Rapid detection of Mycobacterium tuberculosis in respiratory samples by transcription-reverse transcription concerted reaction with an automated system

Journal of Clinical Microbiology

Volumn 43, Issue 11, 2005, Pages 5435-5439

  Takakura, Shunji ^a   Tsuchiya, Shigeo ^b   Isawa, Yuichi ^b   Yasukawa, Kiyoshi ^b,e   Hayashi, Toshinori ^b   Tomita, Motohisa ^c   Suzuki, Katsuhiro ^c   Hasegawa, Tatsuro ^d   Tagami, Takanori ^d   Kurashima, Atsuyuki ^d   Ichiyama, Satoshi ^a  

^a KYOTO UNIVERSITY GRADUATE SCHOOL OF MEDICINE   (Japan)

^b TOSOH CORPORATION   (Japan)

^c NATIONAL HOSPITAL ORGANIZATION KINKI CHUO CHEST MEDICAL CENTER   (Japan)

^d TOKYO NATIONAL HOSPITAL   (Japan)

^e KYOTO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

ACCURACY; ARTICLE; BACTERIUM CULTURE; BACTERIUM DETECTION; DIAGNOSTIC KIT; GENE AMPLIFICATION; HUMAN; LABORATORY AUTOMATION; LUNG TUBERCULOSIS; MICROBIOLOGICAL EXAMINATION; MYCOBACTERIUM AVIUM; MYCOBACTERIUM KANSASII; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESPIRATORY SAMPLE; RNA SEQUENCE; SAMPLE; SPUTUM EXAMINATION; TRANSCRIPTION REVERSE TRANSCRIPTION CONCERTED METHOD;

BACTERIOLOGICAL TECHNIQUES; EVALUATION STUDIES; FLUORESCENCE; HUMANS; INTERCALATING AGENTS; MYCOBACTERIUM TUBERCULOSIS; NUCLEIC ACID AMPLIFICATION TECHNIQUES; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SENSITIVITY AND SPECIFICITY; SPUTUM; TUBERCULOSIS, PULMONARY;

BACTERIA (MICROORGANISMS); MYCOBACTERIUM AVIUM; MYCOBACTERIUM KANSASII; MYCOBACTERIUM TUBERCULOSIS; MYCOBACTERIUM TUBERCULOSIS COMPLEX;

EID: 27744593430     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.43.11.5435-5439.2005     Document Type: Article

References (19)

1. Fadda, G., F. Ardito, M. Sanguinetti, B. Posteraro, L. Ortona, C. Chezzi, L. Polonelli, G. Dettori, S. Conti, F. Fanti, and C. Galli. 1998. Evaluation of the Abbott LCx Mycobacterium tuberculosis assay in comparison with culture methods in selected Italian patients. New Microbiol. 21:97-103.
2. Ginesu, F., P. Pirina, L. A. Sechi, P. Molicotti, L. Santoru, L. Porcu, A. Fois, P. Arghittu, S. Zanetti, and G. Fadda. 1998. Microbiological diagnosis of tuberculosis: a comparison of old and new methods. J. Chemother. 10:295-300.
3. Reference deleted.
4. Ichiyama, S., Y. Iinuma, S. Yamori, Y. Hasegawa, K. Shimokata, and N. Nakashima. 1997. Mycobacterium growth indicator tube testing in conjunction with the AccuProbe or the AMPLICOR-PCR assay for detecting and identifying mycobacteria from sputum samples. J. Clin. Microbiol. 35:2022-2025.
5. Ichiyama, S., Y. Iinuma, Y. Tawada, S. Yamori, Y. Hasegawa, K. Shimokata, and N. Nakashima. 1996. Evaluation of Gen-Probe amplified Mycobacterium tuberculosis direct test and Roche PCR-microwell plate hybridization method (AMPLICOR MYCOBACTERIUM) for direct detection of mycobacteria. J. Clin. Microbiol. 34:130-133.
6. Ichiyama, S., Y. Ito, F. Sugiura, Y. Iinuma, S. Yamori, M. Shimojima, Y. Hasegawa, K. Shimokata, and N. Nakashima. 1997. Diagnostic value of the strand displacement amplification method compared to those of Roche Amplicor PCR and culture for detecting mycobacteria in sputum samples. J. Clin. Microbiol. 35:3082-3085.
7. Iinuma, Y., S. Ichiyama, S. Yamori, J. Oohama, N. Takagi, Y. Hasegawa, K. Shimokata, and N. Nakashima. 1998. Diagnostic value of the Amplicor PCR assay for initial diagnosis and assessment of treatment response for pulmonary tuberculosis. Microbiol. Immunol. 42:281-287.
8. Iinuma, Y., K. Senda, N. Fujihara, T. Saito, S. Takakura, M. Shimojima, T. Kudo, and S. Ichiyama. 2003. Comparison of the BDProbe Tec ET system with the Cobas Amplicor PCR for direct detection of Mycobacterium tuberculosis in respiratory samples. Eur. J. Clin. Microbiol. Infect. Dis. 22:368-371.
9. Ishiguro, T., J. Saitoh, R. Horie, T. Hayashi, T. Ishizuka, S. Tsuchiya, K. Yasukawa, T. Kido, Y. Nakaguchi, M. Nishibuchi, and K. Ueda. 2003. Intercalation activating fluorescence DNA probe and its application to homogeneous quantification of a target sequence by isothermal sequence amplification in a closed vessel. Anal. Biochem. 314:77-86.
10. Ishiguro, T., J. Saitoh, H. Yawata, H. Yamagishi, S. Iwasaki, and Y. Mitoma. 1995. Homogeneous quantitative assay of hepatitis C virus RNA by polymerase chain reaction in the presence of a fluorescent intercalator. Anal. Biochem. 229:207-213.
11. Japan Anti-Tuberculosis Association. 2004. Japan tuberculosis statistics, annual report: tuberculosis notifications in Japan, 2000-2003. http://www .jata.or.jp/eindex.htm. Accessed 9 July 2005.
12. Moore, D. F., J. I. Curry, C. A. Knott, and V. Jonas. 1996. Amplification of rRNA for assessment of treatment response of pulmonary tuberculosis patients during antimicrobial therapy. J. Clin. Microbiol. 34:1745-1749.
13. Nakaguchi, Y., T. Ishizuka, S. Ohnaka, T. Hayashi, K. Yasukawa, T. Ishiguro, and M. Nishibuchi. 2004. Rapid and specific detection of tdh, trh1, and trh2 mRNA of Vibrio parahaemolyticus using transcription-reverse transcription concerted (TRC) reaction with automated system. J. Clin. Microbiol. 42:4284-4292.
14. Piersimoni, C., and C. Scarparo. 2003. Relevance of commercial amplification methods for direct detection of Mycobacterium tuberculosis complex in clinical samples. J. Clin. Microbiol. 41:5355-5365.
15. Piersimoni, C., C. Scarparo, P. Piccoli, A. Rigon, G. Ruggiero, D. Nista, and S. Bornigia. 2002. Performance assessment of two commercial amplification assays for direct detection of Mycobacterium tuberculosis complex from respiratory and extrapulmonary specimens. J. Clin. Microbiol. 40:4138-4142.
16. Portaels, F., E. Serruys, H. De Beenhouwer, J. Degraux, K. De Ridder, K. Fissette, J. Gomez-Marin, H. Goossens, F. Muhlberger, S. R. Pattyn, F. Nturanye, F. Pouthier, and A. Van Deun. 1996. Evaluation of the Gen-Probe amplified Mycobacterium tuberculosis direct test for the routine diagnosis of pulmonary tuberculosis. Acta Clin. Belg. 51:144-149.
17. Reference deleted.
18. Sarmiento, O. L., K. A. Weigle, J. Alexander, D. J. Weber, and W. C. Miller. 2003. Assessment by meta-analysis of PCR for diagnosis of smear-negative pulmonary tuberculosis. J. Clin. Microbiol. 41:3233-3240.
19. Takakura, S., S. Tsuchiya, N. Fujihara, T. Kudo, Y. Iinuma, S. Mitarai, S. Ichiyama, K. Yasukawa, and T. Ishiguro. 2005. Isothermal RNA sequence amplification method for rapid antituberculosis drug susceptibility testing of Mycobacterium tuberculosis. J. Clin. Microbiol. 43:2489-2491.