Rationalising germplasm collections: A case study for wheat

Theoretical and Applied Genetics

Volumn 111, Issue 7, 2005, Pages 1322-1329

  Dobrovolskaya, O ^a,b   Saleh, U ^a,c   Malysheva Otto, L ^a   Roder M S ^a   Borner A ^a  

^a LEIBNIZ INSTITUTE OF PLANT GENETICS AND CROP PLANT RESEARCH IPK   (Germany)

^b INSTITUTE OF CYTOLOGY AND GENETICS   (Russian Federation)

^c Regional Agricultural Research Station   (Bangladesh)

Author keywords

Duplicates; Ex situ genebank collections; Microsatellites; Triticum spp.; Wheat

Indexed keywords

BIOMARKERS; CROPS; CULTIVATION; DNA; GENES;

DUPLICATES; EX SITU GENEBANK COLLECTIONS; MICROSATELLITES; TRITICUM SPP.;

GENETIC ENGINEERING;

MICROSATELLITE DNA;

ARTICLE; CLASSIFICATION; CLUSTER ANALYSIS; COMPARATIVE STUDY; GENETIC DATABASE; GENETIC VARIABILITY; GENETICS; SPECIES DIFFERENCE; WHEAT;

CLUSTER ANALYSIS; DATABASES, GENETIC; MICROSATELLITE REPEATS; SPECIES SPECIFICITY; TRITICUM; VARIATION (GENETICS);

CULTIVATION; GENES; GENETIC ENGINEERING; NUCLEIC ACIDS; WHEAT;

TRITICUM; TRITICUM AESTIVUM;

EID: 27744487923     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-005-0061-9     Document Type: Article

References (22)

1. Alamerew S, Chebotar S, Huang XQ, Röder MS, Börner A (2004) Genetic diversity in Ethiopian hexaploid and tetraploid wheat germplasm assessed by microsatellite markers. Gen Res Crop Evol 51:559-567
2. Anonymous (2005) Annual Report 2004, Institut für Pflanzengenetik und Kulturpflanzenforschung, Gatersleben, 192pp
3. Börner A, Chebotar S, Korzun V (2000) Molecular characterization of the genetic integrity of wheat (Triticum aestivum L.) germplasm after long term maintenance. Theor Appl Genet 100:494-497
4. Chebotar S, Röder MS, Korzun V, Saal B, Weber WE, Börner A (2003) Molecular studies on genetic integrity of open pollinating species rye (Secale cereale L.) after long term genebank maintenance. Theor Appl Genet 107:1469-1476
5. Donini P, Stephenson P, Bryan GJ, Koebner RMD (1998) The potential of microsatellites for high throughput genetic diversity assessment in wheat and barley. Gen Res Crop Evol 45:415-421
6. Donini P, Law JR, Koebner RMD, Reeves JC, Cooke RJ (2000) Temporal trends in the diversity of UK wheat. Theor Appl Genet 100:912-917
7. FAO (1998) The state of the world's plant genetic resources for food and agriculture. Food and Agriculture Organization of the United Nations, Rome, 510 pp
8. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
9. Hammer K, Knüpfler H, Filatenko A, Zuev E (1998) Diploid wheats in the Gatersleben genebank. In: Jaradat AA (ed) Triticeae III. Science publishers Inc., NY, pp 37-44
10. Hammer K, Filatenko AA, Korzun V (2000) Microsatellite markers - a new tool for distiguishing diploid wheat. Gen Res Crop Evol 47:497-505
11. Hintum TJL, Knüpfler H (1995) Duplication within and between germplasm collection. I. Identifying duplication on the basis of passport data. Gen Res Crop Evol 42:1127-1133
12. Hintum TJL, Visser DL (1995) Duplication within and between germplasm collection. II. Duplication in four European barley collections. Gen Res Crop Evol 42:135-145
13. Huang XQ, Börner A, Röder MS, Ganal MW (2002) Assessing genetic diversity of wheat (Triticum aestivum L.) germplasm using microsatellite markers. Theor Appl Genet 105:699-707
14. Khlestkina EK, Röder MS, Efremova TT, Börner A, Shumny VK (2004a) The genetic diversity of old and modern Siberian varieties of common spring wheat determined by microsatellite markers. Plant Breed 123:122-127
15. Khlestkina EK, Huang XQ, Quenum FJB, Chebotar S, Röder MS, Börner A (2004b) Genetic diversity in cultivated plants - loss or stability? Theor Appl Genet 108:1466-1472
16. Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163
17. Lund B, Ortiz R, Skovgaard IM, Waugh R, Andersen SB (2003) Analysis of potential duplicates in barley gene bank collections using re-sampling of microsatellite data. Theor Appl Genet 106:1129-1138
18. Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70:3321-3323
19. Plaschke J, Ganal MW, Röder MS (1995) Detection of genetic diversity in closely related bread wheat using microsatellite markers. Theor Appl Genet 91:1001-1007
20. Röder MS, Korzun V, Wendehake K, Plaschke J, Tixier M-H, Leroy P, Ganal MW (1998) A microsatellite map of wheat. Genetics 149:2007-2023
21. Ruiz M, Aguiriano E (2004) Analysis of duplication in the Spanish durum wheat collection maintained in the CRF-INIA on the basis of agro-morphological traits and gliadin proteins. Gen Res Crop Evol 51:231-235
22. Sahu RK (1989) Screening for duplicates in the germplasm collection. Int Rice Res Newsl 14:4