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Volumn 33, Issue 19, 2005, Pages 6188-6195

8-Methyl-2′-deoxyguanosine incorporation into parallel DNA quadruplex structures

Author keywords

[No Author keywords available]

Indexed keywords

8 METHYL 2' DEOXYGUANOSINE; DEOXYGUANOSINE DERIVATIVE; OLIGODEOXYRIBONUCLEOTIDE; UNCLASSIFIED DRUG; 8-METHYL-2'-DEOXYGUANOSINE; DEOXYGUANOSINE; DNA; DRUG DERIVATIVE; PROTON; QUADRUPLEX DNA;

EID: 27744511560     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gki924     Document Type: Article
Times cited : (60)

References (39)
  • 1
    • 1042268168 scopus 로고    scopus 로고
    • G-quartets 40 years later: From 5′-GMP to molecular biology and supramolecular chemistry
    • Jeffery,T.D. (2004) G-quartets 40 years later: From 5′-GMP to molecular biology and supramolecular chemistry. Angew. Chem. Int. Ed., 43, 668-698.
    • (2004) Angew. Chem. Int. Ed. , vol.43 , pp. 668-698
    • Jeffery, T.D.1
  • 2
    • 0036297293 scopus 로고    scopus 로고
    • Molecular aptamer beacons for real-time protein recognition
    • Li,J.J., Fang,X. and Tan,W. (2002) Molecular aptamer beacons for real-time protein recognition. Biochem. Biophys. Res. Commun., 292, 31-40.
    • (2002) Biochem. Biophys. Res. Commun. , vol.292 , pp. 31-40
    • Li, J.J.1    Fang, X.2    Tan, W.3
  • 3
    • 20144364292 scopus 로고    scopus 로고
    • Prevalence of quadruplexes in the human genome
    • Huppert,J.L. and Balasubramanian,S. (2005) Prevalence of quadruplexes in the human genome. Nucleic Acids Res., 33, 2908-2916.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2908-2916
    • Huppert, J.L.1    Balasubramanian, S.2
  • 4
    • 3242666778 scopus 로고    scopus 로고
    • Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter
    • Phan,A.T., Modi,Y.S. and Patel,D.J. (2004) Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc., 126, 8710-8716.
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 8710-8716
    • Phan, A.T.1    Modi, Y.S.2    Patel, D.J.3
  • 5
    • 0002216849 scopus 로고    scopus 로고
    • Structures of guanine-rich and cytosine-rich quadruplexes formed in vitro by telomeric, centromeric and triplet repeat disease DNA sequences
    • Patel,D.J., Bouaziz,S., Kettani,A. and Wang,Y. (1999) Structures of guanine-rich and cytosine-rich quadruplexes formed in vitro by telomeric, centromeric and triplet repeat disease DNA sequences. Oxford Handbook of Nucleic Acid Structure, 389-453.
    • (1999) Oxford Handbook of Nucleic Acid Structure , pp. 389-453
    • Patel, D.J.1    Bouaziz, S.2    Kettani, A.3    Wang, Y.4
  • 6
    • 18144364332 scopus 로고    scopus 로고
    • Ability of thrombin to act as molecular chaperone, inducing formation of quadruplex structure of thrombin-binding aptamer
    • Baldrich,E. and O'Sullivan,C.K. (2005) Ability of thrombin to act as molecular chaperone, inducing formation of quadruplex structure of thrombin-binding aptamer. Anal. Biochem., 341, 194-197.
    • (2005) Anal. Biochem. , vol.341 , pp. 194-197
    • Baldrich, E.1    O'Sullivan, C.K.2
  • 9
    • 14844353962 scopus 로고    scopus 로고
    • Effect of ions on the polymorphism, effective charge, and stability of human telomeric DNA. Photon correlation spectroscopy and circular dichroism studies
    • Wlodarczyk,A., Grzybowski,P., Patkowski,A. and Dobek,A. (2005) Effect of ions on the polymorphism, effective charge, and stability of human telomeric DNA. Photon correlation spectroscopy and circular dichroism studies. J. Phys. Chem., 109, 3594-3605.
    • (2005) J. Phys. Chem. , vol.109 , pp. 3594-3605
    • Wlodarczyk, A.1    Grzybowski, P.2    Patkowski, A.3    Dobek, A.4
  • 11
    • 0242330787 scopus 로고    scopus 로고
    • 8-Methylguanosine: A powerful Z-DNA stabilizer
    • Xu,Y., Ikeda,R. and Sugiyama,H. (2003) 8-Methylguanosine: A powerful Z-DNA stabilizer. J. Am. Chem. Soc., 125, 13519-13524.
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 13519-13524
    • Xu, Y.1    Ikeda, R.2    Sugiyama, H.3
  • 12
    • 0026951903 scopus 로고
    • Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions
    • Piotto,M., Saudek,V. and Sklenar,V.J. (1992) Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions. J. Biomol. NMR, 2, 661-665.
    • (1992) J. Biomol. NMR , vol.2 , pp. 661-665
    • Piotto, M.1    Saudek, V.2    Sklenar, V.J.3
  • 13
    • 0343359244 scopus 로고
    • Investigation of exchange processes by two-dimensional NMR spectroscopy
    • Jeener,J., Meier,B., Bachmann,H.P. and Ernst,R.R. (1979) Investigation of exchange processes by two-dimensional NMR spectroscopy. J. Chem. Phys., 71, 4546-4553.
    • (1979) J. Chem. Phys. , vol.71 , pp. 4546-4553
    • Jeener, J.1    Meier, B.2    Bachmann, H.P.3    Ernst, R.R.4
  • 14
    • 0344448273 scopus 로고
    • Coherence transfer by isotropic mixing: Application to proton correlation spectroscopy
    • Braunschweiler,L. and Ernst,R.R. (1983) Coherence transfer by isotropic mixing: Application to proton correlation spectroscopy. J. Magn. Reson., 53, 521-528.
    • (1983) J. Magn. Reson. , vol.53 , pp. 521-528
    • Braunschweiler, L.1    Ernst, R.R.2
  • 15
    • 0021114895 scopus 로고
    • Application of phase sensitive two-dimensional correlated spectroscopy (COSY) for measurements of 1H-1H spin-spin coupling constants in proteins
    • Marion,D. and Wuthrich,K. (1983) Application of phase sensitive two-dimensional correlated spectroscopy (COSY) for measurements of 1H-1H spin-spin coupling constants in proteins. Biochem. Biophys. Res. Commun., 113, 967-974.
    • (1983) Biochem. Biophys. Res. Commun. , vol.113 , pp. 967-974
    • Marion, D.1    Wuthrich, K.2
  • 16
    • 0031576336 scopus 로고    scopus 로고
    • Torsion angle dynamics for NMR structure calculation with the new program DYANA
    • Guntert,P., Mumenthaler,C. and Wuthrich,K. (1997) Torsion angle dynamics for NMR structure calculation with the new program DYANA. J. Mol. Biol., 273, 283-298.
    • (1997) J. Mol. Biol. , vol.273 , pp. 283-298
    • Guntert, P.1    Mumenthaler, C.2    Wuthrich, K.3
  • 17
  • 19
    • 0025358327 scopus 로고
    • Effect of distortions in the deoxyribose phosphate backbone conformation of duplex oligodeoxyribonucleotide dodecamers containing GT, GG, GA, AC, and GU base-pair mismatches on 31P NMR spectra
    • Roongta,V.A., Jones,C.R. and Gorenstein,D.G. (1990) Effect of distortions in the deoxyribose phosphate backbone conformation of duplex oligodeoxyribonucleotide dodecamers containing GT, GG, GA, AC, and GU base-pair mismatches on 31P NMR spectra. Biochemistry, 29, 5245-5258.
    • (1990) Biochemistry , vol.29 , pp. 5245-5258
    • Roongta, V.A.1    Jones, C.R.2    Gorenstein, D.G.3
  • 20
    • 0033215357 scopus 로고    scopus 로고
    • NMR studies on truncated sequences of human telomeric DNA: Observation of a novel A-tetrad
    • Patel,P.K., Koti,A.S.R. and Hosur,R.V. (1999) NMR studies on truncated sequences of human telomeric DNA: Observation of a novel A-tetrad. Nucleic Acids Res., 27, 3836-3843.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 3836-3843
    • Patel, P.K.1    Koti, A.S.R.2    Hosur, R.V.3
  • 21
    • 0029845883 scopus 로고    scopus 로고
    • Synthesis, miscoding specificity, and thermodynamic stability of oligodeoxynucleotide containing 8-Methyl-2′-deoxyguanosine
    • Kohda,K., Tsunomoto,H., Minoura,Y., Tanabe,K. and Shibutani,S. (1996) Synthesis, miscoding specificity, and thermodynamic stability of oligodeoxynucleotide containing 8-Methyl-2′-deoxyguanosine. Chem. Res. Toxicol., 9, 1278-1284.
    • (1996) Chem. Res. Toxicol. , vol.9 , pp. 1278-1284
    • Kohda, K.1    Tsunomoto, H.2    Minoura, Y.3    Tanabe, K.4    Shibutani, S.5
  • 22
    • 0027537022 scopus 로고
    • A DNA aptamer which binds to and inhibits thrombin exhibits a new structural motif for DNA
    • Wang,K.Y., McCurdy,S., Shea,R.G., Swaminathan,S. and Bolton,P.H. (1993) A DNA aptamer which binds to and inhibits thrombin exhibits a new structural motif for DNA. Biochemistry, 32, 1899-1904.
    • (1993) Biochemistry , vol.32 , pp. 1899-1904
    • Wang, K.Y.1    McCurdy, S.2    Shea, R.G.3    Swaminathan, S.4    Bolton, P.H.5
  • 24
    • 0034696801 scopus 로고    scopus 로고
    • Cation-dependent conformational switches in d-TGGCGGC containing two triplet repeats of fragile X syndrome: NMR observations
    • Patel,P.K., Bhavesh,N.S. and Hosur,R.V. (2000) Cation-dependent conformational switches in d-TGGCGGC containing two triplet repeats of fragile X syndrome: NMR observations. Biochem. Biophys. Res. Commun., 270, 967-971.
    • (2000) Biochem. Biophys. Res. Commun. , vol.270 , pp. 967-971
    • Patel, P.K.1    Bhavesh, N.S.2    Hosur, R.V.3
  • 25
    • 0033564067 scopus 로고    scopus 로고
    • NMR observation of T-tetrads in a parallel stranded DNA quadruplex formed by Saccharomyces cerevisiae telomere repeats
    • Patel,P.K. and Hosur,R.V. (1999) NMR observation of T-tetrads in a parallel stranded DNA quadruplex formed by Saccharomyces cerevisiae telomere repeats. Nucleic Acids Res., 27, 2457-2464.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 2457-2464
    • Patel, P.K.1    Hosur, R.V.2
  • 26
    • 0027240171 scopus 로고
    • Strand orientation in the DNA quadruplex formed from the Oxytricha telomere repeat oligonucleotide d(G4T4G4) in solution
    • Smith,F.W. and Feigon,J. (1993) Strand orientation in the DNA quadruplex formed from the Oxytricha telomere repeat oligonucleotide d(G4T4G4) in solution. Biochemistry, 32, 8683-8692.
    • (1993) Biochemistry , vol.32 , pp. 8683-8692
    • Smith, F.W.1    Feigon, J.2
  • 27
    • 28544438728 scopus 로고
    • Barriers to rotation of methyl groups in 4-methylacridine and related compounds. Side-on steric bulk of lone-pair electrons
    • Imashiro,F., Takegoshi,K., Hirayama,K., Terao,T. and Saika,A. (1987) Barriers to rotation of methyl groups in 4-methylacridine and related compounds. Side-on steric bulk of lone-pair electrons. J. Org. Chem., 52, 1401-1404.
    • (1987) J. Org. Chem. , vol.52 , pp. 1401-1404
    • Imashiro, F.1    Takegoshi, K.2    Hirayama, K.3    Terao, T.4    Saika, A.5
  • 28
    • 84977307362 scopus 로고
    • A revision of van der Waals atomic radii for molecular crystals: Nitrogen, oxygen, fluorine, sulfur, chlorine, selenium, bromine and iodine bonded to carbon
    • Nyburg,S.C. and Faerman,C.H. (1985) A revision of van der Waals atomic radii for molecular crystals: Nitrogen, oxygen, fluorine, sulfur, chlorine, selenium, bromine and iodine bonded to carbon. Acta Crystallogr. B, B41, 274-279.
    • (1985) Acta Crystallogr. B , vol.B41 , pp. 274-279
    • Nyburg, S.C.1    Faerman, C.H.2
  • 29
    • 0027523698 scopus 로고
    • Thermodynamics of G-tetraplex formation by telomeric DNAs
    • Lu,M., Guo,Q. and Kallenbach,N.R. (1993) Thermodynamics of G-tetraplex formation by telomeric DNAs. Biochemistry, 32, 598-601.
    • (1993) Biochemistry , vol.32 , pp. 598-601
    • Lu, M.1    Guo, Q.2    Kallenbach, N.R.3
  • 30
    • 0027207078 scopus 로고
    • Effect of thymine tract length on the structure and stability of model telomeric sequences
    • Lu,M., Guo,Q. and Kallenbach,N.R. (1993) Effect of thymine tract length on the structure and stability of model telomeric sequences. Biochemistry, 32, 3596-3603.
    • (1993) Biochemistry , vol.32 , pp. 3596-3603
    • Lu, M.1    Guo, Q.2    Kallenbach, N.R.3
  • 31
    • 0034673130 scopus 로고    scopus 로고
    • Effect of loop sequence and size on DNA aptamer stability
    • Smirnov,I. and Shafer,R.H. (2000) Effect of loop sequence and size on DNA aptamer stability. Biochemistry, 39, 1462-1468.
    • (2000) Biochemistry , vol.39 , pp. 1462-1468
    • Smirnov, I.1    Shafer, R.H.2
  • 32
    • 0343831486 scopus 로고    scopus 로고
    • Synthesis and properties of oligonucleotides containing 8-bromo-2′-deoxyguanosine
    • Fàbrega,C., Macìas,M.J. and Eritja,R. (2001) Synthesis and properties of oligonucleotides containing 8-bromo-2′-deoxyguanosine. Nucleosides Nucleotides, Nucleic Acids., 20, 251-260.
    • (2001) Nucleosides Nucleotides, Nucleic Acids , vol.20 , pp. 251-260
    • Fàbrega, C.1    Macìas, M.J.2    Eritja, R.3
  • 33
    • 12844253187 scopus 로고    scopus 로고
    • Effects of 8-methyl-2′-deoxyadenosine incorporation into quadruplex forming oligodeoxyriboncleotides
    • Virgilio,A., Esposito,V., Randazzo,A., Mayol,L. and Galeone,A. (2004) Effects of 8-methyl-2′-deoxyadenosine incorporation into quadruplex forming oligodeoxyriboncleotides. Bioorg. Med. Chem., 13, 1037-1044.
    • (2004) Bioorg. Med. Chem. , vol.13 , pp. 1037-1044
    • Virgilio, A.1    Esposito, V.2    Randazzo, A.3    Mayol, L.4    Galeone, A.5
  • 35
    • 0036299062 scopus 로고    scopus 로고
    • Circular dichroism spectroscopy reveals invariant conformation of guanine runs in DNA
    • Kypr,J. and Vorlíčková,M. (2002) Circular dichroism spectroscopy reveals invariant conformation of guanine runs in DNA. Biopolymers, 67, 275-277.
    • (2002) Biopolymers , vol.67 , pp. 275-277
    • Kypr, J.1    Vorlíčková, M.2
  • 36
    • 84982401389 scopus 로고
    • A new approach to the study of sequence-dependent properties of polynucleotides
    • Gray,D.M. and Tinoco,I.,Jr (1970) A new approach to the study of sequence-dependent properties of polynucleotides. Biopolymers, 9, 223-244.
    • (1970) Biopolymers , vol.9 , pp. 223-244
    • Gray, D.M.1    Tinoco Jr., I.2
  • 39
    • 0344213748 scopus 로고    scopus 로고
    • Chemically modified nucleic acid aptamers for in vitro selections: Evolving evolution
    • Kusser,W. (2000) Chemically modified nucleic acid aptamers for in vitro selections: Evolving evolution. Rev. Mol. Biotechnol., 74, 27-38.
    • (2000) Rev. Mol. Biotechnol. , vol.74 , pp. 27-38
    • Kusser, W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.