Comparative sequence analysis of the large polymerase protein (L) gene of peste-des-petits ruminants (PPR) vaccine virus of Indian origin

Archives of Virology

Volumn 150, Issue 12, 2005, Pages 2467-2481

  Muthuchelvan, D ^a   Sanyal, A ^b   Singh, R P ^c   Hemadri, D ^b   Sen, A ^c   Sreenivasa, B P ^c   Singh, R K ^c   Bandyopadhyay, S K ^d  

^a CENTRAL INSTITUTE OF FISHERIES TECHNOLOGY   (India)

^b Indian Veterinary Research Institute Campus   (India)

^c INDIAN VETERINARY RESEARCH INSTITUTE   (India)

^d Animal Husbandry Commissioner   (India)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS PROTEIN; VIRUS VACCINE;

3' UNTRANSLATED REGION; AMINO ACID SEQUENCE; ANIMAL DISEASE; ARTICLE; CHEMISTRY; CLASSIFICATION; COMPARATIVE STUDY; GENETICS; MEASLES VIRUS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PROTEIN TERTIARY STRUCTURE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; VIROLOGY; VIRUS GENE;

3' UNTRANSLATED REGIONS; AMINO ACID SEQUENCE; GENES, VIRAL; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PESTE-DES-PETITS-RUMINANTS; PESTE-DES-PETITS-RUMINANTS VIRUS; PHYLOGENY; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE HOMOLOGY, NUCLEIC ACID; VIRAL PROTEINS; VIRAL VACCINES;

ANIMALIA; CANINE DISTEMPER VIRUS; MORBILLIVIRUS; PARAMYXOVIRIDAE; PESTE-DES-PETITS-RUMINANTS VIRUS;

EID: 27844537917     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-005-0596-8     Document Type: Article

References (38)

1. EME Abu-Elzein MM Hassanien AI Al-Afaleq MA Abd-Elhadi FMI Housawi 1990 Isolation of peste des petits ruminants from goats in Saudi Arabia. Vet Rec 127 309 310
2. D Bailey A Banyard P Dash A Ozkul T Barrett 2005 Full genome sequence of peste des petits ruminants virus, a member of the Morbillivirus genus. Virus Res 110 119 124
3. MD Baron T Barrett 1995a The sequence of the N and L genes of rinderpest virus, and the 5′ and 3′ extra-genic sequences: the completion of the genome sequence of the virus. Vet Microbiol 44 175 185
4. MD Baron T Barrett 1995b Sequencing and analysis of the nucleocapsid (N) and polymerase (L) genes and the terminal extragenic domains of the vaccine strain of rinderpest virus. J Gen Virol 76 593 602
5. MD Baron L Goatley T Barrett 1994 Cloning and sequence analysis of the matrix (M) protein gene of rinderpest virus and evidence for another bovine morbillivirus. Virology 200 121 129
6. T Barrett C Amarel-Doel RP Kitching A Gusev 1993 Use of the polymerase chain reaction in differentiating rinderpest field virus and vaccine virus in the same animals. Rev Sci Tech 12 865 872
7. BM Blumberg JC Crowley JI Silverman J Menonna SD Cook PC Dowling 1988 Measles virus L protein evidences elements of ancestral RNA polymerase. Virology 164 487 497
8. JC Crowley PC Dowling J Menonna JI Silverman D Schuback SD Cook BM Blumberg 1988 Sequence variability and function of measles virus 3′ and 5′ ends and intercistronic regions. Virology 164 498 506
9. P Dhar BP Sreenivasa T Barrett M Corteyn RP Singh SK Bandyopadhyay 2002 Recent epidemiology of peste des petits ruminants virus (PPRV). Vet Microbiol 88 153 159
10. A Diallo T Barrett M Barbron G Meyer PC Lefevre 1994 Cloning of the nucleocapsid protein gene of peste-des-petits-ruminants virus: relationship to other morbilliviruses. J Gen Virol 75 233 237
11. A Diallo 1990 Morbillivirus group: genome organization and proteins. Vet Microbiol 23 155 163
12. A Diallo T Barrett M Barbron M Shaila SM Subbarao WP Taylor 1989 Differentiation of rinderpest and peste des petits ruminants viruses using specific cDNA clones. J Virol Methods 23 127 136
13. J Felsenstein 1985 Confidence limits on phylogenies: an approach using bootstrap. Evolution 39 783 791
14. M Forsyth T Barrett 1995 Detection and differentiation of rinderpest and peste des petits ruminants viruses in diagnostic and experimental samples by polymerase chain reaction using P and F gene-specific primers. Virus Res 39 151 163
15. A Haffar G Libeau A Moussa M Cecile A Diallo 1999 The matrix protein gene sequence analysis reveals close relationship between peste des petits ruminants virus (PPRV) and dolphin morbillivirus. Virus Res 64 69 75
16. SB Hedges 1992 The number of replications needed for accurate estimation of the bootstrap P value in phylogenetic studies. Mol Biol Evol 9 366 369
17. SA Jablonski M Luo CD Morrow 1991 Enzymatic activity of poliovirus RNA polymerase mutants with single amino acid changes in the conserved YGDD amino acid motif. J Virol 65 4565 4572
18. VB Joshi KB Nagal M Sharma RC Katoch M Batta AK Sharma M Sharma 1996 Peste des petits ruminants (PPR) among Gaddi sheep and goats in Himachal Pradesh. Indian J Anim Sci 66 1126 1127
19. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: Molecular Evolutionary Genetics Analysis software, Arizona State University, Tempe, Arizona, USA
20. PC Lefevre A Diallo 1990 Peste des petitis ruminants. Rev Sci Tech 9 951 965
21. R Linding RB Russell V Neduva TJ Gibson 2003 GlobPlot: exploring protein sequences for globularity and disorder. Nucleic Acids Res 31 3701 3708
22. M Mahapatra S Parida BG Egziabher A Diallo T Barrett 2003 Sequence analysis of the phosphoprotein gene of peste des petits ruminants (PPR) virus: editing of the gene transcript. Virus Res 96 85 98
23. SJ [tmp] McCullough F [tmp] McNeilly GM Allan S Kennedy JA Smyth SL Cosby S [tmp] McQuaid BK Rima 1991 Isolation and characterisation of a porpoise morbillivirus. Arch Virol 118 247 252
24. MA Mcllhatton MD Curran BK Rima 1997 Nucleotide sequence analysis of the large (L) genes of phocine distemper virus and canine distemper virus (corrected sequence). J Gen Virol 78 571 576
25. N Nagarajan G Yona 2004 Automatic prediction of domains from sequence information using hybrid learning system. Bioinformatics 20 1335 1360
26. YP Nanda A Chatterjee AK Purohit A Diallo K Innui RN Sharma G Libeau JA Thevasagayam A Bruning RP Kiching J Anderson T Barrett WP Taylor 1996 The isolation of peste des petits ruminants virus from Northern India. Vet Microbiol 51 207 216
27. O Poch I Sauvaget M Delarue N Tordo 1989 Identification of four conserved motifs among the RNS-dependent polymerase encoding elements. EMBO J 8 3867 3874
28. O Poch BM Blumberg L Bougueleret N Tordo 1990 Sequence comparison of five polymerases (L proteins) of unsegmented negative-strand RNA viruses: theoretical assignment of functional domains. J Gen Virol 71 1153 1162
29. J Sarkar BP Sreenivasa RP Singh P Dhar SK Bandyopadhyay 2003 Comparative efficacy of various chemical stabilizers on the thermostability of a live-attenuated peste des petits ruminants (PPR) vaccine. Vaccine 21 4728 4735
30. MJ Schnell KK Conzelmann 1995 Polymerase activity of in vitro mutated rabies virus L protein. Virology 214 522 530
31. MS Shaila V Purushothaman D Bhavasar K Venugopal RA Venkatesan 1989 Peste des petits ruminants of sheep in India. Vet Rec 125 602
32. MS Shaila D Shamaki MA Forsyth A Diallo L Goatley RP Kitching T Barrett 1996 Geogrphic distribution of peste des petits ruminants viruses. Virus Res 43 149 153
33. MS Sidhu JP Menonna SD Cook PC Dowling SA Udem 1993 Canine distemper virus L gene: sequence and comparison with related viruses. Virology 193 50 65
34. RP Singh BP Sreenivasa P Dhar LC Shah SK Bandyopadhyay 2004 Development of a monoclonal antibody based competitive-ELISA for detection and titration of antibodies to peste des petits ruminants (PPR) virus. Vet Microbiol 98 3 15
35. Sreenivasa BP, Dhar P, Singh RP, Bandyopadhyay SK (2000) Evaluation of an indigenously developed homologous live-attenuated cell culture vaccine against peste des petits ruminants of small ruminants. In: Proc, XX Annual Conference of Indian Association of Veterinary Microbiologists, Immunologists and Specialists in Infectious Diseases and National Symposium on Trends in Vaccinology for Animal Diseases. GBPUA&T, Pantnagar, India, 14-16 October 2000
36. DS Stec MG Hill III PL Collins 1991 Sequence analysis of the polymerase L gene of human respiratory syncytial virus and the predicted phylogeny of nonsegmented negative-strand viruses. Virology 183 273 287
37. C Stem 1993 An economic analysis of the prevention of peste des petits ruminants in Nigerian goats. Prev Vet Med 16 141 150
38. Van Regenmortel MHV, Fauquet CM, Bishop DHL (2000) Virus taxonomy. Seventh Report of the International committee on taxonomy of Viruses. Academic Press, San Diego