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Volumn 6, Issue , 2005, Pages

Large-scale genetic variation of the symbiosis-required megaplasmid pSymA revealed by comparative genomic analysis of Sinorhizobium meliloti natural strains

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOTIDE; OLIGONUCLEOTIDE; TRANSPOSASE; BACTERIAL DNA;

EID: 27944466762     PISSN: 14712164     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-6-158     Document Type: Article
Times cited : (47)

References (49)
  • 2
    • 4544312317 scopus 로고    scopus 로고
    • Related Articles, The genome of alpha-proteobacteria: Complexity, reduction, diversity and fluidity
    • Teyssier C, Marchandin H, Jumas-Bilak E. Related Articles, The genome of alpha-proteobacteria : complexity, reduction, diversity and fluidity. Can J Microbiol 2004; 50:383-96.
    • (2004) Can. J. Microbiol. , vol.50 , pp. 383-396
    • Teyssier, C.1    Marchandin, H.2    Jumas-Bilak, E.3
  • 4
  • 5
    • 0025180428 scopus 로고
    • Microbial degradation of hydrocarbons in the environment
    • Leahy JG, Colwell RR. Microbial degradation of hydrocarbons in the environment. Microbiol Rev 1990; 54:305-15.
    • (1990) Microbiol. Rev. , vol.54 , pp. 305-315
    • Leahy, J.G.1    Colwell, R.R.2
  • 9
    • 0035859896 scopus 로고    scopus 로고
    • DNA/DNA hybridization to microarrays reveals gene-specific differences between closely related microbial genomes
    • Murray AE, Lies D, Li G, Nealson K, Zhou J, Tiedje JM. DNA/DNA hybridization to microarrays reveals gene-specific differences between closely related microbial genomes. Proc Natl Acad Sci U S A 2001; 98:9853-8.
    • (2001) Proc. Natl. Acad. Sci. U. S. A. , vol.98 , pp. 9853-9858
    • Murray, A.E.1    Lies, D.2    Li, G.3    Nealson, K.4    Zhou, J.5    Tiedje, J.M.6
  • 12
    • 0037830766 scopus 로고    scopus 로고
    • Genome-wide DNA microarray analysis of Francisella tularensis strains demonstrates extensive genetic conservation within the species but identifies regions that are unique to the highly virulent F. tularensis subsp. tularensis
    • Broekhuijsen M, Larsson P, Johansson A, Bystrom M, Eriksson U, Larsson E, Prior RG, Sjostedt A, Titball RW, Forsman M. Genome-wide DNA microarray analysis of Francisella tularensis strains demonstrates extensive genetic conservation within the species but identifies regions that are unique to the highly virulent F. tularensis subsp. tularensis. J Clin Microbiol 2003; 41:2924-31.
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 2924-2931
    • Broekhuijsen, M.1    Larsson, P.2    Johansson, A.3    Bystrom, M.4    Eriksson, U.5    Larsson, E.6    Prior, R.G.7    Sjostedt, A.8    Titball, R.W.9    Forsman, M.10
  • 15
    • 2942571207 scopus 로고    scopus 로고
    • Extensive genomic diversity in pathogenic Escherichia coli and Shigella Strains revealed by comparative genomic hybridization microarray
    • Fukiya S, Mizoguchi H, Tobe T, Mori H. Extensive genomic diversity in pathogenic Escherichia coli and Shigella Strains revealed by comparative genomic hybridization microarray. J Bacteriol 2004; 186:3911-21.
    • (2004) J. Bacteriol. , vol.186 , pp. 3911-3921
    • Fukiya, S.1    Mizoguchi, H.2    Tobe, T.3    Mori, H.4
  • 17
    • 1342325443 scopus 로고    scopus 로고
    • Bordetella species are distinguished by patterns of substantial gene loss and host adaptation
    • Cummings CA, Brinig MM, Lepp PW, van de Pas S, Relman DA. Bordetella species are distinguished by patterns of substantial gene loss and host adaptation. J Bacteriol 2004; 186:1484-92.
    • (2004) J. Bacteriol. , vol.186 , pp. 1484-1492
    • Cummings, C.A.1    Brinig, M.M.2    Lepp, P.W.3    van de Pas, S.4    Relman, D.A.5
  • 18
    • 4844230028 scopus 로고    scopus 로고
    • Microarray-based genomic surveying of gene polymorphisms in Chlamydia trachomatis
    • Brunelle BW, Nicholson TL, Stephens RS. Microarray-based genomic surveying of gene polymorphisms in Chlamydia trachomatis. Genome Biol 2004; 5:R42.
    • (2004) Genome Biol. , vol.5
    • Brunelle, B.W.1    Nicholson, T.L.2    Stephens, R.S.3
  • 19
    • 0042023306 scopus 로고    scopus 로고
    • Differences in gene content among Salmonella enterica serovar typhi isolates
    • Boyd EF, Porwollik S, Blackmer F, McClelland M. Differences in gene content among Salmonella enterica serovar typhi isolates. J Clin Microbiol 2003; 41:3823-8.
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 3823-3828
    • Boyd, E.F.1    Porwollik, S.2    Blackmer, F.3    McClelland, M.4
  • 21
    • 0842326197 scopus 로고    scopus 로고
    • Comparison of Campylobacter jejuni isolates implicated in Guillain-Barre syndrome and strains that cause enteritis by a DNA microarray
    • Leonard EE 2nd, Tompkins LS, Falkow S, Nachamkin I. Comparison of Campylobacter jejuni isolates implicated in Guillain-Barre syndrome and strains that cause enteritis by a DNA microarray. Infect Immun 2004; 72:1199-203.
    • (2004) Infect. Immun. , vol.72 , pp. 1199-1203
    • Leonard II, E.E.1    Tompkins, L.S.2    Falkow, S.3    Nachamkin, I.4
  • 23
    • 3242745933 scopus 로고    scopus 로고
    • Comparative whole-genome hybridization reveals genomic islands in Brucella species
    • Rajashekara G, Glasner JD, Glover DA, Splitter GA. Comparative whole-genome hybridization reveals genomic islands in Brucella species. J Bacteriol 2004; 186:5040-51.
    • (2004) J. Bacteriol. , vol.186 , pp. 5040-5051
    • Rajashekara, G.1    Glasner, J.D.2    Glover, D.A.3    Splitter, G.A.4
  • 25
    • 0002995316 scopus 로고    scopus 로고
    • Soil Biology of the Rhizobiaceae
    • Editors Spaink, HP, Kondorosi A, Hooykaas PJJ. Dordrecht, The Netherlands: Kluwer Academic Publishers
    • Sadowsky, M.J., and Graham, P.H. Soil Biology of the Rhizobiaceae. In The Rhizobiaceae. Molecular Biology of Plant Associated Bacteria. Editors Spaink, HP, Kondorosi A, Hooykaas PJJ. Dordrecht, The Netherlands: Kluwer Academic Publishers. 1998: 155-172
    • (1998) The Rhizobiaceae. Molecular Biology of Plant Associated Bacteria , pp. 155-172
    • Sadowsky, M.J.1    Graham, P.H.2
  • 26
    • 0027508358 scopus 로고
    • Physical map of the genome of Rhizobium meliloti 1021
    • Honeycutt RJ, McClelland M, Sobral BW. Physical map of the genome of Rhizobium meliloti 1021. J Bacteriol 1993; 175:6945-52.
    • (1993) J. Bacteriol. , vol.175 , pp. 6945-6952
    • Honeycutt, R.J.1    McClelland, M.2    Sobral, B.W.3
  • 27
    • 0021950722 scopus 로고
    • Rhizobium meliloti carries two megaplasmids
    • Banfalvi Z, Kondorosi E, Kondorosi A. Rhizobium meliloti carries two megaplasmids. Plasmid 1985; 13:129-38.
    • (1985) Plasmid , vol.13 , pp. 129-138
    • Banfalvi, Z.1    Kondorosi, E.2    Kondorosi, A.3
  • 31
    • 0019838599 scopus 로고
    • Location of nodulation and nitrogen fixation genes on a high molecular weight plasmid of R. meliloti
    • Banfalvi Z, Sakanyan V, Koncz C, Kiss A, Dusha I, Kondorosi A. Location of nodulation and nitrogen fixation genes on a high molecular weight plasmid of R. meliloti. Mol Gen Genet 1981; 184:318-25.
    • (1981) Mol. Gen. Genet. , vol.184 , pp. 318-325
    • Banfalvi, Z.1    Sakanyan, V.2    Koncz, C.3    Kiss, A.4    Dusha, I.5    Kondorosi, A.6
  • 32
    • 0019771843 scopus 로고
    • Genes controlling early and late functions in symbiosis are located on a megaplasmid in Rhizobium meliloti
    • Rosenberg C, Boistard P, Denarie J, Casse-Delbart F. Genes controlling early and late functions in symbiosis are located on a megaplasmid in Rhizobium meliloti. Mol Gen Genet 1981; 184:326-33.
    • (1981) Mol. Gen. Genet. , vol.184 , pp. 326-333
    • Rosenberg, C.1    Boistard, P.2    Denarie, J.3    Casse-Delbart, F.4
  • 36
    • 0035106359 scopus 로고    scopus 로고
    • Genetic diversity of Sinorhizobium populations recovered from different medicago varieties cultivated in Tunisian soils
    • Jebara M, Mhamdi R, Aouani ME, Ghrir R, Mars M. Genetic diversity of Sinorhizobium populations recovered from different medicago varieties cultivated in Tunisian soils. Can J Microbiol 2001; 47:139-47.
    • (2001) Can. J. Microbiol. , vol.47 , pp. 139-147
    • Jebara, M.1    Mhamdi, R.2    Aouani, M.E.3    Ghrir, R.4    Mars, M.5
  • 37
    • 0029999644 scopus 로고    scopus 로고
    • Genetic diversity of an Italian Rhizobium meliloti population from different Medicago sativa varieties
    • Paffetti D, Scotti C, Gnocchi S, Fancelli S, Bazzicalupo M. Genetic diversity of an Italian Rhizobium meliloti population from different Medicago sativa varieties. Appl Environ Microbiol 1996 ; 62:2279-85.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2279-2285
    • Paffetti, D.1    Scotti, C.2    Gnocchi, S.3    Fancelli, S.4    Bazzicalupo, M.5
  • 39
    • 0029133590 scopus 로고
    • The insertion sequence element ISRm2011-2 belongs to the IS630-Tcl family of transposable elements and is abundant in Rhizobium meliloti
    • Selbitschka W, Arnold W, Jording D, Kosier B, Toro N, Puhler A. The insertion sequence element ISRm2011-2 belongs to the IS630-Tcl family of transposable elements and is abundant in Rhizobium meliloti. Gene 1995;163:59-64.
    • (1995) Gene , vol.163 , pp. 59-64
    • Selbitschka, W.1    Arnold, W.2    Jording, D.3    Kosier, B.4    Toro, N.5    Puhler, A.6
  • 40
    • 0032703005 scopus 로고    scopus 로고
    • ISRm10: A new insertion sequence of Sinorhizobium meliloti: Nucleotide sequence and geographic distribution
    • Biondi EG, Fancelli S, Bazzicalupo M. ISRm10: a new insertion sequence of Sinorhizobium meliloti: nucleotide sequence and geographic distribution. FEMS Microbiol Lett 1999; 181:171-6.
    • (1999) FEMS Microbiol. Lett. , vol.181 , pp. 171-176
    • Biondi, E.G.1    Fancelli, S.2    Bazzicalupo, M.3
  • 41
    • 0042659544 scopus 로고    scopus 로고
    • IS Rm31, a new insertion sequence of the IS 66 family in Sinorhizobium meliloti
    • Biondi EG, Femia AP, Favilli F, Bazzicalupo M. IS Rm31, a new insertion sequence of the IS 66 family in Sinorhizobium meliloti. Arch Microbiol 2003;180:118-26.
    • (2003) Arch. Microbiol. , vol.180 , pp. 118-126
    • Biondi, E.G.1    Femia, A.P.2    Favilli, F.3    Bazzicalupo, M.4
  • 42
    • 4544275338 scopus 로고    scopus 로고
    • Global transcriptional analysis of the phosphate starvation response in Sinorhizobium meliloti strains 1021 and 2011
    • Krol E, Becker A. Global transcriptional analysis of the phosphate starvation response in Sinorhizobium meliloti strains 1021 and 2011. Mol Genet Genomics 2004 ; 272:1-17.
    • (2004) Mol. Genet. Genomics , vol.272 , pp. 1-17
    • Krol, E.1    Becker, A.2
  • 43
    • 2942689400 scopus 로고    scopus 로고
    • Shaping bacterial genomes with integrative and conjugative elements
    • Burrus V, Waldor MK. Shaping bacterial genomes with integrative and conjugative elements. Res Microbiol. 2004; 155:376-86.
    • (2004) Res. Microbiol. , vol.155 , pp. 376-386
    • Burrus, V.1    Waldor, M.K.2
  • 44
    • 0034038755 scopus 로고    scopus 로고
    • Megaplasmid pRme2011a of Sinorhizobium meliloti is not required for viability
    • Oresnik IJ, Liu SL, Yost CK, Hynes MF. Megaplasmid pRme2011a of Sinorhizobium meliloti is not required for viability. J Bacteriol 2000;182:3582-6.
    • (2000) J. Bacteriol. , vol.182 , pp. 3582-3586
    • Oresnik, I.J.1    Liu, S.L.2    Yost, C.K.3    Hynes, M.F.4
  • 47
    • 1842607847 scopus 로고    scopus 로고
    • A language and environment for statistical computing
    • R Development Core Team R R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-00-3, URL
    • R Development Core Team 2004. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-00-3, URL http://www.R-project.org.
    • (2004)
  • 48
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
    • Article 3
    • Smyth, G.K. 2004. Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Statistical Applications in Genetics and Molecular Biology 3, No. 1, Article 3.
    • (2004) Statistical Applications in Genetics and Molecular Biology , vol.3 , Issue.1
    • Smyth, G.K.1
  • 49
    • 0003419795 scopus 로고
    • Distribution-Free Statistical Tests
    • New Jersey: Prentice Hall
    • Bradley, J.V. 1968. Distribution-Free Statistical Tests, New Jersey: Prentice Hall
    • (1968)
    • Bradley, J.V.1


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