메뉴 건너뛰기




Volumn 4, Issue 1, 2005, Pages

Weighted analysis of paired microarray experiments

Author keywords

DNA Microarray; Empirical Bayes; QA; QC; Quality Assessment; Quality Assurance; Quality control

Indexed keywords

COMPLEMENTARY DNA;

EID: 27644545360     PISSN: 15446115     EISSN: 15446115     Source Type: Journal    
DOI: 10.2202/1544-6115.1160     Document Type: Article
Times cited : (8)

References (31)
  • 1
    • 15944414553 scopus 로고    scopus 로고
    • Weighted analysis of microarray gene expression using maximum-likelihood
    • D.J. Bakewell and E. Wit. Weighted analysis of microarray gene expression using maximum-likelihood. Bioinformatics, 21(6):723-729, 2005.
    • (2005) Bioinformatics , vol.21 , Issue.6 , pp. 723-729
    • Bakewell, D.J.1    Wit, E.2
  • 2
    • 0034948896 scopus 로고    scopus 로고
    • A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes
    • P. Baldi and A.D. Long. A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes. Bioinformatics, 17(6):509-519, 2001.
    • (2001) Bioinformatics , vol.17 , Issue.6 , pp. 509-519
    • Baldi, P.1    Long, A.D.2
  • 5
    • 4644281352 scopus 로고    scopus 로고
    • A graphical approach for quality control of oligonucleotide array data
    • D.-T. Chen. A graphical approach for quality control of oligonucleotide array data. Journal of Biopharmaceutical Statistics, 14(3):591-606, 2004.
    • (2004) Journal of Biopharmaceutical Statistics , vol.14 , Issue.3 , pp. 591-606
    • Chen, D.-T.1
  • 6
    • 0242281980 scopus 로고    scopus 로고
    • Bioconductor R packages for exploratory data analysis and normalization of cDNA microarray data
    • G. Parmigiani, E.S. Garett, R.A. Irizarry, and S.L. Zeger, editors, Springer
    • S. Dudoit and J.Y.H. Yang. Bioconductor R packages for exploratory data analysis and normalization of cDNA microarray data. In G. Parmigiani, E.S. Garett, R.A. Irizarry, and S.L. Zeger, editors, The Analysis of Gene Expression Data. Springer, 2003.
    • (2003) The Analysis of Gene Expression Data
    • Dudoit, S.1    Yang, J.Y.H.2
  • 8
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • R. Edgar, M. Domrachev, and A.E. Lash. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Research, 30(1):207-210, 2002.
    • (2002) Nucleic Acids Research , vol.30 , Issue.1 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 14
    • 0037336332 scopus 로고    scopus 로고
    • QA/QC as a pressing need for microarray analysis: Meeting report from CAMDA'02
    • K. Johnson and S. Lin. QA/QC as a pressing need for microarray analysis: meeting report from CAMDA'02. BioTechniques, 34(suppl):S62-S63, 3 2003.
    • (2003) BioTechniques , vol.34 , Issue.SUPPL.
    • Johnson, K.1    Lin, S.2
  • 16
    • 0035793042 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
    • C. Li and W. Wong. Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection. Proceedings of the National Academy of Science U S A, 98:31-36, 2001.
    • (2001) Proceedings of the National Academy of Science U S A , vol.98 , pp. 31-36
    • Li, C.1    Wong, W.2
  • 17
    • 0036012343 scopus 로고    scopus 로고
    • Replicated microarray data
    • I. Lönnstedt and T. Speed. Replicated microarray data. Statistica Sinica, 12 (1):31-46, 2002.
    • (2002) Statistica Sinica , vol.12 , Issue.1 , pp. 31-46
    • Lönnstedt, I.1    Speed, T.2
  • 19
    • 15244345205 scopus 로고    scopus 로고
    • Diagnostic plots for detecting outlying slides in a cDNA microarray experiment
    • T. Park, S.-G. Yi, S. Lee, and J.K. Lee. Diagnostic plots for detecting outlying slides in a cDNA microarray experiment. BioTechniques, 38(3): 463-471, 2005.
    • (2005) BioTechniques , vol.38 , Issue.3 , pp. 463-471
    • Park, T.1    Yi, S.-G.2    Lee, S.3    Lee, J.K.4
  • 20
    • 5344244656 scopus 로고    scopus 로고
    • R Foundation for Statistical Computing, Vienna, Austria
    • R Development Core Team. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria, 2004. URL http://www.R-project.org.
    • (2004) R: A Language and Environment for Statistical Computing
  • 23
    • 1042289325 scopus 로고    scopus 로고
    • Application and optimization of microarray technologies for human postmortem brain studies
    • M.M. Ryan, S.J. Huffaker, M.J. Webster, M. Wayland, T. Freeman, and S. Bahn. Application and optimization of microarray technologies for human postmortem brain studies. Biological Psychiatry, 55(4):329-336, 2004.
    • (2004) Biological Psychiatry , vol.55 , Issue.4 , pp. 329-336
    • Ryan, M.M.1    Huffaker, S.J.2    Webster, M.J.3    Wayland, M.4    Freeman, T.5    Bahn, S.6
  • 25
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
    • G.K. Smyth. Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Statistical Applications in Genetics and Molecular Biology, 3(1), 2004.
    • (2004) Statistical Applications in Genetics and Molecular Biology , vol.3 , Issue.1
    • Smyth, G.K.1
  • 29
    • 0035433128 scopus 로고    scopus 로고
    • Quantitative quality control in microarray image processing and data acquisition
    • X. Wang, S. Ghosh, and S.W. Guo. Quantitative quality control in microarray image processing and data acquisition. Nucleic Acids Research, 29(15):e75, 2001.
    • (2001) Nucleic Acids Research , vol.29 , Issue.15
    • Wang, X.1    Ghosh, S.2    Guo, S.W.3
  • 30
    • 0041592552 scopus 로고    scopus 로고
    • Quantitative quality control in microarray experiments and the application in data filtering, normalization and false positive rate prediction
    • X. Wang, M.J. Hessner, Y. Wu, N. Pati, and S. Ghosh. Quantitative quality control in microarray experiments and the application in data filtering, normalization and false positive rate prediction. Bioinformatics, 19(11):1341-1347, 2003.
    • (2003) Bioinformatics , vol.19 , Issue.11 , pp. 1341-1347
    • Wang, X.1    Hessner, M.J.2    Wu, Y.3    Pati, N.4    Ghosh, S.5
  • 31
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
    • Y.H. Yang, S. Dudoit, P. Luu, D. Lin, V. Peng, J. Ngai, and T.P. Speed. Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Research, 30(4):e15, 2002.
    • (2002) Nucleic Acids Research , vol.30 , Issue.4
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3    Lin, D.4    Peng, V.5    Ngai, J.6    Speed, T.P.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.