander,E.S. (2004) Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae. Nature, 428, 614-617.
8. Dietrich,F.S., Voegeli,S., Brachat,S., Lerch,A., Gates,K., Steiner,S., Mohr,C., Pohlmann,R., Luedi,P., Choi,S. et al. (2004) The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome. Science, 304, 304-307.
9. Schacherer,J., Tourrette,Y., Souciet,J.L., Potier,S. and De Montigny,J. (2004) Recovery of a function involving gene duplication by retroposition in Saccharomyces cerevisiae. Genome Res., 14, 1291-1297.
10. Bailey,J.A., Gu,Z., Clark,R.A., Reinert,K., Samonte,R.V., Schwartz,S., Adams,M.D., Myers,E.W., Li,P.W. and Eichler,E.E. (2002) Recent segmental duplications in the human genome. Science, 297, 1003-1007.
11. Koszul,R., Caburet,S., Dujon,B. and Fischer,G. (2004) Eucaryotic genome evolution though the spontaneous duplication of large chromosomal segments. EMBO J., 23, 234-243.
12. Hughes,T.R., Roberts,C.J., Dai,H., Jones,A.R., Meyer,M.R., Slade,D., Burchard,J., Dow,S., Ward,T.R., Kidd,M.J., Friend,S.H. and Marton,M.J. (2000) Widespread aneuploidy revealed by DNA microarray expression profiling. Nature Genet., 25, 333-337.
13. Roelants,F., Potier,S., Souciet,J.L. and de Montigny,J. (1995) Reactivation of the ATCase domain of the URA2 gene complex: A positive selection method for Ty insertions and chromosomal rearrangements in Saccharomyces cerevisiae. Mol. Gen. Genet., 246, 767-773.
14. Welcker,A.J., de Montigny,J., Potier,S. and Souciet,J.L. (2000) Involvement of very short DNA tandem repeats and the influence of the RAD52 gene on the occurrence of deletions in Saccharomyces cerevisiae. Genetics, 156, 549-557.
15. Bach,M.L., Roelants,F., de Montigny,J., Huang,M., Potier,S. and Souciet,J.L. (1995) Recovery of gene function by gene duplication in Saccharomyces cerevisiae. Yeast, 11, 169-177.
16. Wach,A., Brachat,A., Pohlmann,R. and Philippsen,P. (1994) New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae. Yeast, 10, 1793-1808.
17. Bonneaud,N., Ozier-Kalogeropoulos,O., Li,G.Y., Labouesse,M., Minvielle-Sebastia,L. and Lacroute,F. (1991) A family of low and high copy replicative, integrative and single-stranded S.cerevisiae/E.coli shuttle vectors. Yeast, 7, 609-615.
18. Becker,D.M. and Guarente,L. (1991) High-efficiency transformation of yeast by electroporation. Methods Enzymol., 194, 182-187.
19. Dower,W.J., Miller,J.F. and Ragsdale,C.W. (1988) High efficiency transformation of E.coli by high voltage electroporation. Nucleic Acids Res., 16, 6127-6145.
20. Hoffman,C.S. and Winston,F. (1987) A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli. Gene, 57, 267-272.
21. Sanger,F., Nicklen,S. and Coulson,A.R. (1977) DNA sequencing with chain-terminating inhibitors. Proc. Natl Acad. Sci. USA, 74, 5463-5467.
22. Carle,G.F. and Olson, M.V. (1985) An electrophoretic karyotype for yeast. Proc. Natl Acad. Sci. USA, 82, 3756-3760.
23. Zhang,J. (2003) Evolution by gene duplication: An update. Trends Ecol. Evol., 18, 292-298.
24. Eichler,E.E. (2001) Recent duplication, domain accretion and the dynamic mutation of the human genome. Trends Genet., 17, 661-669.
25. Lynch,M. (2002) Gene duplication and evolution. Science, 297, 945-947.
26. Bailey,J.A., Liu,G. and Eichler,E.E. (2003) An Alu transposition model for the origin and expansion of human segmental duplications. Am. J. Hum. Genet., 73, 823-834.
27. Fischer,G., James,S.A., Roberts,I.N., Oliver,S.G. and Louis,E.J. (2000) Chromosomal evolution in Saccharomyces. Nature, 405, 451-454.
28. Dunham,M.J., Badrane,H., Ferea,T., Adams,J., Brown,P.O., Rosenzweig,F. and Botstein,D. (2002) Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae. Proc. Natl Acad. Sci. USA, 99, 16144-16149.
29. Leh-Louis,V., Wirth,B., Potier,S., Souciet,J.L. and Despons,L. (2004) Expansion and contraction of the DUP240 multigene family in Saccharomyces cerevisiae populations. Genetics, 167, 1611-1619.
30. Kunes,S., Botstein,D. and Fox,M.S. (1990) Synapsis-mediated fusion of free DNA ends forms inverted dimer plasmids in yeast. Genetics, 124, 67-80.