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Volumn 21, Issue 20, 2005, Pages 3918-3925

Erratum: Oligonucleotide properties determination and primer designing: a critical examination of predictions (Bioinformatics 21:20 (3918–3925) DOI: 10.1093/bioinformatics/bti633);Oligonucleotide properties determination and primer designing: A critical examination of predictions

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; ANTISENSE OLIGONUCLEOTIDE; CYTOSINE; GUANINE; OLIGONUCLEOTIDE; THYMINE;

EID: 27544466228     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti727     Document Type: Erratum
Times cited : (31)

References (32)
  • 1
    • 3042699988 scopus 로고    scopus 로고
    • Bioinformatic tools and guideline for PCR primer design
    • Abd-Elsalam,K.A. (2003) Bioinformatic tools and guideline for PCR primer design. Afr. J. Biotechnol., 2, 91-95.
    • (2003) Afr. J. Biotechnol. , vol.2 , pp. 91-95
    • Abd-Elsalam, K.A.1
  • 2
    • 0030875847 scopus 로고    scopus 로고
    • Thermodynamics and NMR of internal G-T mismatches in DNA
    • Allawi,H.T. and Santa Lucia,J.,Jr (1997) Thermodynamics and NMR of internal G-T mismatches in DNA. Biochemistry, 36, 10581-10594.
    • (1997) Biochemistry , vol.36 , pp. 10581-10594
    • Allawi, H.T.1    Santa Lucia Jr., J.2
  • 3
    • 25744448618 scopus 로고    scopus 로고
    • Regionalized GC-content of template DNA as a predictor of PCR success
    • Benita,Y. et al. (2003) Regionalized GC-content of template DNA as a predictor of PCR success. Nucleic Acids Res., 31, e99.
    • (2003) Nucleic Acids Res. , vol.31
    • Benita, Y.1
  • 4
    • 0034328137 scopus 로고    scopus 로고
    • Designing PCR primers on the web
    • Binas,M. (2000) Designing PCR primers on the web. Biotechniques, 29, 988-990.
    • (2000) Biotechniques , vol.29 , pp. 988-990
    • Binas, M.1
  • 5
    • 0001550068 scopus 로고
    • Predicting DNA duplex stability from the base sequence
    • Breslauer,K.J. et al. (1986) Predicting DNA duplex stability from the base sequence. Proc. Natl Acad. Sci. USA, 83, 3746-3750.
    • (1986) Proc. Natl. Acad. Sci. USA , vol.83 , pp. 3746-3750
    • Breslauer, K.J.1
  • 6
    • 0014725117 scopus 로고
    • Oligonucleotide interactions. III. Circular dichroism studies of the conformation of deoxyoligonucleotides and deoxyoligonucleotide analogs
    • Cantor,R.C. et al. (1970) Oligonucleotide interactions. III. Circular dichroism studies of the conformation of deoxyoligonucleotides and deoxyoligonucleotide analogs. Biopolymers, 9, 1059-1077.
    • (1970) Biopolymers , vol.9 , pp. 1059-1077
    • Cantor, R.C.1
  • 8
    • 0035420206 scopus 로고    scopus 로고
    • Secondary structure prediction and structure-specific sequence analysis of single-stranded DNA
    • Dong,F. et al. (2001) Secondary structure prediction and structure-specific sequence analysis of single-stranded DNA. Nucleic Acids Res., 29, 3248-3257.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 3248-3257
    • Dong, F.1
  • 9
    • 0026590489 scopus 로고
    • The influence of the target structure on the efficiency of alkylation of single-stranded DNA with reactive derivatives of antisense oligonucleotides
    • Fedorova,O.S. et al. (1992) The influence of the target structure on the efficiency of alkylation of single-stranded DNA with reactive derivatives of antisense oligonucleotides. FEBS Lett., 302, 47-50.
    • (1992) FEBS Lett. , vol.302 , pp. 47-50
    • Fedorova, O.S.1
  • 10
    • 0000075467 scopus 로고
    • Improved free-energy parameters for predictions of RNA duplex stability
    • Freier,S.M. et al. (1986) Improved free-energy parameters for predictions of RNA duplex stability. Proc. Natl Acad. Sci. USA, 83, 9373-9377.
    • (1986) Proc. Natl. Acad. Sci. USA , vol.83 , pp. 9373-9377
    • Freier, S.M.1
  • 11
    • 0023660953 scopus 로고
    • Solution hybridization of crosslinkable DNA oligonucleotides to bacteriophage M13 DNA. Effect of secondary structure on hybridization kinetics and equilibria
    • Gamper,H.B. et al. (1987) Solution hybridization of crosslinkable DNA oligonucleotides to bacteriophage M13 DNA. Effect of secondary structure on hybridization kinetics and equilibria. J. Mol. Biol., 197, 349-362.
    • (1987) J. Mol. Biol. , vol.197 , pp. 349-362
    • Gamper, H.B.1
  • 12
    • 0032526879 scopus 로고    scopus 로고
    • Primer design for large scale sequencing
    • Haas,S. et al. (1998) Primer design for large scale sequencing. Nucleic Acids Res., 26, 3006-3012.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 3006-3012
    • Haas, S.1
  • 13
    • 0018416989 scopus 로고
    • A rapid method for detecting and mapping homology between heterologous DNAs. Evaluation of polyomavirus genomes
    • Howley,P.M. et al. (1979) A rapid method for detecting and mapping homology between heterologous DNAs. Evaluation of polyomavirus genomes. J. Biol. Chem., 254, 4876-4883.
    • (1979) J. Biol. Chem. , vol.254 , pp. 4876-4883
    • Howley, P.M.1
  • 14
    • 0036140076 scopus 로고    scopus 로고
    • MELTING, computing the melting temperature of nucleic acid duplex
    • Le Novere,N. (2001) MELTING, computing the melting temperature of nucleic acid duplex. Bioinformatics, 17, 1226-1227.
    • (2001) Bioinformatics , vol.17 , pp. 1226-1227
    • Le Novere, N.1
  • 15
    • 73649209034 scopus 로고
    • Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature
    • Marmur,J. and Dotty,P. (1962) Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J. Mol. Biol., 5, 109-118.
    • (1962) J. Mol. Biol. , vol.5 , pp. 109-118
    • Marmur, J.1    Dotty, P.2
  • 16
    • 0033565267 scopus 로고    scopus 로고
    • Nucleic acid duplex stability: Influence of base composition on cation effects
    • Nakano,S. et al. (1999) Nucleic acid duplex stability: Influence of base composition on cation effects. Nucleic Acids Res., 27, 2957-2965.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 2957-2965
    • Nakano, S.1
  • 17
    • 0029060850 scopus 로고
    • SSCP primer design based on single-strand DNA structure predicted by a DNA folding program
    • Nielsen,D.A. et al. (1995) SSCP primer design based on single-strand DNA structure predicted by a DNA folding program. Nucleic Acids Res., 23, 2287-2291.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 2287-2291
    • Nielsen, D.A.1
  • 18
    • 0031432735 scopus 로고    scopus 로고
    • Predicting sequence-dependent melting stability of short duplex DNA oligomers
    • Owczarzy,R. et al. (1997) Predicting sequence-dependent melting stability of short duplex DNA oligomers. Biopolymers, 44, 217-239.
    • (1997) Biopolymers , vol.44 , pp. 217-239
    • Owczarzy, R.1
  • 19
    • 1642380887 scopus 로고    scopus 로고
    • Effects of sodium ions on DNA duplex oligomers: Improved predictions of melting temperatures
    • Owczarzy,R. et al. (2004) Effects of sodium ions on DNA duplex oligomers: Improved predictions of melting temperatures. Biochemistry, 43, 3537-3554.
    • (2004) Biochemistry , vol.43 , pp. 3537-3554
    • Owczarzy, R.1
  • 20
    • 15944415071 scopus 로고    scopus 로고
    • Comparison of different melting temperature calculation methods for short DNA sequences
    • Panjkovich,A. and Melo,F. (2005) Comparison of different melting temperature calculation methods for short DNA sequences. Bioinformatics, 21, 711-722.
    • (2005) Bioinformatics , vol.21 , pp. 711-722
    • Panjkovich, A.1    Melo, F.2
  • 21
    • 0031608937 scopus 로고    scopus 로고
    • An introduction to PCR primer design and optimization of amplification reactions
    • Robertson,J.M. and Walsh-Weller,J. (1998) An introduction to PCR primer design and optimization of amplification reactions. Methods Mol. Biol., 98, 121-154.
    • (1998) Methods Mol. Biol. , vol.98 , pp. 121-154
    • Robertson, J.M.1    Walsh-Weller, J.2
  • 22
    • 0025037431 scopus 로고
    • Optimization of the annealing temperature for DNA amplification in vitro
    • Rychlik,W. et al. (1990) Optimization of the annealing temperature for DNA amplification in vitro. Nucleic Acids Res., 18, 6409-6412.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 6409-6412
    • Rychlik, W.1
  • 23
    • 0032539693 scopus 로고    scopus 로고
    • A unified view of polymer, dumbbell and oligonucleotide DNA nearest-neighbor thermodynamics
    • SantaLucia,J.,Jr (1998) A unified view of polymer, dumbbell and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl Acad. Sci. USA, 95, 1460-1465.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 1460-1465
    • SantaLucia Jr., J.1
  • 25
    • 0029968822 scopus 로고    scopus 로고
    • Improved nearest-neighbor parameters for predicting DNA duplex stability
    • SantaLucia,J.,Jr et al. (1996) Improved nearest-neighbor parameters for predicting DNA duplex stability. Biochemistry, 35, 3555-3562.
    • (1996) Biochemistry , vol.35 , pp. 3555-3562
    • SantaLucia Jr., J.1
  • 26
    • 0029134549 scopus 로고
    • Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes
    • Sugimoto,N. et al. (1995) Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes. Biochemistry, 34, 11211-11216.
    • (1995) Biochemistry , vol.34 , pp. 11211-11216
    • Sugimoto, N.1
  • 27
    • 0029859713 scopus 로고    scopus 로고
    • Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes
    • Sugimoto,N. et al. (1996) Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes. Nucleic Acids Res., 24, 4501-4505.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 4501-4505
    • Sugimoto, N.1
  • 28
    • 0034771194 scopus 로고    scopus 로고
    • 2+, deoxynucleotide triphosphate and dimethyl sulfoxide concentrations with comparison to alternative empirical formulas
    • 2+, deoxynucleotide triphosphate and dimethyl sulfoxide concentrations with comparison to alternative empirical formulas. Clin. Chem., 47, 1956-1961.
    • (2001) Clin. Chem. , vol.47 , pp. 1956-1961
    • vonAhsen, N.1
  • 29
    • 0018787038 scopus 로고
    • Hybridization of synthetic oligodeoxyribonucleotides to phi chi 174 DNA: The effect of single base pair mismatch
    • Wallace,R.B. et al. (1979) Hybridization of synthetic oligodeoxyribonucleotides to phi chi 174 DNA: The effect of single base pair mismatch. Nucleic Acids Res., 6, 3543-3557.
    • (1979) Nucleic Acids Res. , vol.6 , pp. 3543-3557
    • Wallace, R.B.1
  • 30
    • 0032552882 scopus 로고    scopus 로고
    • Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs
    • Xia,T. et al. (1998) Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry, 37, 14719-14735.
    • (1998) Biochemistry , vol.37 , pp. 14719-14735
    • Xia, T.1
  • 31
    • 0030968294 scopus 로고    scopus 로고
    • GNA trinucleotide loop sequences producing extraordinarily stable DNA minihairpins
    • Yoshizawa,S. et al. (1997) GNA trinucleotide loop sequences producing extraordinarily stable DNA minihairpins. Biochemistry, 36, 4761-4767.
    • (1997) Biochemistry , vol.36 , pp. 4761-4767
    • Yoshizawa, S.1
  • 32
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker,M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res., 31, 3406-3415.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1


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