Identification of human and rat FAD-AMP lyase (cyclic FMN forming) as ATP-dependent dihydroxyacetone kinases

Biochemical and Biophysical Research Communications

Volumn 338, Issue 4, 2005, Pages 1682-1689

  Cabezas, Alicia ^a   Costas, María Jesús ^a   Pinto, Rosa María ^a   Couto, Ana ^a   Cameselle, José Carlos ^a  

^a UNIVERSITY OF EXTREMADURA   (Spain)

Author keywords

Cloning; Cyclic FMN; Dihydroxyacetone; Dihydroxyacetone kinase; Dual activity protein; FAD; Flavin nucleotide; FMN cyclase; Peptide mass fingerprinting

Indexed keywords

ADENOSINE TRIPHOSPHATE; COMPLEMENTARY DNA; DIHYDROXYACETONE KINASE; ENZYME; FLAVINE ADENINE NUCLEOTIDE ADENOSINE PHOSPHATE LYASE; FLAVINE MONONUCLEOTIDE CYCLASE; LIVER EXTRACT; UNCLASSIFIED DRUG;

ANIMAL TISSUE; ARTICLE; CITROBACTER FREUNDII; CONTROLLED STUDY; DNA MICROARRAY; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME INHIBITION; ENZYME PURIFICATION; ENZYME STRUCTURE; ENZYME SUBSTRATE; GENE AMPLIFICATION; GENETIC CONSERVATION; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PEPTIDE MAPPING; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTEIN EXPRESSION; RAT; SINGLE NUCLEOTIDE POLYMORPHISM; STRUCTURAL HOMOLOGY;

ADENOSINE TRIPHOSPHATE; AMINO ACID SEQUENCE; ANIMALS; CLONING, MOLECULAR; DIHYDROXYACETONE; FLAVIN MONONUCLEOTIDE; FLAVIN-ADENINE DINUCLEOTIDE; HUMANS; LIVER; MOLECULAR SEQUENCE DATA; PHOSPHORUS-OXYGEN LYASES; PHOSPHOTRANSFERASES (ALCOHOL GROUP ACCEPTOR); RATS; RECOMBINANT PROTEINS; SEQUENCE ALIGNMENT;

ANIMALIA; CITROBACTER FREUNDII; MAMMALIA;

EID: 27844608412     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2005.10.142     Document Type: Article

References (31)

1. m FMN cyclase in rat liver Biochem. J. 330 1998 881 888
2. A. Cabezas, R.M. Pinto, F.J. Fraiz, J. Canales, S. González- Santiago, and J.C. Cameselle Purification, characterization, and substrate and inhibitor structure-activity studies of rat liver FAD-AMP lyase (cyclizing): preference for FAD and specificity for splitting ribonucleoside diphosphate-X into ribonucleotide and a five-atom cyclic phosphodiester of X, either a monocyclic compound or a cis-bicyclic phosphodiester-pyranose fusion Biochemistry 40 2001 13710 13722
3. J. Canales, A. Cabezas, R.M. Pinto, and J.C. Cameselle Fluorimetric HPLC detection of endogenous riboflavin 4′,5′-cyclic phosphate in rat liver at nanomolar concentrations Anal. Biochem. 341 2005 214 219
4. K. Yamano, H. Saito, Y. Ogasawara, S. Fujii, H. Yamada, H. Shirahama, and H. Kawai The autofluorescent substance in the posterior flagellum of the brown alga Scytosiphon lomentaria Z. Natursforsch. 51 1996 155 159
5. H.S. Forrest, and A.R. Todd Nucleotides. Part V. Riboflavin-5′ phosphate J. Chem. Soc. 1950 3295 3299
6. F.M. Huennekens, D.R. Sanadi, E. Dimant, and A.I. Schepartz The occurrence of a new flavin dinucleotide (FAD-X) J. Am. Chem. Soc. 75 1953 3611 3612
7. A. Gliszczynska, and A. Koziolowa Chromatographic determination of flavin derivatives in baker's yeast J. Chromatogr. A 822 1998 59 66
8. A. Gliszczynska-Swiglo, and A. Koziolowa Chromatographic determination of riboflavin and its derivatives in food J. Chromatogr. A 881 2000 285 297
9. 2+ in the absence of riboflavin 5′-phosphate cyclase Anal. Biochem. 268 1999 409 411
10. P. Nielsen, P. Rauschenbach, and A. Bacher Phosphates of riboflavin and riboflavin analogs: a reinvestigation by high-performance liquid chromatography Anal. Biochem. 130 1983 359 368
11. L. Davis The structure of dihydroxyacetone in solution Biorg. Chem. 2 1973 197 201
12. J. Norbeck, and A. Blomberg Metabolic and regulatory changes associated with growth of Saccharomyces cerevisiae in 1. 4 M sodium chloride. Evidence for osmotic induction of glycerol dissimilation via the dihydroxyacetone pathway J. Biol. Chem. 272 1997 5544 5554
13. C.R. Jiménez, L. Huang, Y. Qiu, and A.L. Burlingame Searching sequence databases over the internet: protein identification using MS-Fit J.E. Coligan B.M. Dunn D.W. Speicher P.T. Wingfield Current Protocols in Protein Science 1998 John Wiley New York 16.5.1 16.5.6
14. R.L. Strausberg, E.A. Feingold, L.H. Grouse, J.G. Derge, R.D. Klausner, F.S. Collins, L. Wagner, C.M. Shenmen, G.D. Schuler, S.F. Altschul, B. Zeeberg, K.H. Buetow, C.F. Schaefer, N.K. Bhat, R.F. Hopkins, H. Jordan, T. Moore, S.I. Max, J. Wang, F. Hsieh, L. Diatchenko, K. Marusina, A.A. Farmer, G.M. Rubin, L. Hong, M. Stapleton, M.B. Soares, M.F. Bonaldo, T.L. Casavant, T.E. Scheetz, M.J. Brownstein, T.B. Usdin, S. Toshiyuki, P. Carninci, C. Prange, S.S. Raha, N.A. Loquellano, G.J. Peters, R.D. Abramson, S.J. Mullahy, S.A. Bosak, P.J. McEwan, K.J. McKernan, J.A. Malek, P.H. Gunaratne, S. Richards, K.C. Worley, S. Hale, A.M. Garcia, L.J. Gay, S.W. Hulyk, D.K. Villalon, D.M. Muzny, E.J. Sodergren, X. Lu, R.A. Gibbs, J. Fahey, E. Helton, M. Ketteman, A. Madan, S. Rodrigues, A. Sanchez, M. Whiting, A. Madan, A.C. Young, Y. Shevchenko, G.G. Bouffard, R.W. Blakesley, J.W. Touchman, E.D. Green, M.C. Dickson, A.C. Rodriguez, J. Grimwood, J. Schmutz, R.M. Myers, Y.S. Butterfield, M.I. Krzywinski, U. Skalska, D.E. Smailus, A. Schnerch, J.E. Schein, S.J. Jones, and M.A. Marra Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences Proc. Natl. Acad. Sci. USA 99 2002 16899 16903
15. S.T. Sherry, M. Ward, and K. Sirotkin dbSNP-Database for single nucleotide polymorphisms and other classes of minor genetic variation Genome Res. 9 1999 677 679
16. S.T. Sherry, M.-H. Ward, M. Kholodov, J. Baker, L. Phan, E.M. Smigielski, and K. Sirotkin dbSNP: the NCBI database of genetic variation Nucleic Acids Res. 29 2001 308 311
17. G. Scola-Nagelschneider, and P. Hemmerich Synthesis, separation, identification and interconversion of riboflavin phosphates and their acetyl derivatives: a reinvestigation Eur. J. Biochem. 66 1976 567 577
18. S.F. Altschul, T.L. Madden, A.A. Schäffer, J. Zhang, Z. Zhang, W. Miller, and D.J. Lipman Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res. 25 1997 3389 3402
19. J.D. Thompson, T.J. Gibson, and D.G. Higgins Multiple sequence alignment using ClustalW and ClustalX A.D. Baxevanis D.B. Davison R.D.M. Page G.A. Petsko L.D. Stein G.D. Stormo Current Protocols in Bioinformatics 2003 John Wiley New York 2.3.1 2.3.22
20. S. Herz, K. Kis, A. Bacher, and F. Rohdich A tomato enzyme catalyzing the phosphorylation of 3,4-dihydroxy-2-butanone Phytochemistry 60 2002 3 11
21. M. Molin, J. Norbeck, and A. Blomberg Dihydroxyacetone kinases in Saccharomyces cerevisiae are involved in detoxification of dihydroxyacetone J. Biol. Chem. 278 2003 1415 1423
22. R. Daniel, K. Stuertz, and G. Gottschalk Biochemical and molecular characterization of the oxidative branch of glycerol utilization by Citrobacter freundii J. Bacteriol. 177 1995 4392 4401
23. C. Siebold, I. Arnold, L.F. Garcia-Alles, U. Baumann, and B. Erni Crystal structure of the Citrobacter freundii dihydroxyacetone kinase reveals and eight-stranded α-helical barrel ATP-binding domain J. Biol. Chem. 278 2003 48236 48244
24. S. Cheek, K. Ginalski, H. Zhang, and N.V. Grishin A comprehensive update of the sequence and structure classification of kinases BMC Struct. Biol. 5 2005 6
25. P.E. Borondy, and J.M. Weller Effect of chlorothiazide on rat liver glucokinase, hexokinase and dihydroxyacetone kinase activities Proc. Soc. Exp. Biol. Med. 118 1965 938 940
26. B.T. Jenkins, and A.K. Hajra Glycerol kinase and dihydroxyacetone kinase in rat brain J. Neurochem. 26 1976 377 385
27. C. Gancedo, A. Llobell, J.C. Ribas, and F. Luchi Isolation and characterization of mutants from Schyzosaccharomyces pombe defective in glycerol catabolism Eur. J. Biochem. 159 1986 171 174
28. W. Wang, J. Sun, M. Hartlep, W.-D. Deckwer, and A.-P. Zeng Combined use of proteomic analysis and enzyme activity assays for metabolic pathway analysis of glycerol fermentation by Klebsiella pneumoniae Biotechnol. Bioeng. 83 2003 525 536
29. E.R.B. McCabe Disorders of glycerol metabolism C. Scriver A. Beaudet W. Sly D. Valle B. Childs B. Vogelstein The Metabolic and Molecular Bases of Inherited Disease 2001 McGraw-Hill New York 2217 2237
30. J.L. Ivy Effect of pyruvate and dihydroxyacetone on metabolism and aerobic endurance capacity Med. Sci. Sports Exer. 30 1998 837 843
31. T. Taguchi, S. Murase, and I. Miwa Glyceraldehyde metabolism in human erythrocytes in comparison with that of glucose and dihydroxyacetone Cell Biochem. Funct. 20 2002 223 226