Single base mismatch detection by microsecond voltage pulses

Biosensors and Bioelectronics

Volumn 21, Issue 6, 2005, Pages 888-893

  Fixe, F ^a,b   Chu, V ^a   Prazeres, D M F ^b   Conde, J P ^a,b  

^a INESC   (Portugal)

^b INSTITUTO SUPERIOR TÉCNICO   (Portugal)

Author keywords

DNA chip; DNA microarrays; Single base mismatch; SNPs; Voltage pulse

Indexed keywords

ARRAYS; ELECTRIC FIELDS; SILICA; THIN FILMS; VOLTAGE MEASUREMENT;

DNA CHIP; DNA MICROARRAYS; SINGLE-BASE MISMATCH; SNPS; VOLTAGE PULSE;

DNA;

ARTICLE; DNA HYBRIDIZATION; DNA MICROARRAY; ELECTRIC FIELD; ELECTRIC POTENTIAL; ELECTRODE; GENETIC POLYMORPHISM; HYBRIDIZATION; MOLECULAR PROBE; SINGLE NUCLEOTIDE POLYMORPHISM;

BASE PAIR MISMATCH; DNA; DNA MUTATIONAL ANALYSIS; ELECTROCHEMISTRY; ELECTROMAGNETIC FIELDS; IN SITU HYBRIDIZATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYMORPHISM, SINGLE NUCLEOTIDE;

EID: 27444445491     PISSN: 09565663     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bios.2005.02.011     Document Type: Article

References (27)

1. R. Benters, C.M. Niemeyer, D. Drutschmann, D. Blohm, and D. Wöhrle DNA microarrays with PAMAM dendritic linker systems Nucleic Acids Res. 30 2002 e10
2. M. Bernat, E. Titos, and J. Clària Rapid identification of single neucleotide polymorphisms by fluorescence-based capillary electrophoresis Genet. Mol. Res. 1 2002 72 78
3. J. Burmeister, V. Bazilyanska, K. Grothe, B. Koehler, I. Dorn, B.D. Warne, and E. Diessel Single nucleotide polymorphism analysis by chip-based hybridization and direct current electrical detection of gold-labeled DNA Anal. Bioanal. Chem. 379 2004 391 398
4. C.F. Edman, D.E. Raymond, D.J. Wu, E. Tu, R.G. Sosnowski, W.F. Butler, M. Nerenberg, and M.J. Heller Electric field directed nucleic acid hybridization on microchips Nucl. Acids Res. 25 24 1997 4907 4914
5. F. Fixe, H. Branz, N. Louro, V. Chu, D.M.F. Prazeres, and J.P. Conde Immobilization and hybridization by single sub-millisecond electric field pulses, for pixel-addressed DNA microarrays Biosens. Bioelectron. 19 2004 1591 1597
6. F. Fixe, H.M. Branz, D.M.F. Prazeres, V. Chu, and J.P. Conde Covalent immobilization of DNA and hybridization on microchips by microsecond electric field pulses Mat. Res. Soc. Symp. Proc. 820 2004 O2.8
7. F. Fixe, R. Cabeça, D.M.F. Prazeres, G.N.M. Ferreira, V. Chu, and J.P. Conde Electric field pulse assisted covalent immobilization of DNA in the nanosecond time scale Appl. Phys. Lett. 83 2003 1465 1467
8. F. Fixe, A. Faber, D. Gonçalves, D.M.F. Prazeres, R. Cabeça, V. Chu, G.N. Ferreira, and J.P. Conde Thin film micro arrays with immobilized DNA for hybridization analysis Mat. Res. Soc. Symp. Proc 723 2002 O2.3.1
9. F. Fixe, D.M.F. Prazeres, V. Chu, and J.P. Conde An on-chip thin film photodetector for the quantification of DNA probes and targets in microarrays Nucleic Acids Res. 32 2004 e70
10. P.N. Gilles, D. Wu, C.B. Foster, P.J. Dillon, and S.J. Chanock Single nucleotide polymorphic discrimination by an electronic dot blot assay on semiconductor microchips Nat. Biotechnol. 17 1999 365 370
11. Z. Guo, R.A. Guilfoyle, A.J. Thiel, R. Wang, and L.M. Smith Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports Nucleic Acids Res. 22 1994 5456 5465
12. J.G. Hacia Resequencing and mutational analysis using oligonucleotide microarrays Nat. Genet. Suppl. 21 1999 42 47
13. M.J. Heller, A.H. Forster, and E. Tu Active microelectronic chip devices which utilize controlled electrophoretic fields for multiplex DNA hybridization and other genomic applications Electrophoresis 21 2000 157 164
14. R.J. Lipshutz, S.P.A. Fodor, T.R. Gingeras, and D.J. Lockhart High density synthetic oligonucleotide arrays Nat. Genet. Suppl. 21 1999 20 24
15. A. Marshall, and J. Hodgson DNA chips: an array of possibilities Nat. Biotechnol. 16 1998 27
16. R. Myers, S. Fischer, L. Lerman, and T. Maniatis Nearly all single base substitutions in DNA fragments joined to a GC-clamp can be detected by denaturing gradient gel electrophoresis Nucl. Acids Res. 13 1985 3131 3145
17. P. Nollau, and C. Wagener Methods for detection of point mutations: performance and quality assessment Clin. Chem. 43 1997 1114 1128
18. T. Okamoto, T. Suzuki, and N. Yamamoto Microarray fabrication with covalent attachment of DNA using bubble jet technology Nat. Biotechnol. 18 2000 438 441
19. M. Orita, H. Iwahana, H. Kanazawa, K. Hayashi, and T. Sekiya Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms PNAS 86 1989 2766 2770
20. A.C. Pease, D. Solas, E. Sullivan, M.T. Cronin, C.P. Homes, and S. Fodor Light-generated oligonucleotide arrays for rapid DNA sequence PNAS 91 1994 5022
21. G. Ramsay DNA chips: state-of-the art Nat. Biotechnol. 16 1998 40
22. D. Schmalzing, A. Belenky, M.A. Novotny, L. Koutny, O. Salas-Solano, S. El-Difrawy, A. Adourian, P. Matsudaira, and D. Ehrlich Microchip electrophoresis: a method for high-speed SNP detection Nucl. Acids Res. 28 2000 e43
23. E. Southern, K. Mir, and M. Shchepinov Molecular Interactions on microarrays Nat. Genet. Suppl. 21 1999 5 9
24. R.L. Stears, T. Martinsk, and M. Schena Trends in microarray analysis Nat. Med. 9 2003 140 145
25. K. Tawa, and W. Knoll Mismatching base-pair dependence of the kinetics of DNA-DNA hybridization studied by surface plasmon fluorescence spectroscopy Nucleic Acids Res. 32 2004 2372 2377
26. E. Tu, A.H. Forster, and M.J. Heller Active microelectronic chip devices which utilize controlled electrophoretic fields for multiplex DNA hybridization and other genomic applications Electrophoresis 21 2000 157 164
27. J. Wang Survey and summary: from DNA biosensors to gene chips Nucl. Acids Res. 28 2000 3011 3016