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Volumn 345, Issue 1, 2005, Pages 81-89

Sequence confirmation of synthetic phosphorothioate oligodeoxynucleotides using Sanger sequencing reactions in combination with mass spectrometry

Author keywords

Antisense; MALDI TOF MS; Phosphorothioate oligodeoxynucleotide; Sanger sequencing reaction; Sequence analysis

Indexed keywords

MASS SPECTROMETRY; QUALITY CONTROL;

EID: 27644552203     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2005.06.045     Document Type: Article
Times cited : (3)

References (26)
  • 1
    • 0031426571 scopus 로고    scopus 로고
    • Antisense technology and prospects for therapy of viral infections and cancer
    • R.W. Wagner, W.M. Flanagan, Antisense technology and prospects for therapy of viral infections and cancer, Mol. Med. Today 3 (1997) 31-38.
    • (1997) Mol. Med. Today , vol.3 , pp. 31-38
    • Wagner, R.W.1    Flanagan, W.M.2
  • 2
    • 0027376439 scopus 로고
    • Antisense oligonucleotides as therapeutic agents: Is the bullet really magical?
    • C.A. Stein, Y.C. Cheng, Antisense oligonucleotides as therapeutic agents: is the bullet really magical? Science 261 (1993) 1004-1012.
    • (1993) Science , vol.261 , pp. 1004-1012
    • Stein, C.A.1    Cheng, Y.C.2
  • 3
    • 0037733977 scopus 로고    scopus 로고
    • Antisense technologies: Improvement through novel chemical modifications, Eur
    • J. Kurreck, Antisense technologies: improvement through novel chemical modifications, Eur. J. Biochem. 270 (2003) 1628-1644.
    • (2003) J. Biochem. , vol.270 , pp. 1628-1644
    • Kurreck, J.1
  • 4
    • 11944267365 scopus 로고
    • Antisense oligonucleotides: A new therapeutic principle
    • E. Uhlmann, A. Peyman, Antisense oligonucleotides: a new therapeutic principle, Chem. Rev. 90 (1990) 543-584.
    • (1990) Chem. Rev. , vol.90 , pp. 543-584
    • Uhlmann, E.1    Peyman, A.2
  • 5
    • 0037046160 scopus 로고    scopus 로고
    • Novel antisense and peptide nucleic acid strategies for controlling gene expression
    • D.A. Brasch, D.R. Corey, Novel antisense and peptide nucleic acid strategies for controlling gene expression, Biochemistry 41 (2002) 4503-4510.
    • (2002) Biochemistry , vol.41 , pp. 4503-4510
    • Brasch, D.A.1    Corey, D.R.2
  • 7
    • 0001181082 scopus 로고    scopus 로고
    • Chemical sequencing of phosphorothioate oligonucleotides using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
    • L.M. Polo, T.D. McCarley, P.A. Limbach, Chemical sequencing of phosphorothioate oligonucleotides using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry, Anal. Chem. 69 (1997) 1107-1112.
    • (1997) Anal. Chem. , vol.69 , pp. 1107-1112
    • Polo, L.M.1    McCarley, T.D.2    Limbach, P.A.3
  • 9
    • 0027240210 scopus 로고
    • Matrix-assisted laser desorption ionization time-of-flight mass spectrometry: A powerful tool for the mass and sequence analysis of natural and modified oligonucleotides
    • U. Pieles, W. Zurcher, M. Schar, H.E. Moser, Matrix-assisted laser desorption ionization time-of-flight mass spectrometry: a powerful tool for the mass and sequence analysis of natural and modified oligonucleotides, Nucleic Acids Res. 21 (1993) 3191-3196.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 3191-3196
    • Pieles, U.1    Zurcher, W.2    Schar, M.3    Moser, H.E.4
  • 10
    • 0027551428 scopus 로고
    • Matrix-assisted laser desorption ionization time-of-flight mass spectrometry using 3-hydroxypicolinic acid as an ultraviolet-sensitive matrix
    • K.J. Wu, A. Steding, C.H. Becker, Matrix-assisted laser desorption ionization time-of-flight mass spectrometry using 3-hydroxypicolinic acid as an ultraviolet-sensitive matrix, Rapid Commun. Mass Spectrom. 7 (1993) 142-146.
    • (1993) Rapid Commun. Mass Spectrom. , vol.7 , pp. 142-146
    • Wu, K.J.1    Steding, A.2    Becker, C.H.3
  • 11
    • 0030200945 scopus 로고    scopus 로고
    • Interpretation of oligonucleotide mass spectra for determination of sequence using electrospray ionization and tandem mass spectrometry
    • J. Ni, C. Pomerantz, J. Rozenski, Y. Zhang, J.A. McCloskey, Interpretation of oligonucleotide mass spectra for determination of sequence using electrospray ionization and tandem mass spectrometry, Anal. Chem. 68 (1996) 1989-1999.
    • (1996) Anal. Chem. , vol.68 , pp. 1989-1999
    • Ni, J.1    Pomerantz, C.2    Rozenski, J.3    Zhang, Y.4    McCloskey, J.A.5
  • 12
    • 5344225425 scopus 로고    scopus 로고
    • Sequencing of modified oligonucleotides using in-source fragmentation and delayed pulsed ion extraction matrix-assisted laser desorption ionization time-of-flight mass spectrometry
    • B.H. Wang, C.E. Hopkins, A.B. Belenky, A.S. Cohen, Sequencing of modified oligonucleotides using in-source fragmentation and delayed pulsed ion extraction matrix-assisted laser desorption ionization time-of-flight mass spectrometry, Intl. J. Mass Spectrom. Ion Process 169/170 (1997) 331-350.
    • (1997) Intl. J. Mass Spectrom. Ion Process , vol.169-170 , pp. 331-350
    • Wang, B.H.1    Hopkins, C.E.2    Belenky, A.B.3    Cohen, A.S.4
  • 13
    • 0029025875 scopus 로고
    • Mass and sequence verification of modified oligonucleotides using electrospray tandem mass spectrometry
    • J.P. Barry, P. Vouros, A. Vanschepdael, S.J. Law, Mass and sequence verification of modified oligonucleotides using electrospray tandem mass spectrometry, J. Mass Spectrom. 30 (1995) 993-1006.
    • (1995) J. Mass Spectrom. , vol.30 , pp. 993-1006
    • Barry, J.P.1    Vouros, P.2    Vanschepdael, A.3    Law, S.J.4
  • 14
    • 0041346380 scopus 로고    scopus 로고
    • Sequence confirmation of modified oligonucleotides using IRMPD in the external ion reservoir of an electrospray ionization Fourier transform ion cyclotron mass spectrometer
    • K.A. Sannes-Lowery, S.A. Hofstadler, Sequence confirmation of modified oligonucleotides using IRMPD in the external ion reservoir of an electrospray ionization Fourier transform ion cyclotron mass spectrometer, J. Am. Soc. Mass Spectrom. 14 (2003) 825-833.
    • (2003) J. Am. Soc. Mass Spectrom. , vol.14 , pp. 825-833
    • Sannes-Lowery, K.A.1    Hofstadler, S.A.2
  • 16
    • 0033990403 scopus 로고
    • Progress in antisense technology: The end of the beginning
    • S.T. Crooke, Progress in antisense technology: the end of the beginning, Methods Enzymol. 313 (1992) 3-45.
    • (1992) Methods Enzymol. , vol.313 , pp. 3-45
    • Crooke, S.T.1
  • 18
    • 1642332243 scopus 로고    scopus 로고
    • Single base extension (SBE) with proof-reading polymerases and phosphorothioate primers: Improved fidelity in single-substrate assays
    • D.G. Daniel, C.K. Garry, Single base extension (SBE) with proof-reading polymerases and phosphorothioate primers: Improved fidelity in single-substrate assays, Nucleic Acids Res. 31 (2003) e7.
    • (2003) Nucleic Acids Res. , vol.31
    • Daniel, D.G.1    Garry, C.K.2
  • 19
    • 0036314239 scopus 로고    scopus 로고
    • Effect of antisense oligonucleotides targeting telomerase catalytic subunit on tumour cell proliferation in vivo
    • S.Q. Wang, L. Lin, Z.B. Chen, R.X. Lin, S.H. Chen, W. Guan, X.H. Wang, Effect of antisense oligonucleotides targeting telomerase catalytic subunit on tumour cell proliferation in vivo, Chin. Sci. Bull. 47 (2002) 993-997.
    • (2002) Chin. Sci. Bull. , vol.47 , pp. 993-997
    • Wang, S.Q.1    Lin, L.2    Chen, Z.B.3    Lin, R.X.4    Chen, S.H.5    Guan, W.6    Wang, X.H.7
  • 20
    • 0027323648 scopus 로고
    • Method for sequencing synthetic oligodeoxynucleotide phosphorothioates
    • J. Tang, A.M. Roskey, S. Agrawal, Method for sequencing synthetic oligodeoxynucleotide phosphorothioates, Anal. Biochem. 212 (1993) 134-137.
    • (1993) Anal. Biochem. , vol.212 , pp. 134-137
    • Tang, J.1    Roskey, A.M.2    Agrawal, S.3
  • 21
    • 0023734473 scopus 로고
    • Novel non-templated nucleotide addition reactions catalyzed by procaryotic and eucaryotic DNA polymerase
    • J.M. Clark, Novel non-templated nucleotide addition reactions catalyzed by procaryotic and eucaryotic DNA polymerase, Nucleic Acids Res. 16 (1988) 9677-9686.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 9677-9686
    • Clark, J.M.1
  • 22
    • 0031451357 scopus 로고    scopus 로고
    • Selectivity of anion exchange chromatography and capillary gel electrophoresis for the analysis of phosphorothioate oligonucleotides
    • G.S. Srivatsa, P. Klopchin, M. Batt, M. Feldman, R.H. Carlson, D.L. Cole, Selectivity of anion exchange chromatography and capillary gel electrophoresis for the analysis of phosphorothioate oligonucleotides, J. Pharm. Biomed. Anal. 16 (1997) 619-630.
    • (1997) J. Pharm. Biomed. Anal. , vol.16 , pp. 619-630
    • Srivatsa, G.S.1    Klopchin, P.2    Batt, M.3    Feldman, M.4    Carlson, R.H.5    Cole, D.L.6
  • 23
    • 0029043213 scopus 로고
    • Gram-scale purification of phosphorothioate oligonucleotides using ion-exchange displacement chromatography
    • J.A. Gerstner, P. Pedroso, J. Morris, B.J. Bergot, Gram-scale purification of phosphorothioate oligonucleotides using ion-exchange displacement chromatography, Nucleic Acids Res. 23 (1995) 2292-2299.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 2292-2299
    • Gerstner, J.A.1    Pedroso, P.2    Morris, J.3    Bergot, B.J.4
  • 24
    • 0025279948 scopus 로고
    • Analytical study of phosphorothioate analogues of oligodeoxynucleotides using high-performance liquid chromatography
    • S. Agrawal, J.Y. Tang, D.M. Brown, Analytical study of phosphorothioate analogues of oligodeoxynucleotides using high-performance liquid chromatography, J. Chromatogr. 509 (1990) 396-399.
    • (1990) J. Chromatogr. , vol.509 , pp. 396-399
    • Agrawal, S.1    Tang, J.Y.2    Brown, D.M.3
  • 25
    • 0026506242 scopus 로고
    • Separation of synthetic phosphorothioate oligonucleotides from their oxygenated (phosphodiester) defect species by strong anion-exchange high-performance liquid chromatography
    • B.J. Bergot, W. Egan, Separation of synthetic phosphorothioate oligonucleotides from their oxygenated (phosphodiester) defect species by strong anion-exchange high-performance liquid chromatography, J. Chromatogr. 599 (1992) 35-42.
    • (1992) J. Chromatogr. , vol.599 , pp. 35-42
    • Bergot, B.J.1    Egan, W.2
  • 26
    • 0026505337 scopus 로고
    • Ion-exchange high-performance liquid chromatography analysis of oligodeoxyribonucleotide phosphorothioates
    • V. Metelev, S. Agrawal, Ion-exchange high-performance liquid chromatography analysis of oligodeoxyribonucleotide phosphorothioates, Anal. Biochem. 200 (1992) 342-346.
    • (1992) Anal. Biochem. , vol.200 , pp. 342-346
    • Metelev, V.1    Agrawal, S.2


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