Ordering genetic algorithm genomes with reconstructability analysis

International Journal of General Systems

Volumn 32, Issue 5, 2003, Pages 491-502

  Shervais, Stephen ^a   Zwick, Martin ^b,c  

^a EASTERN WASHINGTON UNIVERSITY   (United States)

^b PORTLAND STATE UNIVERSITY   (United States)

^c Faculty of the PSU Systems Science PhD Program   (United States)

Author keywords

Crossover; Genetic algorithms; OCCAM; Optimization; Reconstructability analysis; Transposition

Indexed keywords

EPISTATIC GENES; GENETIC ALGORITHM GENOMES;

CHROMOSOMES; GENETIC ALGORITHMS; INFORMATION THEORY;

GENES;

EID: 27744541876     PISSN: 03081079     EISSN: 15635104     Source Type: Journal    
DOI: 10.1080/0308107031000152513     Document Type: Article

References (22)

1. Ashby, W.R. (1964) "Constraint analysis of many-dimensional relations", General Systems Yearbook 9, 99-105.
2. Beasley, D., Bull, D. and Martin, R. (1993) "Reducing epistasis in combinatorial problems by expansive coding", Proceedings of the Fifth International Conference on Genetic Algorithms (Morgan Kaufman Publishers, San Mateo), pp 400-407.
3. Bishop, Y., Feinberg, S. and Holland, P. (1978) Discrete Multivariate Analysis (MIT Press, Cambridge, MA).
4. Digalakis, J. and Margaritis, K. (2000) "An experimental study of benchmarking functions for Genetic Algorithms", Proceedings of the IEEE International Conference On Systems, Man & Cybernetics, Nashville, TN, October 2000, pp 3810-3815.
5. Goldberg, D., Deb, K., Kargupta, H. and Harik, G. (1993) Rapid, Accurate Optimization of Difficult Problems Using Fast Messy Genetic Algorithms, IlliGAL Report No. 93004, (University of Illinois).
6. Hosseini, J.C., Harmon, R.R. and Zwick, M. (1986) "Segment congruence analysis via information theory", Proceedings, International Society for General Systems Research, Philadelphia, PA, May 1986, pp G62-G77.
7. Holland, J. (1975) Adaptation in Natural and Artificial Systems (University of Michigan Press, Ann Arbor, MI).
8. Klir, G. (1985) The Architecture of Systems Problem Solving (Plenum Press, New York, NY).
9. Klir, G. (1986) "Reconstructability analysis: An offspring of Ashby's constraint theory", Systems Research 3(4), 267-271.
10. Knoke, D. and Burke, P.J. (1980) Log-Linear Models. Quantitative Applications in the Social Sciences Monograph #20, (Sage, Beverly Hills, CA).
11. Krippendorff, K. (1986) Information Theory: Structural Models for Qualitative Data Quantitative Applications in the Social Sciences #62 (Sage, Beverly Hills, CA).
12. McClintock, B. (1987) The Discovery and Characterization of Transposable Elements: The Collected Papers of Barbara McClintock (Garland, New York, NY).
13. Mitchell, M. (1996) An Introduction to Genetic Algorithms (MIT Press, Cambridge, MA).
14. Shervais, S. (2000a) "Developing Improved Inventory and Transportation Policies for Distribution Systems Using Genetic Algorithm and Neural Network Methods", Proceedings of the World Conference on the Systems Sciences, Toronto, Canada, pp 200059-1-200059-17.
15. Shervais, S., (2000b) Adaptive Critic Design of Control Policies for A Multi-Echelon Inventory System, Ph.D. Dissertation, Portland State University), Available at: http://www.cbpa.ewu.edu/~sshervais/Personal_Info/Papers/ Dissertation.ps.zip.
16. Simoes, A. and Costa, E. (1999) "Transposition: {A} Biologically Inspired Mechanism to Use with Genetic Algorithms", Proceedings of the Fourth International Conference on Neural Networks and Genetic Algorithms ({ICANNGA} 99), Portoroz, Slovenia (Springer Verlag, Berlin), pp 178-186.
17. Thornton, C. (1997) "The building block fallacy". Complexity International 4. http://www.csu.edu.au/ci/vol04/thornton/building.htm
18. Willett, K. and Zwick, M. (2002) "A Software Architecture for Reconstructability Analysis", Proceedings of 12th International World Organization of Systems and Cybernetics and 4th International Institute for General Systems Studies Workshop, Pittsburgh, March 24-26, http://www.sysc.pdx. edu/download/papers/softarcobstr/act.htm
19. Zwick, M. (2001a) "Wholes and parts in general systems methodology". In: Wagner, G., ed, The Character Concept in Evolutionary Biology (Academic Press, New York), pp 237-256.
20. Zwick, M. (2001b) "Discrete Multivariate Modeling": http://www.sysc.pdx.edu/res_struct.html.
21. Zwick, M. and Shervais, S. (2002) "Reconstructability Analysis Detection of Optimal Gene Order in Genetic Algorithms", Proceedings of 12th International World Organization of Systems and Cybernetics and 4th International Institute for General Systems Studies Workshop, Pittsburgh, March 24-26.
22. Zwick, M. (2002) "An Overview of Reconstructability Analysis", Proceedings of 12th International World Organization of Systems and Cybernetics and 4th International Institute for General Systems Studies Workshop, Pittsburgh, March 24-26, http://www.sysc.pdx.edu/download/papers/ ldlpitfabstract.htm