Essential mechanisms in the catalysis of peptide bond formation on the ribosome

Journal of Biological Chemistry

Volumn 280, Issue 43, 2005, Pages 36065-36072

  Beringer, Malte ^a   Bruell, Christian ^b   Xiong, Liqun ^c   Pfister, Peter ^b   Bieling, Peter ^a,e   Katunin, Vladimir I ^d   Mankin, Alexander S ^c   Böttger, Erik C ^b   Rodnina, Marina V ^a  

^a UNIVERSITY OF WITTEN HERDECKE   (Germany)

^b UNIVERSITY OF ZURICH   (Switzerland)

^c UNIVERSITY OF ILLINOIS AT CHICAGO   (United States)

^d PETERSBURG NUCLEAR PHYSICS INSTITUTE   (Russian Federation)

^e EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; CATALYSIS; CHEMICAL BONDS; ENZYME KINETICS; ESCHERICHIA COLI; PH EFFECTS;

BOND FORMATION; GRAM-POSITIVE BACTERIA; PEPTIDE; PUROMYCIN;

PROTEINS;

23 S RRNA; AMINOACYL TRANSFER RNA; PEPTIDE; PEPTIDYLTRANSFERASE; PUROMYCIN; TRANSFER RNA; UNCLASSIFIED DRUG;

ARTICLE; CATALYSIS; CELL FUNCTION; CHEMICAL BOND; CHEMICAL MODIFICATION; ENTROPY; ENZYME SUBSTRATE; ESCHERICHIA COLI; GRAM POSITIVE BACTERIUM; MYCOBACTERIUM SMEGMATIS; NONHUMAN; PH; PRIORITY JOURNAL; RIBOSOME;

ALLELES; BINDING SITES; CATALYSIS; CONSERVED SEQUENCE; ENTROPY; ESCHERICHIA COLI; HYDROGEN-ION CONCENTRATION; KINETICS; MUTAGENESIS; MUTATION; MYCOBACTERIUM SMEGMATIS; PEPTIDES; PLASMIDS; POINT MUTATION; PROTEIN CONFORMATION; PUROMYCIN; RIBOSOMES; RNA; RNA, RIBOSOMAL, 23S; RNA, TRANSFER; SUBSTRATE SPECIFICITY; THERMODYNAMICS; TIME FACTORS;

ESCHERICHIA COLI; MYCOBACTERIUM SMEGMATIS; POSIBACTERIA;

EID: 27744500865     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M507961200     Document Type: Article

References (41)

1. Ban, N., Nissen, P., Hansen, J., Moore, P. B., and Steitz, T. A. (2000) Science 289, 905-920
2. Nissen, P., Hansen, J., Ban, N., Moore, P. B., and Steitz, T. A. (2000) Science 289, 920-930
3. Wolfenden, R. (1963) Biochemistry 338, 1090-1092
4. Barta, A., and Halama, I. (1996) in Ribosomal RNA and Group I Introns (Green, R., and Schroeder, R., eds) pp. 35-54, R. G. Landes Company, Austin, TX
5. Krayevsky, A. A., and Kukhanova, M. K. (1979) Prog. Nucleic Acids Res. Mol. Biol. 23, 1-51
6. Lieberman, K. R., and Dahlberg, A. E. (1995) Prog. Nucleic Acids Res. Mol. Biol. 50, 1-23
7. Maden, B. E., and Monro, R. E. (1968) Eur. J. Biochem. 6, 309-316
8. Moore, P. B., and Steitz, T. A. (2003) Annu. Rev. Biochem. 72, 813-850
9. Nierhaus, K. H., Schulze, H., and Cooperman, B. S. (1980) Biochem. Int. 1, 185-192
10. Katunin, V. I., Muth, G. W., Strobel, S. A., Wintermeyer, W., and Rodnina, M. V. (2002) Mol. Cell 10, 339-346
11. Hansen, J. L., Schmeing, T. M., Moore, P. B., and Steitz, T. A. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 11670-11675
12. Erlacher, M. D., Lang, K., Shankaran, N., Wotzel, B., Huttenhofer, A., Micura, R., Mankin, A. S., and Polacek, N. (2005) Nucleic Acids Res. 33, 1618-1627
13. Parnell, K. M., Seila, A. C., and Strobel, S. A. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 11658-11663
14. Thompson, J., Kim, D. F., O'Connor, M., Lieberman, K. R., Bayfield, M. A., Gregory, S. T., Green, R., Noller, H. F., and Dahlberg, A. E. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 9002-9007
15. Muth, G. W., Ortoleva-Donnelly, L., and Strobel, S. A. (2000) Science 289, 947-950
16. Polacek, N., Gaynor, M., Yassin, A., and Mankin, A. S. (2001) Nature 411, 498-501
17. Sievers, A., Beringer, M., Rodnina, M. V., and Wolfenden, R. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 7897-7901
18. Youngman, E. M., Brunelle, J. L., Kochaniak, A. B., and Green, R. (2004) Cell 117, 589-599
19. Beringer, M., Adio, S., Wintermeyer, W., and Rodnina, M. V. (2003) RNA (N.Y.) 9, 919-922
20. Bevilacqua, P. C., Brown, T. S., Nakano, S., and Yajima, R. (2004) Biopolymers 73, 90-109
21. Weinger, J. S., Parnell, K. M., Dorner, S., Green, R., and Strobel, S. A. (2004) Nat. Struct. Mol. Biol. 11, 1101-1106
22. Pfister, P., Hobbie, S., Brull, C., Corti, N., Vasella, A., Westhof, E., and Bottger, E. C. (2005) J. Mol. Biol. 346, 467-475
23. Pfister, P., Hobbie, S., Vicens, Q., Bottger, E. C., and Westhof, E. (2003) Chembiochem. 4, 1078-1088
24. Sander, P., Belova, L., Kidan, Y. G., Pfister, P., Mankin, A. S., and Bottger, E. C. (2002) Mol. Microbiol. 46, 1295-1304
25. Sander, P., Prammananan, T., and Bottger, E. C. (1996) Mol. Microbiol. 22, 841-848
26. Prammananan, T., Sander, P., Springer, B., and Bottger, E. C. (1999) Antimicrob. Agents Chemother. 43, 447-453
27. Rodnina, M. V., and Wintermeyer, W. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 1945-1949
28. Rodnina, M. V., Savelsbergh, A., Matassova, N. B., Katunin, V. I., Semenkov, Y. P., and Wintermeyer, W. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 9586-9590
29. Merryman, C., and Noller, H. F. (1998) in RNA:Protein Interactions, A Practical Approach (Smith, C. W. J., ed) pp. 237-253, Oxford University Press, Oxford
30. Bayfield, M. A., Dahlberg, A. E., Schulmeister, U., Dorner, S., and Barta, A. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 10096-10101
31. Hesslein, A. E., Katunin, V. I., Beringer, M., Kosek, A. B., Rodnina, M. V., and Strobel, S. A. (2004) Nucleic Acids Res. 32, 3760-3770
32. Gutell, R. R., Weiser, B., Woese, C. R., and Noller, H. F. (1985) Prog. Nucleic Acids Res. Mol. Biol. 32, 155-216
33. Noller, H. F., and Woese, C. R. (1981) Science 212, 403-411
34. Harms, J., Schluenzen, F., Zarivach, R., Bashan, A., Gat, S., Agmon, I., Bartels, H., Franceschi, F., and Yonath, A. (2001) Cell 107, 679-688
35. Bashan, A., Agmon, I., Zarivach, R., Schluenzen, F., Harms, J., Berisio, R., Bartels, H., Franceschi, F., Auerbach, T., Hansen, H. A., Kossoy, E., Kessler, M., and Yonath, A. (2003) Mol. Cell 11, 91-102
36. Pape, T., Wintermeyer, W., and Rodnina, M. V. (1998) EMBO J. 17, 7490-7497
37. Miskin, R., Zamir, A., and Elson, D. (1968) Biochem. Biophys. Res. Commun. 33, 551-557
38. Muth, G. W., Chen, L., Kosek, A. B., and Strobel, S. A. (2001) RNA (N.Y.) 7, 1403-1415
39. Xiong, L., Polacek, N., Sander, P., Bottger, E. C., and Mankin, A. (2001) RNA (N.Y.) 7, 1365-1369
40. Bayfield, M. A., Thompson, J., and Dahlberg, A. E. (2004) Nucleic Acids Res. 32, 5512-5518
41. Kearsey, S. E., and Craig, I. W. (1981) Nature 290, 607-608